mRNA_D-mesarthrocarpus_Contig10877.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10877.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10877.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10877.1.1 vs. uniprot
Match: A0A6H5K638_9PHAE (Structural maintenance of chromosomes protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K638_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 6.250e-37
Identity = 69/98 (70.41%), Postives = 85/98 (86.73%), Query Frame = 1 
Query:    1 VGFDEELRSAMAYVFGSTIICDSFDAAKQVAFDKGVRARTVTLEGDSFEPQGTLTGGSKSQLGVVLARLGELHTASKELGAREERLAQIMEELRQLSA 294
            VG+DEELR AM+YVFGS+I+CDS   AK+VAFD+GVRA+TVTLEGDSFEPQGTLTGGSKSQLGV+L RL EL +AS+ELG  +ERL  + +++ +LSA
Sbjct:  625 VGYDEELRGAMSYVFGSSIVCDSLQIAKEVAFDRGVRAKTVTLEGDSFEPQGTLTGGSKSQLGVILGRLAELQSASRELGVHQERLRVVSDKIGRLSA 722
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BLAST of mRNA_D-mesarthrocarpus_Contig10877.1.1 vs. uniprot
Match: D7FGT8_ECTSI (SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT8_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 6.290e-37
Identity = 70/102 (68.63%), Postives = 87/102 (85.29%), Query Frame = 1 
Query:    1 VGFDEELRSAMAYVFGSTIICDSFDAAKQVAFDKGVRARTVTLEGDSFEPQGTLTGGSKSQLGVVLARLGELHTASKELGAREERLAQIMEELRQLSADWKK 306
            VG+D+ELR AM+YVFGS+I+CDS   AK+VAFD+GVRA+TVTLEGDSFEPQGTLTGGSKSQLGV+L RL EL +AS+ELG  +ERL  + +++ +LSA  KK
Sbjct:  612 VGYDDELRGAMSYVFGSSIVCDSLQIAKEVAFDRGVRAKTVTLEGDSFEPQGTLTGGSKSQLGVILGRLAELQSASRELGVHQERLRVVSDKIGRLSAASKK 713
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BLAST of mRNA_D-mesarthrocarpus_Contig10877.1.1 vs. uniprot
Match: A0A836CJQ0_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJQ0_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.080e-26
Identity = 52/86 (60.47%), Postives = 70/86 (81.40%), Query Frame = 1 
Query:    1 VGFDEELRSAMAYVFGSTIICDSFDAAKQVAFDKGVRARTVTLEGDSFEPQGTLTGGSKSQLGVVLARLGELHTASKELGAREERL 258
            VG+ +++ +A  Y FG+T++CD+ + A+ VAFD+GVRARTVTLEGD+FEPQGTLTGGSK+QLG VLA+L +L  A+ E G  EER+
Sbjct:  620 VGYADDVAAAAEYAFGTTLVCDALETARAVAFDRGVRARTVTLEGDTFEPQGTLTGGSKAQLGTVLAKLHQLSAANTEAGRLEERV 705
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BLAST of mRNA_D-mesarthrocarpus_Contig10877.1.1 vs. uniprot
Match: A0A2D0QFI2_ICTPU (Structural maintenance of chromosomes protein n=7 Tax=Siluroidei TaxID=1489793 RepID=A0A2D0QFI2_ICTPU)

HSP 1 Score: 108 bits (269), Expect = 3.410e-25
Identity = 54/104 (51.92%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:    1 VGFDEELRSAMAYVFGSTIICDSFDAAKQVAFDKGVRARTVTLEGDSFEPQGTLTGGSKSQLGVVLARLGELHTASKELGAREERLAQIMEELRQLSADWKKVR 312
            VG++ ELR AM YVFG+T++CD+ D AK+VAFDKGV  +TVTL GD F+PQGTLTGG+++Q   VL++L E+     +L A+E  LA + +EL  L    +K R
Sbjct:  610 VGYESELRKAMEYVFGTTLVCDTLDNAKKVAFDKGVSTKTVTLGGDVFDPQGTLTGGARAQTASVLSKLAEVKDVQDKLRAKEAELASVEKELGSLKGTAEKYR 713
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BLAST of mRNA_D-mesarthrocarpus_Contig10877.1.1 vs. uniprot
Match: A0A8C1DYA4_CYPCA (SMC hinge domain-containing protein n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1DYA4_CYPCA)

