mRNA_D-mesarthrocarpus_Contig1050.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1050.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig1050.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig1050.2.1 vs. uniprot
Match: A0A6H5J909_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J909_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 1.150e-32
Identity = 88/207 (42.51%), Postives = 112/207 (54.11%), Query Frame = 3
Query:   57 PGRQETEAQKREDRSMHELYRLVSRAAQAVTLSGVLAEVIQRCP----ALSSSLPWGRLQGAALWRLVCGREEHSRVTSLLAALVRPDS--GVPLTLREDYVRQLGQECPFYFGEGDVAAFEGLELLRRARGVMAHDAKLGLGYGGSEESDALILQGSAKLSEAASSWRPGDVLEPRGQLDRACDALLEVGKAFGVVDVCLSCAQGF 659
            P ++  +A KRE   +H  YRLVSRAA+AV ++GVLA           A   ++PW  L G  LWRLV G +EH R + LLA LV   +        R DY R+LG  C  +FG GD   FEG+ELLRRA                + E+DA   +G+  L+EAA  WR    L   GQL RAC AL  VG+   VVDVC++CA+ F
Sbjct:  234 PQQRNQKALKREALEVHAAYRLVSRAAEAVRMAGVLARAAASSAVGGAAAVDNVPWSSLDGVPLWRLVTGGDEHRRASFLLADLVGATTKGNNNAESRRDYARELGSWCRGFFGAGDRQTFEGVELLRRAAASGXXXXXXXXRLTAAAEADA--RRGAELLAEAAREWRGERALGADGQLARACAALTAVGRLEAVVDVCMTCAKNF 438          
BLAST of mRNA_D-mesarthrocarpus_Contig1050.2.1 vs. uniprot
Match: A0A7S2YFK1_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YFK1_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.240e-10
Identity = 61/223 (27.35%), Postives = 101/223 (45.29%), Query Frame = 3
Query:   78 AQKREDRSMHELYRLVSRAAQAVTLSGVL--AEVIQRCPALSSSLPWGRLQGAALWRLVCGREEHSRVTSLLAALV-----RPDSGVPLTLREDYVR-QLGQECPFYFGEGDVAAFEGLELLRRARGVMAHDAKLGLGYGGSEESDALILQGSAKLSEAASSWRPGDV---------------------LEPRGQLDRACDALLEVGKAFGVVDVCLSCAQGF 659
            AQ  E+R++H LYRL+SRA+Q + L  +L  +E I   P     + WG L GA + +LV     H R+ +LL  LV        +  P+  + D +  +L Q+C  YF       ++GL L   A   ++H         GS       +Q ++ L++AA +W+   +                     ++ R  L RA D L+++     VV++C + +Q F
Sbjct:  893 AQVLEERNIHSLYRLISRASQLLHLLSLLLRSEGISGLP----QIDWGHLHGATVSQLVQSSAGHERLAALLNDLVVATASNTATSSPVVTQADQIAIELAQQCYLYFPPASRFTYQGLRLANEA---LSHPF-------GSSSRRQTGIQAASILTDAARNWQSASLVTGRIVRGSGKENYKEIAERAIKHRSPLARAADLLIQLEDVSNVVELCFTTSQNF 1101          
BLAST of mRNA_D-mesarthrocarpus_Contig1050.2.1 vs. uniprot
Match: A0A7S2LDJ9_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LDJ9_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.210e-6
Identity = 57/205 (27.80%), Postives = 84/205 (40.98%), Query Frame = 3
Query:   90 EDRSMHELYRLVSRAAQAVTLSGVLAEVIQRCPALSSS--------LPWGRLQGAALWRLVCGREEHS-RVTSLLAALVRPDS--GVPLTLREDYVRQLGQECPFYFGEGDVAAFEGLELLRRARGVMAHDAKLGLGYGGSEESDALIL----QGSAKLSEAASSWRPGDVLEPRGQLDRACDALLEVGKAFGVVDVCLSCAQGF 659
            E +S+H LYRL++R  Q +TL  +L     RC   S++        + WG L       LVC    H+ R+ +LL  L   ++      T +ED    L  +C  Y+         G   L     V     +  +       S  LIL      +   + A+SS  P         L + C AL +VG+  G+V VCL+CA  F
