mRNA_D-mesarthrocarpus_Contig10659.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
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Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10659.1.1 vs. uniprot
Match: D7FRR9_ECTSI (rRNA biogenesis protein rrp5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR9_ECTSI) HSP 1 Score: 148 bits (374), Expect = 1.050e-38 Identity = 82/156 (52.56%), Postives = 100/156 (64.10%), Query Frame = 1
Query: 4 FVPSSASDVCVGDVLAGCVSRVQGFGVFVRFFGGFSALCPRAFVGSRAVDGPEGVFQEGDSIRCVAQSVDPGTGKVVVTLNHAHVPASPAIFLRSYLSETISNAA--ISGATPSDT---------------EWSHFAIGSTVNGVVVALKDYGVVL 420
FVP +AS+V GD++AG V RV+ FGVFVRF G F+ALCPR+ R V+ P G+F+EGDS RCV Q VD TG+VVVTL+ VP SPA++LRS LSET ++AA + A PS W GST N VVVALK+YGVVL
Sbjct: 885 FVPGAASNVSPGDLIAGYVCRVESFGVFVRFLGRFTALCPRSMAADRMVEDPSGMFEEGDSARCVVQRVDEDTGRVVVTLDRTTVPTSPALYLRSLLSETFASAAGGCAEAAPSGNLTGNEGAEASEEVARPWGRLEFGSTTNAVVVALKEYGVVL 1040
BLAST of mRNA_D-mesarthrocarpus_Contig10659.1.1 vs. uniprot
Match: A0A6H5LPP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPP1_9PHAE) HSP 1 Score: 143 bits (360), Expect = 8.050e-37 Identity = 78/155 (50.32%), Postives = 96/155 (61.94%), Query Frame = 1
Query: 4 FVPSSASDVCVGDVLAGCVSRVQGFGVFVRFFGGFSALCPRAFVGSRAVDGPEGVFQEGDSIRCVAQSVDPGTGKVVVTLNHAHVPASPAIFLRSYLSETISNAAIS----------GATPSDTE------WSHFAIGSTVNGVVVALKDYGVVL 420
F+P + SDV GD++AG V RV+ FGVFVRF G F+ALCPR+ R V P G+F+EGDS RCV Q VD TG++VVTL+ VP SP ++LRS LSET ++AA G +D W GST N VVVALK+YGVVL
Sbjct: 938 FMPGATSDVTPGDLIAGYVIRVESFGVFVRFLGRFTALCPRSMAADRMVQDPRGMFEEGDSARCVVQRVDEDTGRLVVTLDRTTVPTSPGLYLRSLLSETFASAAAGXXXXXXDNPGGGEGADATAEVARPWGRLEFGSTTNAVVVALKEYGVVL 1092
BLAST of mRNA_D-mesarthrocarpus_Contig10659.1.1 vs. uniprot
Match: W7TCI2_9STRA (Rrna biogenesis protein rrp5 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCI2_9STRA) HSP 1 Score: 116 bits (291), Expect = 1.570e-27 Identity = 59/139 (42.45%), Postives = 84/139 (60.43%), Query Frame = 1
Query: 10 PSSASDVCVGDV-LAGCVSRVQGFGVFVRFFGGFSALCPRAFVGSRAVDGPEGVFQEGDSIRCVAQSVDPGTGKVVVTLNHAHVPASPAIFLRSYLSETISNAAISGATPSDTEWSHFAIGSTVNGVVVALKDYGVVLS 423
P D+ +G L G +SRV+ FG+FVRF GG +A+ PRA + R VD G+F+EGDS+RC+ VD +V VT + +P + + FL + L E++S I +W FA+G+TVN V A+KDYG+VLS
Sbjct: 898 PPRLQDLKIGRARLCGYISRVESFGLFVRFVGGQTAMAPRALIADRFVDDASGLFREGDSVRCLLHRVDADKDRVFVTTQRSQLPVTDSFFLETLLLESVSTIGIDTEESEVFDWQRFALGATVNATVTAVKDYGIVLS 1036
BLAST of mRNA_D-mesarthrocarpus_Contig10659.1.1 vs. uniprot
Match: A0A2P2MJT5_RHIMU (rRNA biogenesis protein RRP5 isoform X1 n=2 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2MJT5_RHIMU) HSP 1 Score: 60.5 bits (145), Expect = 6.560e-8 Identity = 45/149 (30.20%), Postives = 74/149 (49.66%), Query Frame = 1
