mRNA_D-mesarthrocarpus_Contig1082.6.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
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Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig1082.6.1 vs. uniprot
Match: D7G4M1_ECTSI (Smc-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M1_ECTSI) HSP 1 Score: 147 bits (371), Expect = 5.680e-39 Identity = 73/101 (72.28%), Postives = 82/101 (81.19%), Query Frame = 1
Query: 1 SRGGVKGMRGMVTSEAGIILKIMVENFMCHRKLSLTLCKHVNFIHGRNGSGKSAILAALQICLGARARLTHRATRLEDLIRHGAKGDAKLEVTLLNTEEGF 303
S+ G K R EAG++LK+ V NFMCHRKLS+ LCKHVNFI+GRNGSGKSAILAALQICLGA+A LTHRA ++ D IRHG KGDA LEVTLLNTE GF
Sbjct: 68 SQRGKKRKRKTEQPEAGVVLKVHVSNFMCHRKLSVPLCKHVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMADFIRHGWKGDAVLEVTLLNTEHGF 168
BLAST of mRNA_D-mesarthrocarpus_Contig1082.6.1 vs. uniprot
Match: D7G4M2_ECTSI (Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M2_ECTSI) HSP 1 Score: 143 bits (360), Expect = 1.730e-37 Identity = 69/88 (78.41%), Postives = 77/88 (87.50%), Query Frame = 1
Query: 40 SEAGIILKIMVENFMCHRKLSLTLCKHVNFIHGRNGSGKSAILAALQICLGARARLTHRATRLEDLIRHGAKGDAKLEVTLLNTEEGF 303
SEAG++LKI V NFMCHRKL++ LCK VNFI+GRNGSGKSAILAALQICLGA+A LTHRA ++ D IRHG KGDA LEVTLLNTE GF
Sbjct: 174 SEAGVVLKINVSNFMCHRKLTVPLCKQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMTDFIRHGWKGDAVLEVTLLNTEHGF 261
BLAST of mRNA_D-mesarthrocarpus_Contig1082.6.1 vs. uniprot
Match: A0A836CML4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CML4_9STRA) HSP 1 Score: 133 bits (335), Expect = 4.080e-34 Identity = 63/89 (70.79%), Postives = 79/89 (88.76%), Query Frame = 1
Query: 40 SEAGIILKIMVENFMCHRKLSLTLCKHVNFIHGRNGSGKSAILAALQICLGARARLTHRATRLEDLIRHGAKGDAKLEVTLLNTEEGFK 306
SE+G+IL+I V+NFMCHR L++ LC+++NFI+G NGSGKSAILAALQICLGARAR+THRA +LEDLIRHG GDA++EV +LNT +G K
Sbjct: 72 SESGVILRIDVKNFMCHRHLTVDLCRNINFINGSNGSGKSAILAALQICLGARARVTHRAHKLEDLIRHGWGGDAEVEVKMLNTPDGHK 160
BLAST of mRNA_D-mesarthrocarpus_Contig1082.6.1 vs. uniprot
Match: W7U0X2_9STRA (Structural maintenance of chromosomes 6 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0X2_9STRA) HSP 1 Score: 121 bits (304), Expect = 6.200e-30 Identity = 58/83 (69.88%), Postives = 68/83 (81.93%), Query Frame = 1
Query: 40 SEAGIILKIMVENFMCHRKLSLTLCKHVNFIHGRNGSGKSAILAALQICLGARARLTHRATRLEDLIRHGAKGDAKLEVTLLN 288
+E G+I+KI ENFMCHRKLS+ LC +VNFIHG+NGSGKSAILAALQICLGARA +THR RL D+IR G G A + V+LLN
Sbjct: 145 AETGVIVKIYCENFMCHRKLSINLCPNVNFIHGQNGSGKSAILAALQICLGARANVTHRGARLSDMIRQGHDGHAIVRVSLLN 227
BLAST of mRNA_D-mesarthrocarpus_Contig1082.6.1 vs. uniprot
Match: A0A7S2KU12_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KU12_9STRA) HSP 1 Score: 119 bits (299), Expect = 2.150e-29 Identity = 62/92 (67.39%), Postives = 74/92 (80.43%), Query Frame = 1
Query: 40 SEAGIILKIMVENFMCHRKLSLTLCKHVNFIHGRNGSGKSAILAALQICLGARARLTHRATRLEDLIRHGAKGD---AKLEVTLLNT-EEGF 303
+EAGII ++ VENFMCHRKLS+ LC++VNFIHG+NGSGKSAILAA+Q+CLGA AR THRA L+DL+R A D AKL VTLLN +GF
Sbjct: 111 AEAGIIQEVYVENFMCHRKLSVKLCRNVNFIHGQNGSGKSAILAAIQVCLGAGARRTHRARNLKDLVRKEAGADCSGAKLRVTLLNKGSDGF 202
BLAST of mRNA_D-mesarthrocarpus_Contig1082.6.1 vs. uniprot
Match: B8BRT7_THAPS (Smc-like protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BRT7_THAPS) HSP 1 Score: 118 bits (296), Expect = 7.440e-29 Identity = 60/86 (69.77%), Postives = 71/86 (82.56%), Query Frame = 1
Query: 40 SEAGIILKIMVENFMCHRKLSLTLCKHVNFIHGRNGSGKSAILAALQICLGARARLTHRATRLEDLIRHGAKGD---AKLEVTLLN 288