Sbjct:  123 EHKSLHSLYRLITRTQQLLTLLHILRT---RCSGSSNTSSNTSMMVVEWGLLSSIRTCDLVCHPTAHTERIGALLHTLFTSNTTXXXXXTNKEDLSAMLQTQCYLYYSPASRYVHRGYVALNAHEDV-EEAVQCWVAAAKCWRSPGLILGSFGAATGNTNSASSSLSP---------LTQVCRALADVGQYVGIVQVCLTCAANF 314          
BLAST of mRNA_D-mesarthrocarpus_Contig1050.2.1 vs. uniprot
Match: A0A7S4AWN6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AWN6_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 6.070e-5
Identity = 59/214 (27.57%), Postives = 92/214 (42.99%), Query Frame = 3
Query:   90 EDRSMHELYRLVSRAAQAVTLSGVLAEVIQRCPALSSSLPWGRLQGAALWRLVCGREEHSRVTSLLAALVRP--DSGVPLTLREDYV-RQLGQECPFYFGEGDVAAFEGLELLRRARGVMAHDAKLGLGYGGSEESDALILQGSAKLSEAASSWRP-----GDVLEPR----------------GQLDRACDALLEVGKAFGVVDVCLSCAQGF 659
            E+RS+H LYRL+SR  Q ++L   L       P L   + WG L G  + +LV       R+ +LL  LV    D+    +   +++   L Q+C  YF  G+  ++ G ++ + A         L L +G +  +     + +  L EAA +W       G VL+ R                  L RA   L ++    G+VDVCL+ A  F
Sbjct: 1211 EERSIHSLYRLLSRITQLLSLLSCLRRA-HSMPDLPE-VEWGLLHGITVSQLVETSYGQERIENLLNKLVTSGFDNMTMASADANHLANMLSQQCYHYFSPGNRYSYLGFQMAKEA---------LSLPHGQARRA-VRANEAAGYLKEAAKNWFSPTLITGRVLQTRESERYFEIAERAIKYNSPLARATSLLDDLEDVEGLVDVCLTTAMNF 1412          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1050.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5J909_9PHAE1.150e-3242.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2YFK1_9STRA1.240e-1027.35Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S2LDJ9_9STRA2.210e-627.80Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S4AWN6_9STRA6.070e-527.57Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1050contigD-mesarthrocarpus_Contig1050:514..1235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog35128.Thaps20620
PFAMsNucleoporin_N
Model size722
Max annot lvl2836|Bacillariophyta
KEGG koko:K14312
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.61e-10
EggNOG OGsCOG5308@1|root,KOG1900@2759|Eukaryota,2XCYT@2836|Bacillariophyta
Descriptionprotein localization to nuclear inner membrane
Cds size720
COG categoryUY
BRITEko00000,ko00001,ko00002,ko03019
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789186.7224047-UTR-D-mesarthrocarpus_Contig1050:513..5151680789186.7224047-UTR-D-mesarthrocarpus_Contig1050:513..515Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1050 514..515 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789186.7371073-CDS-D-mesarthrocarpus_Contig1050:515..12351680789186.7371073-CDS-D-mesarthrocarpus_Contig1050:515..1235Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1050 516..1235 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1050.2.1prot_D-mesarthrocarpus_Contig1050.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1050 516..1235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1050.2.1