HSP 1 Score: 106 bits (265), Expect = 1.170e-24
Identity = 54/104 (51.92%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:    1 VGFDEELRSAMAYVFGSTIICDSFDAAKQVAFDKGVRARTVTLEGDSFEPQGTLTGGSKSQLGVVLARLGELHTASKELGAREERLAQIMEELRQLSADWKKVR 312
            VG++ ELR AM YVFG+T++CDS D AK+VAFDKGV  +TVTL GD F+PQGTLTGG+++Q   VL++L E+      L A+E  L  +  EL  L    +K R
Sbjct:  561 VGYESELRKAMEYVFGTTLVCDSLDNAKKVAFDKGVSTKTVTLGGDVFDPQGTLTGGARAQTASVLSKLAEVKDIQDSLRAKEAELTAVESELSSLKGTAEKYR 664
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BLAST of mRNA_D-mesarthrocarpus_Contig10877.1.1 vs. uniprot
Match: A0A672KLH8_SINGR (Structural maintenance of chromosomes protein 2-like n=2 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672KLH8_SINGR)

HSP 1 Score: 106 bits (265), Expect = 1.180e-24
Identity = 54/104 (51.92%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:    1 VGFDEELRSAMAYVFGSTIICDSFDAAKQVAFDKGVRARTVTLEGDSFEPQGTLTGGSKSQLGVVLARLGELHTASKELGAREERLAQIMEELRQLSADWKKVR 312
            VG++ ELR AM YVFG+T++CDS D AK+VAFDKGV  +TVTL GD F+PQGTLTGG+++Q   VL++L E+      L A+E  L  +  EL  L    +K R
Sbjct:  537 VGYESELRKAMEYVFGTTLVCDSLDNAKKVAFDKGVSTKTVTLGGDVFDPQGTLTGGARAQTASVLSKLAEVKDIQDSLRAKEAELTAVESELSSLKGTAEKYR 640
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BLAST of mRNA_D-mesarthrocarpus_Contig10877.1.1 vs. uniprot
Match: A0A6Q2XGE5_ESOLU (Structural maintenance of chromosomes 2 n=1 Tax=Esox lucius TaxID=8010 RepID=A0A6Q2XGE5_ESOLU)

HSP 1 Score: 105 bits (261), Expect = 4.050e-24
Identity = 52/93 (55.91%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:    1 VGFDEELRSAMAYVFGSTIICDSFDAAKQVAFDKGVRARTVTLEGDSFEPQGTLTGGSKSQLGVVLARLGELHTASKELGAREERLAQIMEEL 279
            VG++ +LR AM YVFGST++CD+ D AKQVAFD+ +  +TVTL GD F+PQGTLTGG++SQ   VL+ L EL  A + L ARE  L  + +EL
Sbjct:  603 VGYEADLRKAMEYVFGSTLVCDTLDNAKQVAFDRRIMTKTVTLGGDVFDPQGTLTGGARSQSASVLSSLQELREAQENLSAREAELQAVDKEL 695
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BLAST of mRNA_D-mesarthrocarpus_Contig10877.1.1 vs. uniprot
Match: A0A6Q2ZN69_ESOLU (Structural maintenance of chromosomes protein n=2 Tax=Esox lucius TaxID=8010 RepID=A0A6Q2ZN69_ESOLU)

HSP 1 Score: 105 bits (261), Expect = 4.100e-24
Identity = 52/93 (55.91%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:    1 VGFDEELRSAMAYVFGSTIICDSFDAAKQVAFDKGVRARTVTLEGDSFEPQGTLTGGSKSQLGVVLARLGELHTASKELGAREERLAQIMEEL 279
            VG++ +LR AM YVFGST++CD+ D AKQVAFD+ +  +TVTL GD F+PQGTLTGG++SQ   VL+ L EL  A + L ARE  L  + +EL
Sbjct:  589 VGYEADLRKAMEYVFGSTLVCDTLDNAKQVAFDRRIMTKTVTLGGDVFDPQGTLTGGARSQSASVLSSLQELREAQENLSAREAELQAVDKEL 681
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BLAST of mRNA_D-mesarthrocarpus_Contig10877.1.1 vs. uniprot
Match: A0A6Q2YFL4_ESOLU (Structural maintenance of chromosomes protein n=18 Tax=Protacanthopterygii TaxID=41705 RepID=A0A6Q2YFL4_ESOLU)