Query: 7 VPSSASDVCVGDVLAGCVSRVQGFGVFVRFFGGFSALCPRAFVGSRAVDGPEG----VFQEGDSIRCVAQSVDPGTGKVVVTLNHAHVPASPAIFLRSYLSETISNAAISGATPSDTE-----WSH-FAIGSTVNGVVVALKDYGVVLS 423
+PS S +C+ ++ G + + G FVRF G + PR S+A+D F G S+ +V+ T K+ ++L + ++ A FL+ Y +S I SDT+ W+ F+IGST+ GVV L ++GV++S
Sbjct: 751 LPSDLSQICLQSLVPGYICNIIETGCFVRFLGHLTGFSPR----SKAMDDQRTRLSEAFYVGQSVCSNILNVNSETSKITLSLKQSCCSSTDACFLQEYF---LSEEKIFKLQHSDTKGMTLKWAEEFSIGSTIEGVVQELNEFGVIVS 892
BLAST of mRNA_D-mesarthrocarpus_Contig10659.1.1 vs. uniprot
Match: A0A2T9YNH3_9FUNG (Uncharacterized protein n=1 Tax=Smittium simulii TaxID=133385 RepID=A0A2T9YNH3_9FUNG) HSP 1 Score: 52.8 bits (125), Expect = 3.250e-5 Identity = 29/77 (37.66%), Postives = 45/77 (58.44%), Query Frame = 1
Query: 16 SASDVC-VGDVLAGCVSRVQGFGVFVRFFGGFSALCPRAFVGSRAVDGPEGVFQEGDSIRCVAQSVDPGTGKVVVTL 243
S+ D C VG++ AG +S++ FGVFV+FFGG+S L + V E FQ+G ++ ++D T KV ++L
Sbjct: 831 SSIDSCKVGNIEAGFISQITKFGVFVKFFGGYSGLASINSISDHYVSSAELEFQDGQTVLAKIVAIDTQTNKVSLSL 907
BLAST of mRNA_D-mesarthrocarpus_Contig10659.1.1 vs. uniprot
Match: A0A7S1UGX6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGX6_9STRA) HSP 1 Score: 49.7 bits (117), Expect = 3.790e-5 Identity = 34/90 (37.78%), Postives = 48/90 (53.33%), Query Frame = 1
Query: 31 CVGDVLAGCVSRVQGFGVFVRFFGGFSALCPRAFVGSRAVDGPEGVFQEGDSIRCVAQSVDPGTGKVVVTLNHAHVPASPAIFLRSYLSE 300
CVG V+ V GVFVRF GG +ALCP++ +DG F GD++RC+ + VD T K +T + + S A +L + L E
Sbjct: 19 CVGSVVG-----VNNAGVFVRFGGGVTALCPKS-----QIDGDRDDFTYGDAVRCLIKHVD--TEKERLTCSLKALGTSDASYLANQLRE 96 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10659.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10659.1.1 >prot_D-mesarthrocarpus_Contig10659.1.1 ID=prot_D-mesarthrocarpus_Contig10659.1.1|Name=mRNA_D-mesarthrocarpus_Contig10659.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=141bp GFVPSSASDVCVGDVLAGCVSRVQGFGVFVRFFGGFSALCPRAFVGSRAVback to top mRNA from alignment at D-mesarthrocarpus_Contig10659:320..802- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig10659.1.1 ID=mRNA_D-mesarthrocarpus_Contig10659.1.1|Name=mRNA_D-mesarthrocarpus_Contig10659.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=483bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10659:320..802- (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10659:320..802- >mRNA_D-mesarthrocarpus_Contig10659.1.1 ID=mRNA_D-mesarthrocarpus_Contig10659.1.1|Name=mRNA_D-mesarthrocarpus_Contig10659.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=423bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10659:320..802- (Discosporangium mesarthrocarpum MT17_79)back to top |