mRNA_D-mesarthrocarpus_Contig930.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig930.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig930.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig930.2.1 vs. uniprot
Match: A0A6H5JRP3_9PHAE (GT8 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRP3_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 1.760e-43
Identity = 106/246 (43.09%), Postives = 132/246 (53.66%), Query Frame = 1 
Query:   61 GMSCLVRREGYLTVGSEHPSGVCGPEQALRLVSTGAYFEAFRQDKVCLETAAGNILTLSKGRVGRACSPENQFVLQAVATVRMTR--------GRDALSFAPPPDQEPSGEYCVYNPISGFYLSSKARPQAQCGETEHWRLEQAPAVPSQKCAKGGRSSGGXXXXNAHRRASGKXXXXXXXXXXXXTSVAGAAVAALLDPHYASVRSPLVALYGYVAAATALLLARGLLKHMVERATRG--GRGTD 768
            G SCL  + G++  G +  S VCG EQALR V+TGAYFEAFRQDKVCLE A G  LTL +  V +AC PE QFV Q VA  +++         G   L        E S EYC+YNP SGFYLS++ RP+AQCG  EHWR+  AP  P  K   G  +  G     A                        +A +ALL P++ S R+PL+  YGY+ AATALL+AR L   +      G  GRG+ 
Sbjct: 1082 GQSCLESQAGFVEAGGKRLSRVCGAEQALRPVATGAYFEAFRQDKVCLEVAGGGFLTLGRVHVAQACLPEFQFVFQEVAPTKLSSKDKGDGSGGGGRLVVGGGTAAE-SVEYCIYNPASGFYLSAQGRPRAQCGAMEHWRVRAAPLAPGLKGGGGSLAGSGGTSTKAK-----------------------SAFSALLHPNFLS-RAPLLTFYGYLLAATALLVARALFSMLATSPCVGATGRGSS 1302
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig930.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JRP3_9PHAE1.760e-4343.09GT8 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig930contigD-mesarthrocarpus_Contig930:1218..2225 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size773
Hectar predicted targeting categorymitochondrion
Exons2
Cds size771
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791085.1733978-CDS-D-mesarthrocarpus_Contig930:1217..15661680791085.1733978-CDS-D-mesarthrocarpus_Contig930:1217..1566Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig930 1218..1566 +
1680791085.1841507-CDS-D-mesarthrocarpus_Contig930:1801..22231680791085.1841507-CDS-D-mesarthrocarpus_Contig930:1801..2223Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig930 1802..2223 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig930.2.1prot_D-mesarthrocarpus_Contig930.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig930 1218..2223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig930.2.1

>prot_D-mesarthrocarpus_Contig930.2.1 ID=prot_D-mesarthrocarpus_Contig930.2.1|Name=mRNA_D-mesarthrocarpus_Contig930.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=257bp
LTCWWGSSPSGSILRLARLGGMSCLVRREGYLTVGSEHPSGVCGPEQALR
LVSTGAYFEAFRQDKVCLETAAGNILTLSKGRVGRACSPENQFVLQAVAT
VRMTRGRDALSFAPPPDQEPSGEYCVYNPISGFYLSSKARPQAQCGETEH
WRLEQAPAVPSQKCAKGGRSSGGSSSSNAHRRASGKSGAPVSSSRRRHTS
VAGAAVAALLDPHYASVRSPLVALYGYVAAATALLLARGLLKHMVERATR