+EAGII ++ VENFMCHRKLS+ LC++VNFIHG+NGSGKSAILAA+Q+CLGA AR THRA L+DL+R A D AKL VTLLN
Sbjct: 97 AEAGIINEVYVENFMCHRKLSVKLCRNVNFIHGQNGSGKSAILAAIQVCLGAGARRTHRARNLKDLVRKEAGADCTGAKLRVTLLN 182
BLAST of mRNA_D-mesarthrocarpus_Contig1082.6.1 vs. uniprot
Match: A0A7S2UR98_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UR98_9STRA) HSP 1 Score: 116 bits (291), Expect = 3.510e-28 Identity = 58/91 (63.74%), Postives = 75/91 (82.42%), Query Frame = 1
Query: 40 SEAGIILKIMVENFMCHRKLSLTLCKHVNFIHGRNGSGKSAILAALQICLGARARLTHRATRLEDLIR-HGAKGDAKLEVTLLNT-EEGFK 306
+EAGII ++ V++FMCHRKL++ LC++VNFIHG NGSGKSAILAA+QICLGA AR THRA L++L+R G+ AK+ VTLLN E+G+K
Sbjct: 59 AEAGIIKRVYVQDFMCHRKLTVDLCQNVNFIHGANGSGKSAILAAIQICLGAHARRTHRARNLKELVRKEGSNSGAKVRVTLLNGGEDGYK 149
BLAST of mRNA_D-mesarthrocarpus_Contig1082.6.1 vs. uniprot
Match: F0YEV5_AURAN (SMC_N domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEV5_AURAN) HSP 1 Score: 106 bits (264), Expect = 1.210e-27 Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 1
Query: 37 TSEAGIILKIMVENFMCHRKLSLTLCKHVNFIHGRNGSGKSAILAALQICLGARARLTHRATRLEDLIRHGAKGDAKLEVTLLN 288
+S AGII +I E+FMCH+KL++ C+ +NFI+G NGSGKSAILAALQICLGA A+ THR R+ DL+R G +G A + V+L+N
Sbjct: 8 SSSAGIIHEIYCEHFMCHKKLTIKPCRRINFINGANGSGKSAILAALQICLGASAKSTHRGNRMGDLVREGYEGQALVRVSLVN 91
BLAST of mRNA_D-mesarthrocarpus_Contig1082.6.1 vs. uniprot
Match: A0A8J9SZH1_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SZH1_PHATR) HSP 1 Score: 108 bits (269), Expect = 2.200e-27 Identity = 55/84 (65.48%), Postives = 65/84 (77.38%), Query Frame = 1
Query: 43 EAGIILKIMVENFMCHRKLSLTLCKHVNFIHGRNGSGKSAILAALQICLGARARLTHRATRLEDLIRH--GAKGDAKLEVTLLN 288
EAGII ++ VENFMCH KL +TLC++VNFIHG+NGSGKSAILAA+QICLGA A THRA L+ L+R G AK+ VTL N
Sbjct: 62 EAGIIKEVYVENFMCHPKLRVTLCRNVNFIHGQNGSGKSAILAAIQICLGASASRTHRARNLKGLVRKDAGPNATAKVRVTLWN 145
BLAST of mRNA_D-mesarthrocarpus_Contig1082.6.1 vs. uniprot
Match: A0A662YEN6_9STRA (AAA_23 domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YEN6_9STRA) HSP 1 Score: 114 bits (285), Expect = 2.260e-27 Identity = 51/89 (57.30%), Postives = 69/89 (77.53%), Query Frame = 1
Query: 34 VTSEAGIILKIMVENFMCHRKLSLTLCKHVNFIHGRNGSGKSAILAALQICLGARARLTHRATRLEDLIRHGAKGDAKLEVTLLNTEEG 300
+ SE G++ +I ENFMCHRK+ + LC H+NFI G NGSGKSAI+AA+QICLGA AR+THR +++LIRHG +G+A + +TL N +G
Sbjct: 108 IDSEMGVVEEIYCENFMCHRKMRVALCPHINFITGENGSGKSAIIAAIQICLGASARVTHRGKSIKNLIRHGHEGNALVRITLRNDAKG 196 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1082.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig1082.6.1 >prot_D-mesarthrocarpus_Contig1082.6.1 ID=prot_D-mesarthrocarpus_Contig1082.6.1|Name=mRNA_D-mesarthrocarpus_Contig1082.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=96bp MRGMVTSEAGIILKIMVENFMCHRKLSLTLCKHVNFIHGRNGSGKSAILAback to top mRNA from alignment at D-mesarthrocarpus_Contig1082:21685..23744+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig1082.6.1 ID=mRNA_D-mesarthrocarpus_Contig1082.6.1|Name=mRNA_D-mesarthrocarpus_Contig1082.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2060bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1082:21685..23744+ (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1082:21685..23744+ >mRNA_D-mesarthrocarpus_Contig1082.6.1 ID=mRNA_D-mesarthrocarpus_Contig1082.6.1|Name=mRNA_D-mesarthrocarpus_Contig1082.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=288bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1082:21685..23744+ (Discosporangium mesarthrocarpum MT17_79)back to top |