mRNA_D-mesarthrocarpus_Contig10455.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10455.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10455.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10455.1.1 vs. uniprot
Match: D7G1I2_ECTSI (PsbB mRNA maturation factor Mbb1, chloroplast n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I2_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 3.150e-35
Identity = 88/176 (50.00%), Postives = 103/176 (58.52%), Query Frame = 1 
Query:    1 LPQGNLETALKITQAATARFPWDQSLLQTQGTVQGRLGRPNEARECYRRSIEIRPAAPAYVAWALLEDSLATRLVHSDGYSAVYCPAKYSTEAGGGVGGVVGLHGETGAAAGAEIDKGGAGAGRKEEGHGG-----------RELAGIDGHEEARRLFGLGLRADPTHGPLYNAFG 495
            + +GNLETALKI +AATARFPWD+ LLQT GTV G+LGR  EA ECYRRSI + PAAPAYVAWAL+   LA R   +          KY   AG  V   VG   + G   G   D    G+G   + + G            E  G   +EEARRLF LG+ ADPTHGPLYNA+G
Sbjct:  420 IKEGNLETALKIAEAATARFPWDKFLLQTMGTVHGKLGRYEEAIECYRRSIALSPAAPAYVAWALVVAKLAERAERNASSKKTAAGPKYGVVAGDPVVEYVGDASDDGTILGEASDAVAGGSGGTADENDGXXXXEGGVSRTEEEEGPPSYEEARRLFELGILADPTHGPLYNAYG 595
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BLAST of mRNA_D-mesarthrocarpus_Contig10455.1.1 vs. uniprot
Match: A0A6H5L0Y9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Y9_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 2.290e-28
Identity = 80/167 (47.90%), Postives = 93/167 (55.69%), Query Frame = 1 
Query:   28 LKITQAATARFPWDQSLLQTQGTVQGRLGRPNEARECYRRSIEIRPAAPAYVAWALLEDSLATRLVHSDGYSAVYCPAKYSTEAGGGVGGVVGLHGETGAAAGAEIDK--GGAGAGRKEEGHGGRELAGID---------GHEEARRLFGLGLRADPTHGPLYNAFG 495
            LKI +AATARFPWD+ LLQT GTV G+LGR  EA ECYRRSI + PAAPAYVAWAL+   LA R   +          +    AG  V   VG   + G   G   D   GG+G    E         G+           +EEARRLF LG+ ADPTHGPLYNA+G
Sbjct:  508 LKIAEAATARFPWDKFLLQTMGTVHGKLGRYEEAIECYRRSIALSPAAPAYVAWALVVAKLAERAERNASSKETAAGQEQDVVAGDPVVEYVGDASDDGTILGEASDAVAGGSGGTAAEXXXXXXXXXGVSRTEEEEGPPSYEEARRLFELGILADPTHGPLYNAYG 674
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BLAST of mRNA_D-mesarthrocarpus_Contig10455.1.1 vs. uniprot
Match: A0A7S2DH37_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DH37_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 6.900e-12
Identity = 51/161 (31.68%), Postives = 76/161 (47.20%), Query Frame = 1 
Query:   13 NLETALKITQAATARFPWDQSLLQTQGTVQGRLGRPNEARECYRRSIEIRPAAPAYVAWALLEDSLATRLVHSDGYSAVYCPAKYSTEAGGGVGGVVGLHGETGAAAGAEIDKGGAGAGRKEEGHGGRELAGIDGHEEARRLFGLGLRADPTHGPLYNAFG 495
            NL  ++++ + A  +FP D SL QT GTV  R G    AR+ ++RS  ++P+APAYVAW L+E+     ++                                               G K++G    ++  +    EARRLF LG++ADP+HGPLYNA+G
Sbjct:  241 NLNKSVELLEEAVEKFPADHSLHQTFGTVLERTGDIPRARKAFKRSTTLKPSAPAYVAWGLMEER--HHMIQ----------------------------------------------GEKQKG----KIRVV----EARRLFELGIKADPSHGPLYNAYG 345