>prot_D-mesarthrocarpus_Contig1050.2.1 ID=prot_D-mesarthrocarpus_Contig1050.2.1|Name=mRNA_D-mesarthrocarpus_Contig1050.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=240bp
MMPGALRQHQNQHQHQQDPGRQETEAQKREDRSMHELYRLVSRAAQAVTL
SGVLAEVIQRCPALSSSLPWGRLQGAALWRLVCGREEHSRVTSLLAALVR
PDSGVPLTLREDYVRQLGQECPFYFGEGDVAAFEGLELLRRARGVMAHDA
KLGLGYGGSEESDALILQGSAKLSEAASSWRPGDVLEPRGQLDRACDALL
EVGKAFGVVDVCLSCAQGFTDPMSEVGGGGEGEASAATVA
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mRNA from alignment at D-mesarthrocarpus_Contig1050:514..1235+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1050.2.1 ID=mRNA_D-mesarthrocarpus_Contig1050.2.1|Name=mRNA_D-mesarthrocarpus_Contig1050.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=722bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1050:514..1235+ (Discosporangium mesarthrocarpum MT17_79)
ACATGATGCCAGGGGCTCTGCGGCAGCATCAGAACCAGCACCAGCACCAG CAAGACCCAGGGAGGCAGGAGACAGAGGCCCAGAAGCGGGAGGACCGGAG CATGCACGAGCTCTACCGCCTGGTGAGCCGGGCGGCACAGGCGGTGACAC TCTCAGGGGTGCTGGCCGAGGTGATCCAGAGGTGTCCCGCACTGTCTTCA TCCCTGCCCTGGGGCAGGCTTCAGGGCGCTGCCCTGTGGCGGCTGGTGTG TGGGCGAGAGGAGCACAGCAGGGTCACCTCGCTCCTCGCTGCCCTTGTGA GGCCAGACAGTGGCGTGCCACTCACCCTGAGGGAGGACTATGTCCGTCAG CTCGGGCAAGAGTGCCCCTTCTACTTTGGAGAGGGGGACGTTGCCGCCTT TGAAGGCCTGGAGCTCCTGAGGAGGGCCCGCGGGGTAATGGCCCATGATG CCAAGTTGGGGCTGGGGTATGGGGGCAGTGAGGAGTCAGATGCCCTGATC CTCCAGGGCTCAGCAAAGCTGTCAGAGGCAGCCTCCTCGTGGCGCCCGGG GGATGTGCTGGAGCCCCGGGGGCAGCTGGACCGGGCCTGTGATGCACTCC TGGAGGTCGGAAAGGCCTTCGGGGTGGTGGATGTGTGCCTCAGTTGCGCC CAGGGCTTCACGGACCCCATGTCAGAGGTTGGGGGCGGAGGGGAGGGGGA GGCGTCGGCAGCCACGGTGGCC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1050:514..1235+

>mRNA_D-mesarthrocarpus_Contig1050.2.1 ID=mRNA_D-mesarthrocarpus_Contig1050.2.1|Name=mRNA_D-mesarthrocarpus_Contig1050.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=720bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1050:514..1235+ (Discosporangium mesarthrocarpum MT17_79)
ATGATGCCAGGGGCTCTGCGGCAGCATCAGAACCAGCACCAGCACCAGCA
AGACCCAGGGAGGCAGGAGACAGAGGCCCAGAAGCGGGAGGACCGGAGCA
TGCACGAGCTCTACCGCCTGGTGAGCCGGGCGGCACAGGCGGTGACACTC
TCAGGGGTGCTGGCCGAGGTGATCCAGAGGTGTCCCGCACTGTCTTCATC
CCTGCCCTGGGGCAGGCTTCAGGGCGCTGCCCTGTGGCGGCTGGTGTGTG
GGCGAGAGGAGCACAGCAGGGTCACCTCGCTCCTCGCTGCCCTTGTGAGG
CCAGACAGTGGCGTGCCACTCACCCTGAGGGAGGACTATGTCCGTCAGCT
CGGGCAAGAGTGCCCCTTCTACTTTGGAGAGGGGGACGTTGCCGCCTTTG
AAGGCCTGGAGCTCCTGAGGAGGGCCCGCGGGGTAATGGCCCATGATGCC
AAGTTGGGGCTGGGGTATGGGGGCAGTGAGGAGTCAGATGCCCTGATCCT
CCAGGGCTCAGCAAAGCTGTCAGAGGCAGCCTCCTCGTGGCGCCCGGGGG
ATGTGCTGGAGCCCCGGGGGCAGCTGGACCGGGCCTGTGATGCACTCCTG
GAGGTCGGAAAGGCCTTCGGGGTGGTGGATGTGTGCCTCAGTTGCGCCCA
GGGCTTCACGGACCCCATGTCAGAGGTTGGGGGCGGAGGGGAGGGGGAGG
CGTCGGCAGCCACGGTGGCC
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