mRNA_D-mesarthrocarpus_Contig10707.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10707.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10707.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10707.1.1 vs. uniprot
Match: A0A7S2UU96_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU96_9STRA)

HSP 1 Score: 118 bits (295), Expect = 8.450e-33
Identity = 54/65 (83.08%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    1 PRGYFTNGHILVDAQKMSKSKGNFLMMGECVKRFGADPTRFALADAGDSLEDANFAVDTANNAIL 195
            PRGY+TNGHILVDA+KMSKSKGNFLM+ ECV+RF AD TRFA ADAGD+LEDANFA+DTANNA+L
Sbjct:   56 PRGYYTNGHILVDAEKMSKSKGNFLMLDECVERFSADATRFACADAGDTLEDANFAIDTANNAVL 120
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BLAST of mRNA_D-mesarthrocarpus_Contig10707.1.1 vs. uniprot
Match: D7FTL8_ECTSI (Leucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL8_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 2.650e-31
Identity = 60/71 (84.51%), Postives = 63/71 (88.73%), Query Frame = 1 
Query:    1 PRGYFTNGHILVDAQKMSKSKGNFLMMGECVKRFGADPTRFALADAGDSLEDANFAVDTANNAILVLHNEE 213
            PRGYFTNGH+ VDA KMSKSKGNFLMM +CVKRFGAD TRFALADAGDSLEDANFAVD+AN AIL L  EE
Sbjct:  748 PRGYFTNGHVQVDAMKMSKSKGNFLMMDDCVKRFGADATRFALADAGDSLEDANFAVDSANKAILALTGEE 818
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BLAST of mRNA_D-mesarthrocarpus_Contig10707.1.1 vs. uniprot
Match: A0A835YRC2_9STRA (Leucine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRC2_9STRA)

HSP 1 Score: 111 bits (278), Expect = 5.560e-27
Identity = 53/71 (74.65%), Postives = 61/71 (85.92%), Query Frame = 1 
Query:    1 PRGYFTNGHILVDAQKMSKSKGNFLMMGECVKRFGADPTRFALADAGDSLEDANFAVDTANNAILVLHNEE 213
            P+GY+TNGHILVDA+KMSKSKGNFLM+ EC++RF AD TRFA A+AGDSL DANF V TANNAI+ L  EE
Sbjct:  705 PKGYWTNGHILVDAEKMSKSKGNFLMLNECIERFSADATRFACANAGDSLLDANFEVATANNAIITLTKEE 775
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BLAST of mRNA_D-mesarthrocarpus_Contig10707.1.1 vs. uniprot
Match: K0SLG0_THAOC (tRNA-synt_1e domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SLG0_THAOC)

HSP 1 Score: 106 bits (265), Expect = 6.110e-27
Identity = 51/72 (70.83%), Postives = 60/72 (83.33%), Query Frame = 1 
Query:    1 PRGYFTNGHILVDAQKMSKSKGNFLMMGECVKRFGADPTRFALADAGDSLEDANFAVDTANNAILVLHNEEA 216
            PRGY+TNGHI+VDA+KMSKSKGNFLMM E + +F AD TRFA ADAGD+L+DANF   TAN+AI+ L NE A
Sbjct:  104 PRGYYTNGHIMVDAEKMSKSKGNFLMMLETINKFSADATRFACADAGDTLDDANFERSTANSAIVSLSNEAA 175
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BLAST of mRNA_D-mesarthrocarpus_Contig10707.1.1 vs. uniprot
Match: A0A7R9W812_9STRA (Leucine--tRNA ligase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W812_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.630e-26
Identity = 52/71 (73.24%), Postives = 62/71 (87.32%), Query Frame = 1 
Query:    1 PRGYFTNGHILVDAQKMSKSKGNFLMMGECVKRFGADPTRFALADAGDSLEDANFAVDTANNAILVLHNEE 213
            PRGY+TNGH+LVDA+KMSKSKGNFLMM E VK++ AD TRFA ADAGDSL+DANF+ +TA+ AI+ L NEE
Sbjct:  519 PRGYYTNGHVLVDAEKMSKSKGNFLMMDETVKKYSADATRFACADAGDSLDDANFSRETADTAIVSLVNEE 589
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BLAST of mRNA_D-mesarthrocarpus_Contig10707.1.1 vs. uniprot
Match: A0A7S2W6P9_9STRA (Leucine--tRNA ligase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W6P9_9STRA)