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BLAST of mRNA_D-mesarthrocarpus_Contig10455.1.1 vs. uniprot
Match: A0A835Z4V8_9STRA (PsbB mRNA maturation factor Mbb1, chloroplast n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4V8_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.540e-8
Identity = 47/126 (37.30%), Postives = 60/126 (47.62%), Query Frame = 1 
Query:  139 YRRSIEIRPAAPAYVAWALLEDSLATRLVHSDGYSAVYCPAKYSTEAGGGVGGVV-------GLHGETGAAAGAEIDKGGAGAGRKEEGHGGRELAGIDGHEEARRLFGLGLRADPTHGPLYNAFG 495
            YR S +IRP APA+VAWALLED LA     +   +    P+  S E       ++       GL     A A A++++  A                      ARRLF LG+RADP HGPLYNA+G
Sbjct:  363 YRASTQIRPTAPAFVAWALLEDKLAAERAAAAXXATDLTPSPNSKEDDDATDAILTSTGKRLGLERARSAEADADVERCRA---------------------NARRLFELGIRADPKHGPLYNAYG 467
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BLAST of mRNA_D-mesarthrocarpus_Contig10455.1.1 vs. uniprot
Match: R7Q4Y4_CHOCR (TPR repeat-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4Y4_CHOCR)

HSP 1 Score: 55.1 bits (131), Expect = 9.500e-6
Identity = 26/66 (39.39%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:    7 QGNLETALKITQAATARFPWDQSLLQTQGTVQGRLGRPNEARECYRRSIEIRPAAPAYVAWALLED 204
            +G ++ A  I Q      P D +LLQ+ G ++ + G+   AR+ + +S+ ++PA PA+VAWALLED
Sbjct:  386 RGKVDEARSILQRGHMMHPKDPALLQSLGILEDKCGKTEVARKLFYKSVCVKPAGPAFVAWALLED 451
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BLAST of mRNA_D-mesarthrocarpus_Contig10455.1.1 vs. uniprot
Match: A0A7S0P5C9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P5C9_9EUKA)

HSP 1 Score: 52.4 bits (124), Expect = 6.990e-5
Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:   25 ALKITQAATARFPWDQSLLQTQGTVQGRLGRPNEARECYRRSIEIRPAAPAYVAWALLEDS 207
            AL +   A   FP + SLLQT+G++  R G   +AR+ +  S+     APAYVAWALLE++
Sbjct:   56 ALAVVDEALDLFPQEGSLLQTRGSLLHRTGAVEDARQAFAASVRRGGGAPAYVAWALLEEA 116
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10455.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G1I2_ECTSI3.150e-3550.00PsbB mRNA maturation factor Mbb1, chloroplast n=1 ... [more]
A0A6H5L0Y9_9PHAE2.290e-2847.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2DH37_9STRA6.900e-1231.68Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835Z4V8_9STRA1.540e-837.30PsbB mRNA maturation factor Mbb1, chloroplast n=1 ... [more]
R7Q4Y4_CHOCR9.500e-639.39TPR repeat-containing protein n=1 Tax=Chondrus cri... [more]
A0A7S0P5C9_9EUKA6.990e-544.26Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10455contigD-mesarthrocarpus_Contig10455:25..2787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G1I2
Preferred nameTTC6
PFAMsTPR_1,TPR_11,TPR_14,TPR_16,TPR_19,TPR_8
Model size498
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00078
KEGG koko:K00951,ko:K12869
KEGG ReactionR00429
KEGG Pathwayko00230,ko03040,map00230,map03040
KEGG ModuleM00355