HSP 1 Score: 105 bits (261), Expect = 4.100e-24
Identity = 52/93 (55.91%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:    1 VGFDEELRSAMAYVFGSTIICDSFDAAKQVAFDKGVRARTVTLEGDSFEPQGTLTGGSKSQLGVVLARLGELHTASKELGAREERLAQIMEEL 279
            VG++ +LR AM YVFGST++CD+ D AKQVAFD+ +  +TVTL GD F+PQGTLTGG++SQ   VL+ L EL  A + L ARE  L  + +EL
Sbjct:  597 VGYEADLRKAMEYVFGSTLVCDTLDNAKQVAFDRRIMTKTVTLGGDVFDPQGTLTGGARSQSASVLSSLQELREAQENLSAREAELQAVDKEL 689
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BLAST of mRNA_D-mesarthrocarpus_Contig10877.1.1 vs. uniprot
Match: A0A3P8XXT5_ESOLU (Structural maintenance of chromosomes protein n=3 Tax=Esox lucius TaxID=8010 RepID=A0A3P8XXT5_ESOLU)

HSP 1 Score: 105 bits (261), Expect = 4.100e-24
Identity = 52/93 (55.91%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:    1 VGFDEELRSAMAYVFGSTIICDSFDAAKQVAFDKGVRARTVTLEGDSFEPQGTLTGGSKSQLGVVLARLGELHTASKELGAREERLAQIMEEL 279
            VG++ +LR AM YVFGST++CD+ D AKQVAFD+ +  +TVTL GD F+PQGTLTGG++SQ   VL+ L EL  A + L ARE  L  + +EL
Sbjct:  610 VGYEADLRKAMEYVFGSTLVCDTLDNAKQVAFDRRIMTKTVTLGGDVFDPQGTLTGGARSQSASVLSSLQELREAQENLSAREAELQAVDKEL 702
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10877.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K638_9PHAE6.250e-3770.41Structural maintenance of chromosomes protein n=1 ... [more]
D7FGT8_ECTSI6.290e-3768.63SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) n=1... [more]
A0A836CJQ0_9STRA2.080e-2660.47Structural maintenance of chromosomes protein n=1 ... [more]
A0A2D0QFI2_ICTPU3.410e-2551.92Structural maintenance of chromosomes protein n=7 ... [more]
A0A8C1DYA4_CYPCA1.170e-2451.92SMC hinge domain-containing protein n=1 Tax=Cyprin... [more]
A0A672KLH8_SINGR1.180e-2451.92Structural maintenance of chromosomes protein 2-li... [more]
A0A6Q2XGE5_ESOLU4.050e-2455.91Structural maintenance of chromosomes 2 n=1 Tax=Es... [more]
A0A6Q2ZN69_ESOLU4.100e-2455.91Structural maintenance of chromosomes protein n=2 ... [more]
A0A6Q2YFL4_ESOLU4.100e-2455.91Structural maintenance of chromosomes protein n=18... [more]
A0A3P8XXT5_ESOLU4.100e-2455.91Structural maintenance of chromosomes protein n=3 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10877contigD-mesarthrocarpus_Contig10877:527..1710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FGT8
Preferred nameSMC2
PFAMsSMC_N,SMC_hinge
Model size312
Max annot lvl2759|Eukaryota
KEGG koko:K06674
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000012,GO:0000070,GO:0000166,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000796,GO:0000799,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003680,GO:0003682,GO:0003690,GO:0003697,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006323,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007127,GO:0007129,GO:0007130,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009892,GO:0009987,GO:0010032,GO:0010564,GO:0010605,GO:0010948,GO:0015616,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0022607,GO:0030261,GO:0030554,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032392,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034506,GO:0034641,GO:0035327,GO:0035639,GO:0036094,GO:0036292,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0045132,GO:0045143,GO:0045595,GO:0045786,GO:0045934,GO:0046483,GO:0046982,GO:0046983,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051383,GO:0051445,GO:0051447,GO:0051716,GO:0051726,GO:0060255,GO:0061982,GO:0065007,GO:0070013,GO:0070058,GO:0070192,GO:0070193,GO:0070550,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0098687,GO:0098813,GO:0140013,GO:0140014,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1903046,GO:1903047,GO:1903341,GO:1903342,GO:1990837,GO:2000241,GO:2000242,GO:2000736
Exons2
Evalue1.7e-32
EggNOG OGsCOG1196@1|root,KOG0933@2759|Eukaryota
Descriptionchromosome condensation
Cds size282
COG categoryD
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789219.4012349-CDS-D-mesarthrocarpus_Contig10877:526..7511680789219.4012349-CDS-D-mesarthrocarpus_Contig10877:526..751Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10877 527..751 -
1680789219.4133072-CDS-D-mesarthrocarpus_Contig10877:1623..16801680789219.4133072-CDS-D-mesarthrocarpus_Contig10877:1623..1680Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10877 1624..1680 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789219.4248197-UTR-D-mesarthrocarpus_Contig10877:1680..17101680789219.4248197-UTR-D-mesarthrocarpus_Contig10877:1680..1710Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10877 1681..1710 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10877.1.1prot_D-mesarthrocarpus_Contig10877.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10877 527..1680 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10877.1.1

