mRNA_D-mesarthrocarpus_Contig10517.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10517.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10517.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10517.1.1 vs. uniprot
Match: A0A6H5L404_9PHAE (GAF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L404_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 5.160e-15
Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:    1 SRFFPDVDMAMKTMTSNILAVPVVSRSTGGGNGDVVAVIEMMNKSSGPFDENDKKLVTMLAAHI 192
            + ++  VD+AMKT T N+LAVPV+SRS    +G V+AVIEMMNK  G FDEND+KLV MLAAH+
Sbjct:  295 TNYYQGVDLAMKTTTRNMLAVPVMSRSDEKDDGKVIAVIEMMNKPEG-FDENDEKLVGMLAAHV 357
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BLAST of mRNA_D-mesarthrocarpus_Contig10517.1.1 vs. uniprot
Match: A0A6U0JIP6_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0JIP6_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 6.090e-7
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:    1 SRFFPDVDMAMKTMTSNILAVPVVSRSTGGGNGDVVAVIEMMNKSS-----GPFDENDKKLVTMLAAHI 192
            SRF P+VD      T +I+AVP++ +S G G+  V+  I+M+NK +     G FDEND KL+TMLA H+
Sbjct:  251 SRFNPEVDQKTGFRTRSIIAVPIM-QSEGSGS-RVIGCIQMVNKKNSDFTDGVFDENDAKLLTMLAGHV 317
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BLAST of mRNA_D-mesarthrocarpus_Contig10517.1.1 vs. uniprot
Match: A0A7C2PYQ2_9BACT (GAF domain-containing protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7C2PYQ2_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 4.150e-6
Identity = 28/65 (43.08%), Postives = 39/65 (60.00%), Query Frame = 1 
Query:    4 RFFPDVDMAMKTMTSNILAVPVVSRSTGGGNGDVVAVIEMMNKSSGPFDENDKKLVTMLAAHIAV 198
            RF PDVD      T N+LAVP+        NGD++ V++ +NK SGPF ++D+ L  +LAA   V
Sbjct:   99 RFNPDVDRRTGYRTRNLLAVPMEHL-----NGDLIGVLQALNKPSGPFTQDDEGLARVLAAQAGV 158
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BLAST of mRNA_D-mesarthrocarpus_Contig10517.1.1 vs. uniprot
Match: A0A2E7XCW6_9GAMM (Protein phosphatase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E7XCW6_9GAMM)

HSP 1 Score: 50.8 bits (120), Expect = 1.060e-5
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:    4 RFFPDVDMAMKTMTSNILAVPVVSRSTGGGNGDVVAVIEMMNKSSGPFDENDKKLVTMLAAHIAV 198
            RF PDVD      T +IL++P++     G   ++V V++M+NKS GPFD+ D+ L   LAA  AV
Sbjct:  101 RFNPDVDKRTGYKTESILSIPLI-----GFEQNLVGVLQMLNKSGGPFDDIDELLALSLAAQSAV 160
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BLAST of mRNA_D-mesarthrocarpus_Contig10517.1.1 vs. uniprot
Match: A0A7V7DU70_9DELT (GAF domain-containing protein n=2 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V7DU70_9DELT)

HSP 1 Score: 48.1 bits (113), Expect = 9.620e-5
Identity = 23/65 (35.38%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:    4 RFFPDVDMAMKTMTSNILAVPVVSRSTGGGNGDVVAVIEMMNKSSGPFDENDKKLVTMLAAHIAV 198
            RF+ DVD      T NIL +P+++R     +GD +  ++++NK SG F+END +L+  +  +I +
Sbjct:  119 RFYRDVDRLTHFKTRNILCLPLINR-----HGDCIGTLQIINKISGRFNENDLELLASVCHYITI 178
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10517.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L404_9PHAE5.160e-1562.50GAF domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6U0JIP6_9STRA6.090e-746.38Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7C2PYQ2_9BACT4.150e-643.08GAF domain-containing protein n=1 Tax=Phycisphaera... [more]
A0A2E7XCW6_9GAMM1.060e-543.08Protein phosphatase n=1 Tax=Gammaproteobacteria ba... [more]
A0A7V7DU70_9DELT9.620e-535.38GAF domain-containing protein n=2 Tax=Deltaproteob... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10517contigD-mesarthrocarpus_Contig10517:38..235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G6S1
Preferred nameTMEM65
PFAMsGAF,TMEM65
Model size198
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003205,GO:0003231,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005886,GO:0005911,GO:0007275,GO:0007507,GO:0008016,GO:0008150,GO:0014704,GO:0016020,GO:0019866,GO:0023051,GO:0030054,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044057,GO:0044291,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0048513,GO:0048731,GO:0048856,GO:0050789,GO:0051239,GO:0065007,GO:0071944,GO:0072359,GO:1903522,GO:1903779
Exons1
Evalue2.77e-14
EggNOG OGsKOG3689@1|root,KOG4619@1|root,KOG3689@2759|Eukaryota,KOG4619@2759|Eukaryota
Ec32 ortholog descriptionGAF domain
Ec32 orthologEc-26_000330.1
Descriptionregulation of cardiac conduction
Cds size174
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789188.3540685-UTR-D-mesarthrocarpus_Contig10517:37..611680789188.3540685-UTR-D-mesarthrocarpus_Contig10517:37..61Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10517 38..61 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789188.365919-CDS-D-mesarthrocarpus_Contig10517:61..2351680789188.365919-CDS-D-mesarthrocarpus_Contig10517:61..235Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10517 62..235 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10517.1.1prot_D-mesarthrocarpus_Contig10517.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10517 62..235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10517.1.1

>prot_D-mesarthrocarpus_Contig10517.1.1 ID=prot_D-mesarthrocarpus_Contig10517.1.1|Name=mRNA_D-mesarthrocarpus_Contig10517.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=58bp
MAMKTMTSNILAVPVVSRSTGGGNGDVVAVIEMMNKSSGPFDENDKKLVT
MLAAHIAV
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mRNA from alignment at D-mesarthrocarpus_Contig10517:38..235+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10517.1.1 ID=mRNA_D-mesarthrocarpus_Contig10517.1.1|Name=mRNA_D-mesarthrocarpus_Contig10517.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=198bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10517:38..235+ (Discosporangium mesarthrocarpum MT17_79)
AGCCGTTTCTTCCCAGATGTGGACATGGCCATGAAGACCATGACCAGCAA
TATACTGGCGGTGCCGGTCGTCAGCCGTAGCACTGGGGGGGGCAATGGGG
ATGTGGTTGCTGTGATTGAGATGATGAACAAATCATCGGGTCCGTTCGAT
GAGAACGACAAGAAGCTTGTGACAATGCTTGCGGCGCATATTGCTGTG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10517:38..235+

>mRNA_D-mesarthrocarpus_Contig10517.1.1 ID=mRNA_D-mesarthrocarpus_Contig10517.1.1|Name=mRNA_D-mesarthrocarpus_Contig10517.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=174bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10517:38..235+ (Discosporangium mesarthrocarpum MT17_79)
ATGGCCATGAAGACCATGACCAGCAATATACTGGCGGTGCCGGTCGTCAG
CCGTAGCACTGGGGGGGGCAATGGGGATGTGGTTGCTGTGATTGAGATGA
TGAACAAATCATCGGGTCCGTTCGATGAGAACGACAAGAAGCTTGTGACA
ATGCTTGCGGCGCATATTGCTGTG
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