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.17e-36
EggNOG OGsCOG0457@1|root,KOG1124@2759|Eukaryota
Ec32 ortholog descriptionPsbB mRNA maturation factor Mbb1, chloroplast precursor
Ec32 orthologEc-07_001100.1
EC2.7.6.5
Descriptioncellular component assembly
Cds size498
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789183.6055634-CDS-D-mesarthrocarpus_Contig10455:24..1201680789183.6055634-CDS-D-mesarthrocarpus_Contig10455:24..120Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10455 25..120 +
1680789183.6197724-CDS-D-mesarthrocarpus_Contig10455:561..7381680789183.6197724-CDS-D-mesarthrocarpus_Contig10455:561..738Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10455 562..738 +
1680789183.6328492-CDS-D-mesarthrocarpus_Contig10455:2562..27871680789183.6328492-CDS-D-mesarthrocarpus_Contig10455:2562..2787Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10455 2563..2787 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10455.1.1prot_D-mesarthrocarpus_Contig10455.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10455 25..2787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10455.1.1

>prot_D-mesarthrocarpus_Contig10455.1.1 ID=prot_D-mesarthrocarpus_Contig10455.1.1|Name=mRNA_D-mesarthrocarpus_Contig10455.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=166bp
LPQGNLETALKITQAATARFPWDQSLLQTQGTVQGRLGRPNEARECYRRS
IEIRPAAPAYVAWALLEDSLATRLVHSDGYSAVYCPAKYSTEAGGGVGGV
VGLHGETGAAAGAEIDKGGAGAGRKEEGHGGRELAGIDGHEEARRLFGLG
LRADPTHGPLYNAFG*
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mRNA from alignment at D-mesarthrocarpus_Contig10455:25..2787+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10455.1.1 ID=mRNA_D-mesarthrocarpus_Contig10455.1.1|Name=mRNA_D-mesarthrocarpus_Contig10455.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2763bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10455:25..2787+ (Discosporangium mesarthrocarpum MT17_79)
CTGCCGCAGGGCAACCTGGAGACGGCGTTAAAGATCACCCAGGCGGCCAC
CGCACGGTTCCCCTGGGACCAGAGCCTCCTCCAGACACAGGGGACGGTGA
GACAGAATGAGAGATGCAGGTTGTGTTGTTGCCATCACGCATGGTCTCAA
TCGTGTGGAAACCCACAGTCCCAAGGGTGAGGAAAAATGAAAATAGGAAG
AAAAAGGAGAACAGACCAGGGGCGCAAGGACTAGAATGCCTGGGGCGGTG
CCGCTTTGCCGCAGCTCTGAAGAAAGAGAAAAAGGAAAGAAAGAAAAAAG
GGAGTGAAGTGTACGCCTAGTAAGTCTTCAGATATTCGGGGTGAGAGAGA
GAGAGAGAGTGAGAGAGAGTTATAAGGTTGTAAGGTTGTAAGGTTGTAAT
GTTTTAACTATTCTTCGTATTGAAGAAAAATATACTGAGGTTAGGCCTAG
TAATGCCTACCGCCTGCCCTGACCCTGCTCAGCCCTGAAACCAAGCCTTT
GGATGAACAAATCACACATATAACTACCCACCACCAGGTCCAGGGCCGTC
TGGGGCGCCCTAACGAGGCTCGAGAGTGCTATCGGCGGAGCATAGAGATA
CGACCCGCTGCCCCAGCCTACGTGGCCTGGGCGCTTCTCGAGGACTCCTT
GGCCACGAGGTTGGTACACAGTGATGGATACAGTGCAGTGTATTGTCCAG
CAAAGTACAGCACAGTGCAGTATATCATCCAGTATAGTAGGGTACAGTAC
AGTGTATTTTCCAGTATAGCACAGTACAGTTTAGTATATTATCCGGTATG
GTACAGTACAGTTTAGCATATTATCCGGTATAGCATCAGTACAGTGCGGT
ATATTTTCCAGTGTAGTATCAGTACAGTGCAGCCTTCGATTCAGTACAGC
