mRNA_D-mesarthrocarpus_Contig10445.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10445.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10445.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10445.2.1 vs. uniprot
Match: A0A6H5JHX4_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHX4_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 6.630e-14
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:   19 PRPGLLAPPPQLVAVPACGLARWHMELALACPRLQVRVWEDWLAEE 156
            PRPG LAPPPQLV VP+  +ARWHMELA ACPRL ++VWE+W ++E
Sbjct:  643 PRPGSLAPPPQLVVVPSWAMARWHMELAQACPRLVIKVWEEWRSQE 688
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BLAST of mRNA_D-mesarthrocarpus_Contig10445.2.1 vs. uniprot
Match: D7FME7_ECTSI (Myb-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME7_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 6.700e-14
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:   19 PRPGLLAPPPQLVAVPACGLARWHMELALACPRLQVRVWEDWLAEE 156
            PRPG LAPPPQLV VP+  +ARWHMELA ACPRL ++VWE+W ++E
Sbjct: 1080 PRPGSLAPPPQLVVVPSWAMARWHMELAQACPRLVIKVWEEWRSQE 1125
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10445.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHX4_9PHAE6.630e-1469.57SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
D7FME7_ECTSI6.700e-1469.57Myb-like domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10445contigD-mesarthrocarpus_Contig10445:1569..1799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size233
Hectar predicted targeting categoryother localisation
Exons1
Cds size231
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789182.8639803-CDS-D-mesarthrocarpus_Contig10445:1568..17991680789182.8639803-CDS-D-mesarthrocarpus_Contig10445:1568..1799Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10445 1569..1799 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10445.2.1prot_D-mesarthrocarpus_Contig10445.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10445 1569..1799 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10445.2.1

>prot_D-mesarthrocarpus_Contig10445.2.1 ID=prot_D-mesarthrocarpus_Contig10445.2.1|Name=mRNA_D-mesarthrocarpus_Contig10445.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=77bp
SPPPPCPRPGLLAPPPQLVAVPACGLARWHMELALACPRLQVRVWEDWLA
EEQRLRNDPGVSRVLGSCPAGLGTRLG
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mRNA from alignment at D-mesarthrocarpus_Contig10445:1569..1799-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10445.2.1 ID=mRNA_D-mesarthrocarpus_Contig10445.2.1|Name=mRNA_D-mesarthrocarpus_Contig10445.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=231bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10445:1569..1799- (Discosporangium mesarthrocarpum MT17_79)
TCACCTCCCCCACCCTGCCCAAGGCCCGGGCTGCTGGCACCGCCCCCGCA
GCTAGTGGCAGTGCCAGCATGTGGCTTGGCAAGGTGGCACATGGAGCTGG
CGCTGGCTTGCCCCCGGCTCCAGGTGAGGGTATGGGAGGACTGGCTGGCG
GAGGAGCAGCGCCTCCGGAATGACCCAGGGGTCTCGAGGGTGCTGGGCAG
CTGTCCAGCAGGGTTGGGGACAAGGCTGGGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10445:1569..1799-

>mRNA_D-mesarthrocarpus_Contig10445.2.1 ID=mRNA_D-mesarthrocarpus_Contig10445.2.1|Name=mRNA_D-mesarthrocarpus_Contig10445.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=231bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10445:1569..1799- (Discosporangium mesarthrocarpum MT17_79)
TCACCTCCCCCACCCTGCCCAAGGCCCGGGCTGCTGGCACCGCCCCCGCA
GCTAGTGGCAGTGCCAGCATGTGGCTTGGCAAGGTGGCACATGGAGCTGG
CGCTGGCTTGCCCCCGGCTCCAGGTGAGGGTATGGGAGGACTGGCTGGCG
GAGGAGCAGCGCCTCCGGAATGACCCAGGGGTCTCGAGGGTGCTGGGCAG
CTGTCCAGCAGGGTTGGGGACAAGGCTGGGG
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