HSP 1 Score: 108 bits (269), Expect = 8.510e-26
Identity = 51/71 (71.83%), Postives = 63/71 (88.73%), Query Frame = 1 
Query:    1 PRGYFTNGHILVDAQKMSKSKGNFLMMGECVKRFGADPTRFALADAGDSLEDANFAVDTANNAILVLHNEE 213
            PRGY+TNGH+LVDA+KMSKSKGNFLMM + V++F AD TRFA ADAGDSL+DANFA ++A++AI+ L NEE
Sbjct:  264 PRGYYTNGHVLVDAEKMSKSKGNFLMMDQTVEQFSADATRFACADAGDSLDDANFARESADSAIMSLINEE 334
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BLAST of mRNA_D-mesarthrocarpus_Contig10707.1.1 vs. uniprot
Match: B8BYD7_THAPS (Leucine--tRNA ligase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYD7_THAPS)

HSP 1 Score: 107 bits (268), Expect = 1.250e-25
Identity = 51/72 (70.83%), Postives = 61/72 (84.72%), Query Frame = 1 
Query:    1 PRGYFTNGHILVDAQKMSKSKGNFLMMGECVKRFGADPTRFALADAGDSLEDANFAVDTANNAILVLHNEEA 216
            PRGY+TNGHI+VDA+KMSKSKGNFLMM E ++ + AD TRFA ADAGD+L+DANF+ DTAN AI+ L NE A
Sbjct:  744 PRGYYTNGHIMVDAEKMSKSKGNFLMMLETIENYSADATRFACADAGDTLDDANFSRDTANTAIVSLSNEAA 815
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BLAST of mRNA_D-mesarthrocarpus_Contig10707.1.1 vs. uniprot
Match: A0A7S3XPZ3_HETAK (Leucyl-tRNA synthetase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPZ3_HETAK)

HSP 1 Score: 107 bits (266), Expect = 2.290e-25
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = 1 
Query:    1 PRGYFTNGHILVDAQKMSKSKGNFLMMGECVKRFGADPTRFALADAGDSLEDANFAVDTANNAILVLHNEE 213
            P+GY+ NGH+LVDA+KMSKSKGNF+M+ E V+ F AD TRFA ADAGD+LEDANFA DTAN A+L L  EE
Sbjct:  324 PKGYYCNGHVLVDAEKMSKSKGNFIMLNEAVETFSADGTRFACADAGDTLEDANFARDTANAAVLALSTEE 394
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BLAST of mRNA_D-mesarthrocarpus_Contig10707.1.1 vs. uniprot
Match: A0A7S3V7F8_9STRA (Leucine--tRNA ligase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V7F8_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.330e-25
Identity = 49/71 (69.01%), Postives = 63/71 (88.73%), Query Frame = 1 
Query:    1 PRGYFTNGHILVDAQKMSKSKGNFLMMGECVKRFGADPTRFALADAGDSLEDANFAVDTANNAILVLHNEE 213
            P+G++TNGH+LVDA+KMSKSKGNFLMM + +K+F AD TRFA ADAGDS+EDANF+ +TA++AI+ L NEE
Sbjct:  745 PKGFYTNGHVLVDAEKMSKSKGNFLMMKDTIKQFSADATRFACADAGDSIEDANFSRETADSAIMSLVNEE 815
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BLAST of mRNA_D-mesarthrocarpus_Contig10707.1.1 vs. uniprot
Match: A0A7S1D882_CYCTE (Leucine--tRNA ligase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D882_CYCTE)