ACAGTACTGTTAAGTTCAGCATATCATTCAGTGCAATGCAGTACGGTTCA
CCTTTCCGTGTGGTACAGCATACTTCTGCGGCACAGCGCAGTACCAAAAT
CTGCCACTTTTGTGAGGGAAATGGGATGAAGGACGCCGGTATGGTGAAGC
AGGACAAAAAATCGGAGTGCTGTACGAACTGATGTGATGGCGTGTAGGCT
ACGAAGTATAGTGTGACCGGACACCCTCCTGAAGTGTTTCACTCAGCAGG
AGTAGTTGTCGTCAGTGCTCATATAAAACCTACGAGATTTTTCGTGCGAG
ATTTTGGTTTGAGGTTTCGCATGAGATTTTTTTTTTTTTGCATGAGGTTT
TTTGCGTGAGGTTTTTTTGTTGTGAGATCTTGTGCGAGATTTTTGTATGA
GGTTTTGCATGAGATTTTGTGTGGGGTTTGGTATGAGATTTTGTATGGGC
GCTGAACACCACCCCTGAACGGGACAGGAGAAGCACGTGTGTGCAGTTGT
TACATTTAGGCAGCGCAGCACAGTCATGCAAGGGGCCGCCATGAAGCACT
CGTGTGCTTGAGACAATGAGCAACTGCCAAGAACAAACCAGTGCACAAAC
GCAACGCACTGTTCCGAAAAAGAACCAGTACAGTGCATAATGAACTGTAC
TGTACAGTGCATAATGAACTGTACTGTACAGTGCATAATGAATTGTACTG
TACAGTGCATAATGACCTGTACTGTACAGTGCATAATGACCTGTACTGTA
CAGTGCATAATGAACTGTACTGTACAGTGCATAATGAACTGTACTGTACA
GTGCATAATGACCTGTACTGTACAGTGCATAATGAACTGTACTGTACAGT
GCATAATGAATTGTACTGTACAGTGCATAATGAATTGTACTGTACAGTGC
ATACTGAACTGTACTGTACAGTGCATAATGAACTGTACTGTACAGTGCAT
AATGAACTGTACTGTACAGTGCATAATGAATTGTACTGTGCAGTGCATAA
TGAATTGTACTGTACAGTGCATAATGAACTGCATTGTACACCGCATTATT
AATTGTACTGTTCACCACACAATGAATTGCATTGTACACCACATTATTAA
TTGTACTGTACACCACATAATGAATTGTACTGTTCACCACATAATGAATT
GTACTGTTCACCACATAATGAATTGTACCATGCACCACATGATCAATTGT
ACCATACACCACATGATCAATTGTACCGTACACCACATGATTAACTGTAC
CGTACACCACATGATCAATTGTACTGTACACCACATGATCAATTGTACTG
TACACCACATGATCAATTGTACCATACACCCCATGATTAACTGTACTGTA
CACCCCATGATTAACTATACTGTACACCCCATGATTAACTGTACTGTACA
CCCCATGATTAACTATACTGTACACCCCATGATTAACTGTACTGTACACC
CCATTATTAACTACACTGTACAGTGCAGTGTGGGACTTCGACAGTGCTGT
GATTCTCACTCTTTCATACCCATCACAACTGCCAGGAAGGAGAGGGAGAG
GGTGGTGGCAGAGGTCTCTGGGGCAGGGCCAGGGGCGGGGCAGGGGGCCC
CTGACGGCAGGGGTCGGGGGGAGGACAATGGGGAGAAGGAGGCCGGGGGC
GGAGTAGGGGGTGTCGTAGGCCTTCACGGGGAGACGGGGGCAGCGGCAGG
GGCCGAGATTGATAAGGGGGGGGCTGGGGCTGGGCGGAAGGAGGAGGGGC
ATGGGGGGAGGGAGCTGGCGGGGATCGATGGGCACGAGGAGGCCCGGAGG
CTCTTTGGGCTGGGGCTCCGGGCAGACCCAACACATGGCCCGCTCTACAA
TGCGTTTGGGTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10455:25..2787+

>mRNA_D-mesarthrocarpus_Contig10455.1.1 ID=mRNA_D-mesarthrocarpus_Contig10455.1.1|Name=mRNA_D-mesarthrocarpus_Contig10455.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=498bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10455:25..2787+ (Discosporangium mesarthrocarpum MT17_79)
CTGCCGCAGGGCAACCTGGAGACGGCGTTAAAGATCACCCAGGCGGCCAC
CGCACGGTTCCCCTGGGACCAGAGCCTCCTCCAGACACAGGGGACGGTCC
AGGGCCGTCTGGGGCGCCCTAACGAGGCTCGAGAGTGCTATCGGCGGAGC
ATAGAGATACGACCCGCTGCCCCAGCCTACGTGGCCTGGGCGCTTCTCGA
GGACTCCTTGGCCACGAGGTTGGTACACAGTGATGGATACAGTGCAGTGT
ATTGTCCAGCAAAGTACAGCACAGAGGCCGGGGGCGGAGTAGGGGGTGTC
GTAGGCCTTCACGGGGAGACGGGGGCAGCGGCAGGGGCCGAGATTGATAA
GGGGGGGGCTGGGGCTGGGCGGAAGGAGGAGGGGCATGGGGGGAGGGAGC
TGGCGGGGATCGATGGGCACGAGGAGGCCCGGAGGCTCTTTGGGCTGGGG
CTCCGGGCAGACCCAACACATGGCCCGCTCTACAATGCGTTTGGGTGA
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