>prot_D-mesarthrocarpus_Contig10877.1.1 ID=prot_D-mesarthrocarpus_Contig10877.1.1|Name=mRNA_D-mesarthrocarpus_Contig10877.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=94bp
MAYVFGSTIICDSFDAAKQVAFDKGVRARTVTLEGDSFEPQGTLTGGSKS
QLGVVLARLGELHTASKELGAREERLAQIMEELRQLSADWKKVR
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mRNA from alignment at D-mesarthrocarpus_Contig10877:527..1710-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10877.1.1 ID=mRNA_D-mesarthrocarpus_Contig10877.1.1|Name=mRNA_D-mesarthrocarpus_Contig10877.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1184bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10877:527..1710- (Discosporangium mesarthrocarpum MT17_79)
GTGGGTTTCGATGAGGAGTTGCGGAGCGCCATGGCCTACGTCTTTGGCAG
CACCATCATCTGTGATTCCTTTGATGCCGCCAAGCAGGTGGGTCAGGCCA
GCAAGCCACTTGTCACTTTTTGTGTGTTTTGTGTTGGGTGGTCGTTCTAC
TTTTTATCCTCTTCCACCTGCACCCCACAACGCCTCCCCTCCCCCAGCAC
CATGCCTTCCTCCCACTGGGACACAGAGGGAATAGACGTAGCCTTTGACG
TCCTTGCAAGAGGTGCTTCATAGCATATCCCTGGTGCTGGGTAAGGAAAA
AGCAAACACCTGGTGCTGAGCAAGGAATAACACACGCCTGGCACCAGGTA
GGAAGAGAAATATACCCTGTGCTAGGCAAGGAATAAAAAATGCCCATTTC
CAGGTGGAGAGCATCTCATGCATTGTGTGGTACCGTGTCTTAGTGTAGTT
TAGCGGGCTCTTCTCCTTTGCCAATACACTTGGGCAAGTGTTTTTTGATG
GGTCCCAGTGAGCCTGCCAGCCGCTTCAGGGAGGAAAAGGTGCAGGACAC
ACCCTCTCTGTGCCCCAGAGGTTTTACAAAGAATACAACCGCCAGGAATA
CTGAGGAAAGGCTGGAGGACAGGACACCCTCTGTGTGCCCCAGAGCCCAC
GGGATAGAGCTCTGCTGTGCAGCAAGTCTCATGACAGGAACAAGAAAGTT
CTAGGAAAAGGCATCATTTGTACTCACATGGGCTAGAGCTCTACAGCGCA
GTGGATCTCATCTGCTTCACAAGAAACTTCCCCTTGAATAGACACCCCTT
GTACTCCAGACTGCATGAGACCAGAGCTCTACCGTGGGTCTCATCACAGC
CGCAAGAGGACTTCCCCATGAGAATATTCTGCTGTGCTTGAAATCATTTG
AAGAGTGCACATCCCACTTGACCCACAAACCGTAACCCTGCCCTGACCCT
AACCCTTAGGTGGCCTTCGACAAGGGGGTCCGGGCGCGCACCGTAACCCT
GGAAGGCGATTCCTTCGAGCCCCAAGGCACCCTCACAGGGGGTTCAAAGT
CACAGCTGGGGGTGGTATTGGCCAGGCTTGGTGAGCTCCATACAGCCTCC
AAGGAACTTGGAGCCAGGGAGGAGAGGCTGGCCCAGATAATGGAGGAGCT
GCGCCAGCTCTCTGCAGACTGGAAGAAGGTACGT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10877:527..1710-

>mRNA_D-mesarthrocarpus_Contig10877.1.1 ID=mRNA_D-mesarthrocarpus_Contig10877.1.1|Name=mRNA_D-mesarthrocarpus_Contig10877.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=282bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10877:527..1710- (Discosporangium mesarthrocarpum MT17_79)
ATGGCCTACGTCTTTGGCAGCACCATCATCTGTGATTCCTTTGATGCCGC
CAAGCAGGTGGCCTTCGACAAGGGGGTCCGGGCGCGCACCGTAACCCTGG
AAGGCGATTCCTTCGAGCCCCAAGGCACCCTCACAGGGGGTTCAAAGTCA
CAGCTGGGGGTGGTATTGGCCAGGCTTGGTGAGCTCCATACAGCCTCCAA
GGAACTTGGAGCCAGGGAGGAGAGGCTGGCCCAGATAATGGAGGAGCTGC
GCCAGCTCTCTGCAGACTGGAAGAAGGTACGT
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