mRNA_D-mesarthrocarpus_Contig1065.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1065.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig1065.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig1065.1.1 vs. uniprot
Match: D7FYC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYC7_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 5.960e-15
Identity = 37/58 (63.79%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:   52 PAGGLPKRLAAVMSYCRVSTRATCEVLVSMGWVVVNGEVMTDPQAKVDITKDRIVCNG 225
            PAGG PKRLA +MS+CRVS +ATCE+LV MG V VNG V  DP  KVD+  D +V NG
Sbjct:  246 PAGGYPKRLAGLMSFCRVSDKATCEILVEMGRVTVNGVVARDPGIKVDLLTDIVVANG 303
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BLAST of mRNA_D-mesarthrocarpus_Contig1065.1.1 vs. uniprot
Match: A0A835YSP6_9STRA (S4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSP6_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.730e-14
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   61 GLPKRLAAVMSYCRVSTRATCEVLVSMGWVVVNGEVMTDPQAKVDITKDRIVCNG 225
            GLPK+L  V+SYCRVSTR TCE+LV++G V VNGEV+T+   KVDI  D I+ NG
Sbjct:  166 GLPKKLGTVLSYCRVSTRETCEMLVAIGRVTVNGEVVTNADKKVDILNDEIIANG 220
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BLAST of mRNA_D-mesarthrocarpus_Contig1065.1.1 vs. uniprot
Match: A0A6H5JE62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE62_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 8.430e-14
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:   55 AGGLPKRLAAVMSYCRVSTRATCEVLVSMGWVVVNGEVMTDPQAKVDITKDRIVCNG 225
            AGG PKRLA +MS+CRVS +ATCE+LV MG V VNG V  DP  KVD+  D +V NG
Sbjct:  387 AGGYPKRLAGLMSFCRVSDKATCEILVEMGRVTVNGVVARDPGIKVDLLTDIVVANG 443
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BLAST of mRNA_D-mesarthrocarpus_Contig1065.1.1 vs. uniprot
Match: A0A4D9D3K9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3K9_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 7.500e-9
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:   49 VPAGGLPKRLAAVMSYCRVSTRATCEVLVSMGWVVVNGEVMTDPQAKVDITKDRIVCNGE 228
            V  G +P+ +  ++ YCR+S +ATCE+L+ +G V VNG V  DP A VD+ KD+I  +GE
Sbjct:  172 VVGGRIPRTILKLLVYCRLSDKATCEILLELGKVKVNGVVCDDPVALVDLVKDKIEFDGE 231
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BLAST of mRNA_D-mesarthrocarpus_Contig1065.1.1 vs. uniprot
Match: A0A0G4HKE4_9ALVE (SAP domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HKE4_9ALVE)

HSP 1 Score: 54.3 bits (129), Expect = 9.870e-7
Identity = 22/55 (40.00%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:   64 LPKRLAAVMSYCRVSTRATCEVLVSMGWVVVNGEVMTDPQAKVDITKDRIVCNGE 228
            LPK+L   ++YCR+S    C +L+ MG V VNG+++  P   V++ +D+IV   E
Sbjct: 1205 LPKKLGTALTYCRISDSKGCRLLIEMGLVSVNGQIVKSPSTPVNLMRDKIVVKDE 1259
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1065.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FYC7_ECTSI5.960e-1563.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YSP6_9STRA1.730e-1463.64S4 domain-containing protein n=1 Tax=Tribonema min... [more]
A0A6H5JE62_9PHAE8.430e-1463.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9D3K9_9STRA7.500e-946.67Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A0G4HKE4_9ALVE9.870e-740.00SAP domain-containing protein n=1 Tax=Chromera vel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1065contigD-mesarthrocarpus_Contig1065:243..470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog37682.EMT27598
PFAMsPseudoU_synth_2,S4
Model size228
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000455,GO:0000470,GO:0000488,GO:0000489,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009501,GO:0009507,GO:0009536,GO:0009657,GO:0009982,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0019538,GO:0022613,GO:0030490,GO:0031118,GO:0032544,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1901564,GO:1901566,GO:1901576
Exons1
Evalue6.15e-09
EggNOG OGsCOG1187@1|root,2QT4T@2759|Eukaryota,37J18@33090|Viridiplantae,3GFMW@35493|Streptophyta,3KXP9@4447|Liliopsida,3I3UV@38820|Poales
DescriptionRNA pseudouridylate synthase
Cds size228
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789200.4783626-CDS-D-mesarthrocarpus_Contig1065:242..4701680789200.4783626-CDS-D-mesarthrocarpus_Contig1065:242..470Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1065 243..470 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1065.1.1prot_D-mesarthrocarpus_Contig1065.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1065 243..470 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1065.1.1

>prot_D-mesarthrocarpus_Contig1065.1.1 ID=prot_D-mesarthrocarpus_Contig1065.1.1|Name=mRNA_D-mesarthrocarpus_Contig1065.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=76bp
MEAGGGGLKAKATEKAVPAGGLPKRLAAVMSYCRVSTRATCEVLVSMGWV
VVNGEVMTDPQAKVDITKDRIVCNGE
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mRNA from alignment at D-mesarthrocarpus_Contig1065:243..470-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1065.1.1 ID=mRNA_D-mesarthrocarpus_Contig1065.1.1|Name=mRNA_D-mesarthrocarpus_Contig1065.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=228bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1065:243..470- (Discosporangium mesarthrocarpum MT17_79)
ATGGAGGCTGGGGGAGGGGGGTTGAAAGCGAAGGCTACGGAGAAGGCTGT
CCCAGCAGGGGGGTTACCCAAGAGGCTGGCGGCAGTGATGAGCTACTGCC
GGGTGTCCACACGGGCAACCTGTGAGGTCCTAGTGTCCATGGGTTGGGTA
GTGGTCAATGGGGAGGTGATGACAGACCCACAGGCCAAGGTGGACATCAC
CAAGGACAGGATTGTGTGCAACGGTGAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1065:243..470-

>mRNA_D-mesarthrocarpus_Contig1065.1.1 ID=mRNA_D-mesarthrocarpus_Contig1065.1.1|Name=mRNA_D-mesarthrocarpus_Contig1065.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=228bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1065:243..470- (Discosporangium mesarthrocarpum MT17_79)
ATGGAGGCTGGGGGAGGGGGGTTGAAAGCGAAGGCTACGGAGAAGGCTGT
CCCAGCAGGGGGGTTACCCAAGAGGCTGGCGGCAGTGATGAGCTACTGCC
GGGTGTCCACACGGGCAACCTGTGAGGTCCTAGTGTCCATGGGTTGGGTA
GTGGTCAATGGGGAGGTGATGACAGACCCACAGGCCAAGGTGGACATCAC
CAAGGACAGGATTGTGTGCAACGGTGAG
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