GGRGTDR
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mRNA from alignment at D-mesarthrocarpus_Contig930:1218..2225+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig930.2.1 ID=mRNA_D-mesarthrocarpus_Contig930.2.1|Name=mRNA_D-mesarthrocarpus_Contig930.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1008bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig930:1218..2225+ (Discosporangium mesarthrocarpum MT17_79)
CTGACCTGTTGGTGGGGCTCCTCCCCCTCGGGGTCCATCCTAAGACTGGC
GCGGCTGGGGGGCATGTCGTGCCTGGTCCGGCGGGAGGGATACCTCACGG
TGGGGAGTGAGCACCCATCAGGGGTGTGCGGGCCTGAGCAGGCACTGCGG
CTCGTCTCCACGGGGGCATACTTCGAGGCCTTCCGGCAGGACAAGGTGTG
CCTAGAGACTGCGGCGGGGAACATCCTGACACTCTCCAAGGGGCGGGTGG
GCCGTGCCTGCTCCCCGGAGAACCAGTTTGTCCTCCAGGCGGTGGCAACA
GTTCGGATGACCAGGGGCCGGGATGCGCTGTCATTCGCTCCTCCACCAGG
TCGGTTGGGTTGGTATCCCCAGGTGTCCTGATCGATGGTGGTCCCAGAAA
AGAGCGCTTTTCTGATGAGCCCTTCTCCTGTTTCCTAATCGCTTTCGGGT
GCATGCCTCATCAGCACAGTCACCCTGTTGTACCAAATCATCACGCCCTC
AACCCCCTTGGGCTACGAACTGTAACCCTGCCATCCTCTTCCCTATACCC
TCCCTCCCTGTCCCCACCCCCACCCCCACCTCAGACCAAGAGCCCTCTGG
AGAGTACTGCGTGTACAACCCCATCTCTGGCTTCTACCTCAGCTCCAAGG
CGCGGCCCCAGGCCCAGTGTGGGGAGACTGAGCACTGGCGCCTTGAGCAG
GCCCCTGCCGTTCCCTCCCAGAAGTGCGCCAAGGGGGGGAGGAGCAGCGG
CGGTAGCAGCAGCAGCAATGCCCACCGGAGGGCCAGCGGGAAGTCTGGTG
CGCCTGTTAGTTCTTCTCGGCGTCGCCACACGAGCGTGGCGGGGGCAGCA
GTCGCGGCCCTCCTGGACCCGCACTATGCCTCTGTTCGCAGCCCCCTCGT
GGCCCTGTACGGCTATGTGGCCGCCGCCACGGCGCTGCTCCTCGCCCGGG
GGCTCCTGAAGCACATGGTGGAGAGGGCCACACGGGGGGGCAGGGGCACA
GACAGGGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig930:1218..2225+

>mRNA_D-mesarthrocarpus_Contig930.2.1 ID=mRNA_D-mesarthrocarpus_Contig930.2.1|Name=mRNA_D-mesarthrocarpus_Contig930.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=771bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig930:1218..2225+ (Discosporangium mesarthrocarpum MT17_79)
CTGACCTGTTGGTGGGGCTCCTCCCCCTCGGGGTCCATCCTAAGACTGGC
GCGGCTGGGGGGCATGTCGTGCCTGGTCCGGCGGGAGGGATACCTCACGG
TGGGGAGTGAGCACCCATCAGGGGTGTGCGGGCCTGAGCAGGCACTGCGG
CTCGTCTCCACGGGGGCATACTTCGAGGCCTTCCGGCAGGACAAGGTGTG
CCTAGAGACTGCGGCGGGGAACATCCTGACACTCTCCAAGGGGCGGGTGG
GCCGTGCCTGCTCCCCGGAGAACCAGTTTGTCCTCCAGGCGGTGGCAACA
GTTCGGATGACCAGGGGCCGGGATGCGCTGTCATTCGCTCCTCCACCAGA
CCAAGAGCCCTCTGGAGAGTACTGCGTGTACAACCCCATCTCTGGCTTCT
ACCTCAGCTCCAAGGCGCGGCCCCAGGCCCAGTGTGGGGAGACTGAGCAC
TGGCGCCTTGAGCAGGCCCCTGCCGTTCCCTCCCAGAAGTGCGCCAAGGG
GGGGAGGAGCAGCGGCGGTAGCAGCAGCAGCAATGCCCACCGGAGGGCCA
GCGGGAAGTCTGGTGCGCCTGTTAGTTCTTCTCGGCGTCGCCACACGAGC
GTGGCGGGGGCAGCAGTCGCGGCCCTCCTGGACCCGCACTATGCCTCTGT
TCGCAGCCCCCTCGTGGCCCTGTACGGCTATGTGGCCGCCGCCACGGCGC
TGCTCCTCGCCCGGGGGCTCCTGAAGCACATGGTGGAGAGGGCCACACGG
GGGGGCAGGGGCACAGACAGG
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