mRNA_D-mesarthrocarpus_Contig10445.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10445.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig10445.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10445.3.1 vs. uniprot
Match: D7FME7_ECTSI (Myb-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME7_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 4.750e-20
Identity = 49/87 (56.32%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:  100 PGGASTAG-DRFSTADLCRGPDSWGLSIRLLPHQRQALGWARALVARGLGGFISDDPGTGQTVTAAAAVAWVASSRVFVERERVRVY 357
            PG    AG + FS+ +L R PDSWG+++ LLPHQ +AL W RAL  RGLGG + DD GTG+TVTAAA VA VA+ R  VE ER  ++
Sbjct:  932 PGSNGVAGYEEFSSRNLSRAPDSWGMAVHLLPHQAKALSWIRALAGRGLGGVLCDDRGTGKTVTAAATVAMVAACRSVVETERTDIF 1018
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BLAST of mRNA_D-mesarthrocarpus_Contig10445.3.1 vs. uniprot
Match: A0A6H5JHX4_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHX4_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.120e-19
Identity = 45/78 (57.69%), Postives = 57/78 (73.08%), Query Frame = 1 
Query:  124 DRFSTADLCRGPDSWGLSIRLLPHQRQALGWARALVARGLGGFISDDPGTGQTVTAAAAVAWVASSRVFVERERVRVY 357
            + FS+ +L R PDSWG+++ LLPHQ +AL W RAL  RGLGG + DD GTG+TVTAAA VA VA+ R  VE ER  ++
Sbjct:  504 NEFSSRNLSRAPDSWGMAVHLLPHQEKALSWIRALAGRGLGGVLCDDRGTGKTVTAAATVAMVAACRSVVETERTDIF 581
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10445.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FME7_ECTSI4.750e-2056.32Myb-like domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JHX4_9PHAE2.120e-1957.69SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10445contigD-mesarthrocarpus_Contig10445:2410..4225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog521393.JH806632_gene832
Preferred namehelZ
PFAMsHelicase_C,SNF2_N,SNF2_assoc,SWIM
Model size519
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons4
Evalue7.36e-05
EggNOG OGsCOG0553@1|root,COG4715@1|root,COG0553@2|Bacteria,COG4715@2|Bacteria,2GISC@201174|Actinobacteria,4D3XH@85005|Actinomycetales
DescriptionSNF2 family N-terminal domain protein
Cds size519
COG categoryKL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789182.8998775-CDS-D-mesarthrocarpus_Contig10445:2409..25201680789182.8998775-CDS-D-mesarthrocarpus_Contig10445:2409..2520Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10445 2410..2520 -
1680789182.9132838-CDS-D-mesarthrocarpus_Contig10445:2825..29541680789182.9132838-CDS-D-mesarthrocarpus_Contig10445:2825..2954Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10445 2826..2954 -
1680789182.9264793-CDS-D-mesarthrocarpus_Contig10445:3360..35211680789182.9264793-CDS-D-mesarthrocarpus_Contig10445:3360..3521Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10445 3361..3521 -
1680789182.9348931-CDS-D-mesarthrocarpus_Contig10445:4107..42251680789182.9348931-CDS-D-mesarthrocarpus_Contig10445:4107..4225Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10445 4108..4225 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10445.3.1prot_D-mesarthrocarpus_Contig10445.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10445 2410..4225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10445.3.1

>prot_D-mesarthrocarpus_Contig10445.3.1 ID=prot_D-mesarthrocarpus_Contig10445.3.1|Name=mRNA_D-mesarthrocarpus_Contig10445.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=173bp