HSP 1 Score: 106 bits (265), Expect = 3.010e-25
Identity = 50/72 (69.44%), Postives = 63/72 (87.50%), Query Frame = 1 
Query:    1 PRGYFTNGHILVDAQKMSKSKGNFLMMGECVKRFGADPTRFALADAGDSLEDANFAVDTANNAILVLHNEEA 216
            PRGY+TNGH+LVDA+KMSKSKGNFL+M + +++F AD TRFA ADAGDSL+DANF+ +TA+ AI+ L NEEA
Sbjct:  278 PRGYYTNGHVLVDAEKMSKSKGNFLIMDDTIEQFTADATRFACADAGDSLDDANFSRETADMAIVSLSNEEA 349
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10707.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2UU96_9STRA8.450e-3383.08Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
D7FTL8_ECTSI2.650e-3184.51Leucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835YRC2_9STRA5.560e-2774.65Leucine--tRNA ligase n=1 Tax=Tribonema minus TaxID... [more]
K0SLG0_THAOC6.110e-2770.83tRNA-synt_1e domain-containing protein n=1 Tax=Tha... [more]
A0A7R9W812_9STRA2.630e-2673.24Leucine--tRNA ligase n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2W6P9_9STRA8.510e-2671.83Leucine--tRNA ligase n=1 Tax=Eucampia antarctica T... [more]
B8BYD7_THAPS1.250e-2570.83Leucine--tRNA ligase n=1 Tax=Thalassiosira pseudon... [more]
A0A7S3XPZ3_HETAK2.290e-2570.42Leucyl-tRNA synthetase (Fragment) n=1 Tax=Heterosi... [more]
A0A7S3V7F8_9STRA2.330e-2569.01Leucine--tRNA ligase n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1D882_CYCTE3.010e-2569.44Leucine--tRNA ligase n=1 Tax=Cyclophora tenuis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10707contigD-mesarthrocarpus_Contig10707:488..1207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FTL8
Preferred nameLARS
PFAMsAnticodon_1,tRNA-synt_1
Model size216
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01869
KEGG ReactionR03657
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0001101,GO:0003674,GO:0003824,GO:0004812,GO:0004819,GO:0004823,GO:0004832,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005773,GO:0005783,GO:0005829,GO:0005911,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006425,GO:0006429,GO:0006438,GO:0006518,GO:0006520,GO:0006605,GO:0006622,GO:0006623,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0007034,GO:0007041,GO:0007154,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008361,GO:0009058,GO:0009059,GO:0009267,GO:0009506,GO:0009507,GO:0009536,GO:0009605,GO:0009719,GO:0009892,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010467,GO:0010506,GO:0010507,GO:0010646,GO:0010647,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016070,GO:0016604,GO:0016874,GO:0016875,GO:0017101,GO:0019222,GO:0019538,GO:0019752,GO:0023051,GO:0023056,GO:0030054,GO:0030234,GO:0030695,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032006,GO:0032008,GO:0032535,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034198,GO:0034613,GO:0034641,GO:0034645,GO:0034660,GO:0042221,GO:0042594,GO:0042886,GO:0043038,GO:0043039,GO:0043043,GO:0043085,GO:0043087,GO:0043170,GO:0043200,GO:0043201,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043547,GO:0043603,GO:0043604,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051716,GO:0055044,GO:0060589,GO:0061462,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070887,GO:0071229,GO:0071230,GO:0071233,GO:0071310,GO:0071417,GO:0071495,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0090066,GO:0090304,GO:0098772,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902531,GO:1902533,GO:1903432,GO:1904263,GO:1990253,GO:1990928
Exons2
Evalue4.35e-32
EggNOG OGsCOG0495@1|root,KOG0437@2759|Eukaryota
EC6.1.1.4
Descriptionleucyl-tRNA aminoacylation
Cds size216
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789204.895659-CDS-D-mesarthrocarpus_Contig10707:487..6061680789204.895659-CDS-D-mesarthrocarpus_Contig10707:487..606Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10707 488..606 +
1680789204.9121017-CDS-D-mesarthrocarpus_Contig10707:1110..12071680789204.9121017-CDS-D-mesarthrocarpus_Contig10707:1110..1207Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10707 1111..1207 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10707.1.1prot_D-mesarthrocarpus_Contig10707.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10707 488..1207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10707.1.1

