mRNA_D-mesarthrocarpus_Contig1050.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
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Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig1050.2.1 vs. uniprot
Match: A0A6H5J909_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J909_9PHAE) HSP 1 Score: 135 bits (340), Expect = 1.150e-32 Identity = 88/207 (42.51%), Postives = 112/207 (54.11%), Query Frame = 3
Query: 57 PGRQETEAQKREDRSMHELYRLVSRAAQAVTLSGVLAEVIQRCP----ALSSSLPWGRLQGAALWRLVCGREEHSRVTSLLAALVRPDS--GVPLTLREDYVRQLGQECPFYFGEGDVAAFEGLELLRRARGVMAHDAKLGLGYGGSEESDALILQGSAKLSEAASSWRPGDVLEPRGQLDRACDALLEVGKAFGVVDVCLSCAQGF 659
P ++ +A KRE +H YRLVSRAA+AV ++GVLA A ++PW L G LWRLV G +EH R + LLA LV + R DY R+LG C +FG GD FEG+ELLRRA + E+DA +G+ L+EAA WR L GQL RAC AL VG+ VVDVC++CA+ F
Sbjct: 234 PQQRNQKALKREALEVHAAYRLVSRAAEAVRMAGVLARAAASSAVGGAAAVDNVPWSSLDGVPLWRLVTGGDEHRRASFLLADLVGATTKGNNNAESRRDYARELGSWCRGFFGAGDRQTFEGVELLRRAAASGXXXXXXXXRLTAAAEADA--RRGAELLAEAAREWRGERALGADGQLARACAALTAVGRLEAVVDVCMTCAKNF 438
BLAST of mRNA_D-mesarthrocarpus_Contig1050.2.1 vs. uniprot
Match: A0A7S2YFK1_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YFK1_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 1.240e-10 Identity = 61/223 (27.35%), Postives = 101/223 (45.29%), Query Frame = 3
Query: 78 AQKREDRSMHELYRLVSRAAQAVTLSGVL--AEVIQRCPALSSSLPWGRLQGAALWRLVCGREEHSRVTSLLAALV-----RPDSGVPLTLREDYVR-QLGQECPFYFGEGDVAAFEGLELLRRARGVMAHDAKLGLGYGGSEESDALILQGSAKLSEAASSWRPGDV---------------------LEPRGQLDRACDALLEVGKAFGVVDVCLSCAQGF 659
AQ E+R++H LYRL+SRA+Q + L +L +E I P + WG L GA + +LV H R+ +LL LV + P+ + D + +L Q+C YF ++GL L A ++H GS +Q ++ L++AA +W+ + ++ R L RA D L+++ VV++C + +Q F
Sbjct: 893 AQVLEERNIHSLYRLISRASQLLHLLSLLLRSEGISGLP----QIDWGHLHGATVSQLVQSSAGHERLAALLNDLVVATASNTATSSPVVTQADQIAIELAQQCYLYFPPASRFTYQGLRLANEA---LSHPF-------GSSSRRQTGIQAASILTDAARNWQSASLVTGRIVRGSGKENYKEIAERAIKHRSPLARAADLLIQLEDVSNVVELCFTTSQNF 1101
BLAST of mRNA_D-mesarthrocarpus_Contig1050.2.1 vs. uniprot
Match: A0A7S2LDJ9_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LDJ9_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 2.210e-6 Identity = 57/205 (27.80%), Postives = 84/205 (40.98%), Query Frame = 3
Query: 90 EDRSMHELYRLVSRAAQAVTLSGVLAEVIQRCPALSSS--------LPWGRLQGAALWRLVCGREEHS-RVTSLLAALVRPDS--GVPLTLREDYVRQLGQECPFYFGEGDVAAFEGLELLRRARGVMAHDAKLGLGYGGSEESDALIL----QGSAKLSEAASSWRPGDVLEPRGQLDRACDALLEVGKAFGVVDVCLSCAQGF 659
E +S+H LYRL++R Q +TL +L RC S++ + WG L LVC H+ R+ +LL L ++ T +ED L +C Y+ G L V + + S LIL + + A+SS P L + C AL +VG+ G+V VCL+CA F
Sbjct: 123 EHKSLHSLYRLITRTQQLLTLLHILRT---RCSGSSNTSSNTSMMVVEWGLLSSIRTCDLVCHPTAHTERIGALLHTLFTSNTTXXXXXTNKEDLSAMLQTQCYLYYSPASRYVHRGYVALNAHEDV-EEAVQCWVAAAKCWRSPGLILGSFGAATGNTNSASSSLSP---------LTQVCRALADVGQYVGIVQVCLTCAANF 314
BLAST of mRNA_D-mesarthrocarpus_Contig1050.2.1 vs. uniprot
Match: A0A7S4AWN6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AWN6_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 6.070e-5 Identity = 59/214 (27.57%), Postives = 92/214 (42.99%), Query Frame = 3
Query: 90 EDRSMHELYRLVSRAAQAVTLSGVLAEVIQRCPALSSSLPWGRLQGAALWRLVCGREEHSRVTSLLAALVRP--DSGVPLTLREDYV-RQLGQECPFYFGEGDVAAFEGLELLRRARGVMAHDAKLGLGYGGSEESDALILQGSAKLSEAASSWRP-----GDVLEPR----------------GQLDRACDALLEVGKAFGVVDVCLSCAQGF 659
E+RS+H LYRL+SR Q ++L L P L + WG L G + +LV R+ +LL LV D+ + +++ L Q+C YF G+ ++ G ++ + A L L +G + + + + L EAA +W G VL+ R L RA L ++ G+VDVCL+ A F
Sbjct: 1211 EERSIHSLYRLLSRITQLLSLLSCLRRA-HSMPDLPE-VEWGLLHGITVSQLVETSYGQERIENLLNKLVTSGFDNMTMASADANHLANMLSQQCYHYFSPGNRYSYLGFQMAKEA---------LSLPHGQARRA-VRANEAAGYLKEAAKNWFSPTLITGRVLQTRESERYFEIAERAIKYNSPLARATSLLDDLEDVEGLVDVCLTTAMNF 1412 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1050.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig1050.2.1 >prot_D-mesarthrocarpus_Contig1050.2.1 ID=prot_D-mesarthrocarpus_Contig1050.2.1|Name=mRNA_D-mesarthrocarpus_Contig1050.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=240bp MMPGALRQHQNQHQHQQDPGRQETEAQKREDRSMHELYRLVSRAAQAVTLback to top mRNA from alignment at D-mesarthrocarpus_Contig1050:514..1235+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig1050.2.1 ID=mRNA_D-mesarthrocarpus_Contig1050.2.1|Name=mRNA_D-mesarthrocarpus_Contig1050.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=722bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1050:514..1235+ (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1050:514..1235+ >mRNA_D-mesarthrocarpus_Contig1050.2.1 ID=mRNA_D-mesarthrocarpus_Contig1050.2.1|Name=mRNA_D-mesarthrocarpus_Contig1050.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=720bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1050:514..1235+ (Discosporangium mesarthrocarpum MT17_79)back to top |