QKILETATQGGVAMVVPASDNRTSEGRGVEGGAPGGASTAGDRFSTADLC
RGPDSWGLSIRLLPHQRQALGWARALVARGLGGFISDDPGTGQTVTAAAA
VAWVASSRVFVERERVRVYAEAARSEGQPETNHTAEGNAAADPPGLPAAG
SPTTVDGATAAAKGGQVNSFFP*
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mRNA from alignment at D-mesarthrocarpus_Contig10445:2410..4225-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10445.3.1 ID=mRNA_D-mesarthrocarpus_Contig10445.3.1|Name=mRNA_D-mesarthrocarpus_Contig10445.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1816bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10445:2410..4225- (Discosporangium mesarthrocarpum MT17_79)
CAGAAGATCCTCGAAACCGCCACCCAGGGGGGAGTCGCCATGGTTGTGCC
TGCCAGTGACAACAGGACCAGCGAGGGCAGGGGGGTGGAAGGGGGTGCGC
CGGGAGGCGCTTCCACTGGTGAGTTAGTTTTGTTTAGGCATCTCAGCAAC
TCGGTGTCTCAATGTCTCAAGCTTTGAGGGGGCTTTGATTTTTGTGGAGT
GAAGCGGAGTGGAGCGGAGGCAATTATTTATTGGCTGTGTGTGAGTGTGG
ATCCATCCGCAGATCTTTTGTCTTTTTTGTCTCATTTTTTTATAGAGTGT
CCTCTCCTGGCCCTTTTTGATTTTGATTCGTTTTTCCTTTTTTTCTTTTA
ACCTTCCTTTCAGAGCAAGTCCCTCTCCCCTCTTTGCCTCACAAAATGAG
GAGTGTGATCAGAGTATGATGAAACGCCCGTTTTATTTTGTCTTTCTTTA
TGTTTTTCTGGTATCCCACACTATTGTCGCAATCCTGGAAGGGATGGTCA
AGCATGTGATCCCTGCCTTCCTTCCAATTCATTCCTCCATACATACCGGA
CAGTATACTCTGGCCCCCAATCAGTTGGAGATTGAGGTGCAGATCCTTGT
GGGCACCAACAACCACCTGTCATCTACCCTCCTTCTCCCTCTCTTTTTTA
TTTTAAACACATTTTTACTTTTTTCTCGTGTTCACATGGCAAAAAAAAAT
AAAGCTGGAGACAGGTTCTCCACAGCCGACCTCTGCAGGGGACCGGATTC
CTGGGGTCTCTCCATCAGGCTGCTGCCTCACCAGCGGCAAGCTCTGGGCT
GGGCCAGGGCTCTGGTAGCGAGGGGGCTGGGGGGCTTCATCTCAGACGAT
CCCGGCACTGGCCAGGTCATGTTGAAGGGGGAGGGGGGGGGGGGGGCGCA
TGTTTGGGATAGGAGAGGGAGGGGGGGGAGGGAAAGAGAACATTTTCTTG
AGGTTTTTTTCGTATGTTGCTCATGTACCTGGAAATATGTTGTACAGTTC
TTCAGTTCTTTAGTATGTGCATACTCTGTACATACATGTGCATATCTACG
ATATGTACACACTCTGTGGCTACACATACATACATACATACCTTCACAAA
GTACATACATACATCCTTCAGAGTGTCTATTCTGGTGAGTCGAACAAAAC
CGGGAACCCTTTTGATTCGACCCCTCACCCTCCAAGTCGAAACCTTCCCC
GACAAATGCACCTCCCTTCTTGACTGAACCTCTAAAAAACAAATAAATAT
ATATCGAAACCCTACACGCAGACCGTCACAGCAGCAGCAGCAGTGGCGTG
GGTTGCCTCCTCCAGGGTTTTTGTAGAGAGGGAGAGGGTGAGGGTGTACG
CCGAAGCAGCGCGATCAGAGGGCCAGCCTGAGACCAACCACACTGCCGAG
GTGATGAGGGTGCCCATAGGAAAATGACGGGATCGGACAGGATGGGCATA
CAGCTGTGGCGAGGGGGGGGGTTTCTAGCATACCCACCTGCGCATCCTTT
GGTGCACTAGCCCTAACCCTACGCCTAAACCCAACTTCTTAACCTAAGTG
CTGTTCAATGGAAAAACCTGTACGCTGCACTGTGCGGACAAAGGGGGGCC
CCACCTCCTCAGTTCCCCTCCCCTCCCCTCCCCTCCCCTTTCCTTCCCTA
CCCTTCCCTACCCTTCCCCTGCTTTCCTCTCTGCCCTCCCTCCCCTGCCA
AGAAGGGAAATGCCGCTGCCGACCCCCCAGGTTTGCCTGCCGCAGGCTCT
CCCACCACCGTTGATGGTGCGACTGCCGCAGCAAAGGGAGGACAGGTAAA
CAGCTTTTTCCCGTAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10445:2410..4225-

>mRNA_D-mesarthrocarpus_Contig10445.3.1 ID=mRNA_D-mesarthrocarpus_Contig10445.3.1|Name=mRNA_D-mesarthrocarpus_Contig10445.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=519bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10445:2410..4225- (Discosporangium mesarthrocarpum MT17_79)
CAGAAGATCCTCGAAACCGCCACCCAGGGGGGAGTCGCCATGGTTGTGCC
TGCCAGTGACAACAGGACCAGCGAGGGCAGGGGGGTGGAAGGGGGTGCGC
CGGGAGGCGCTTCCACTGCTGGAGACAGGTTCTCCACAGCCGACCTCTGC
AGGGGACCGGATTCCTGGGGTCTCTCCATCAGGCTGCTGCCTCACCAGCG
GCAAGCTCTGGGCTGGGCCAGGGCTCTGGTAGCGAGGGGGCTGGGGGGCT
TCATCTCAGACGATCCCGGCACTGGCCAGACCGTCACAGCAGCAGCAGCA
GTGGCGTGGGTTGCCTCCTCCAGGGTTTTTGTAGAGAGGGAGAGGGTGAG
GGTGTACGCCGAAGCAGCGCGATCAGAGGGCCAGCCTGAGACCAACCACA
CTGCCGAGGGAAATGCCGCTGCCGACCCCCCAGGTTTGCCTGCCGCAGGC
TCTCCCACCACCGTTGATGGTGCGACTGCCGCAGCAAAGGGAGGACAGGT
AAACAGCTTTTTCCCGTAG
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