>prot_D-mesarthrocarpus_Contig10707.1.1 ID=prot_D-mesarthrocarpus_Contig10707.1.1|Name=mRNA_D-mesarthrocarpus_Contig10707.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=72bp
PRGYFTNGHILVDAQKMSKSKGNFLMMGECVKRFGADPTRFALADAGDSL
EDANFAVDTANNAILVLHNEEA
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mRNA from alignment at D-mesarthrocarpus_Contig10707:488..1207+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10707.1.1 ID=mRNA_D-mesarthrocarpus_Contig10707.1.1|Name=mRNA_D-mesarthrocarpus_Contig10707.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=720bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10707:488..1207+ (Discosporangium mesarthrocarpum MT17_79)
CCTCGGGGTTACTTCACGAACGGACACATCCTGGTGGATGCTCAGAAGAT
GTCCAAGAGCAAGGGCAACTTCCTCATGATGGGGGAGTGTGTGAAGCGCT
TCGGGGCGGATCCCACAAGGTTGGTCAAGGCAAAAGAGGCGGACACGTGC
CCCCCGCTCGCGTGGGGTGAGGGAGGGTTGCGTGGCGCGGGGAGGTTGGT
TCATTCCATTGCCTGAACTATTTTTTTTTTTTAGCTTAGGTAGCCCTGGG
AAAAGGGCAGCCAGCGGCGGCAGTACATCATGAAGTCACGGCGAAAGTCT
TGTTTCCTGATCCTAACCCTGGTATGCTTCGAAGCATGATCTGCTACCAC
TATACCTTGAATCATGTGTTGTAAGTATGGTTCACCGAGTACTCCGAGTG
ATTCTGAGGGCCGCTCTGTGGCCGCAGGGGACGTTTTACTGTCCCCTGAT
CATTGATAGTCTCAAGAGGTCCCAGCCGACCTTATGGGTTGACCCCACCC
AGCGCCGAGCTTCTGCTATTGGTTCTCTCCCAGTACATCCCACGGGCATC
CTGTCTGTGCCTGGATAGTGTGCAGTTAATGTTGACCACAAGTGGGTGTG
GTGGGTGACATGCACAAATTCAGGTTTGCCCTGGCAGACGCGGGGGACTC
CTTGGAGGATGCTAACTTCGCCGTGGACACCGCCAACAATGCCATCCTTG
TCCTTCACAACGAGGAGGCA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10707:488..1207+

>mRNA_D-mesarthrocarpus_Contig10707.1.1 ID=mRNA_D-mesarthrocarpus_Contig10707.1.1|Name=mRNA_D-mesarthrocarpus_Contig10707.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=216bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10707:488..1207+ (Discosporangium mesarthrocarpum MT17_79)
CCTCGGGGTTACTTCACGAACGGACACATCCTGGTGGATGCTCAGAAGAT
GTCCAAGAGCAAGGGCAACTTCCTCATGATGGGGGAGTGTGTGAAGCGCT
TCGGGGCGGATCCCACAAGGTTTGCCCTGGCAGACGCGGGGGACTCCTTG
GAGGATGCTAACTTCGCCGTGGACACCGCCAACAATGCCATCCTTGTCCT
TCACAACGAGGAGGCA
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