mRNA_D-mesarthrocarpus_Contig10303.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10303.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10303.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10303.2.1 vs. uniprot
Match: D8LTD5_ECTSI (Polyadenylate-binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTD5_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 7.070e-37
Identity = 75/85 (88.24%), Postives = 80/85 (94.12%), Query Frame = 1 
Query:   25 QAAPSTNESLSAAALAAAAPEKQKNMIGERLYPLIHEGQPQLAGKITGMLLEMDNGELLHLLESPEALQAKISEALQVLSEHSAE 279
            QAAP+TNESLSAAALAAA PEKQKNMIGERLYPLI+EGQP LAGKITGMLLEMDNGELLHLLESP++L AKI+EALQVLSEH  E
Sbjct:  602 QAAPATNESLSAAALAAAPPEKQKNMIGERLYPLIYEGQPALAGKITGMLLEMDNGELLHLLESPDSLAAKINEALQVLSEHQQE 686
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10303.2.1 vs. uniprot
Match: A0A7R9W8W3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W8W3_9STRA)

HSP 1 Score: 120 bits (302), Expect = 2.360e-33
Identity = 64/83 (77.11%), Postives = 70/83 (84.34%), Query Frame = 1 
Query:   43 NESLSAAALAAAAPEKQKNMIGERLYPLIHEGQPQLAGKITGMLLEMDNGELLHLLESPEALQAKISEALQVLSEHSAETAAA 291
            NE+L+A+ALA+A PE QKNMIGERLYPLIH  QP LAGKITGMLLEMDN ELLHLLESP+AL AKI EALQVL  H+A  A A
Sbjct:   36 NEALTASALASATPEMQKNMIGERLYPLIHHSQPDLAGKITGMLLEMDNSELLHLLESPDALNAKIQEALQVLEAHNAAQATA 118
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10303.2.1 vs. uniprot
Match: K0RXK8_THAOC (PABC domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RXK8_THAOC)

HSP 1 Score: 119 bits (299), Expect = 2.410e-32
Identity = 64/80 (80.00%), Postives = 68/80 (85.00%), Query Frame = 1 
Query:   37 STNESLSAAALAAAAPEKQKNMIGERLYPLIHEGQPQLAGKITGMLLEMDNGELLHLLESPEALQAKISEALQVLSEHSA 276
            S NE L+ AALA+A PE QKNMIGERLYPLIH+ QP LAGKITGMLLEMDN ELLHLLESPEAL AKI EALQVL  H+A
Sbjct:   25 SANEQLTPAALASATPEIQKNMIGERLYPLIHQTQPDLAGKITGMLLEMDNSELLHLLESPEALGAKIQEALQVLDAHNA 104
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10303.2.1 vs. uniprot
Match: A0A7R9U8R0_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8R0_9STRA)

HSP 1 Score: 115 bits (287), Expect = 6.370e-31
Identity = 62/84 (73.81%), Postives = 70/84 (83.33%), Query Frame = 1 
Query:   19 PLQAAPSTNESLSAAALAAAAPEKQKNMIGERLYPLIHEGQPQLAGKITGMLLEMDNGELLHLLESPEALQAKISEALQVLSEH 270
            P   AP    +L+ +ALAAA+P +QKNMIGERLYPLI   QPQLAGKITGMLLEMDN ELLHLLESP+ALQAKI+EALQVL +H
Sbjct:   41 PQGVAPPVEAALTPSALAAASPTQQKNMIGERLYPLIMGTQPQLAGKITGMLLEMDNSELLHLLESPDALQAKINEALQVLEKH 124
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10303.2.1 vs. uniprot
Match: G4ZHX5_PHYSP (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=G4ZHX5_PHYSP)

HSP 1 Score: 120 bits (300), Expect = 6.610e-31
Identity = 63/75 (84.00%), Postives = 68/75 (90.67%), Query Frame = 1 
Query:   46 ESLSAAALAAAAPEKQKNMIGERLYPLIHEGQPQLAGKITGMLLEMDNGELLHLLESPEALQAKISEALQVLSEH 270
            E L++AALAAA+PE QKNMIGERLYPLIH  QP+LAGKITGMLLEMDNGELLHLLESPEAL+AKISEAL VL  H
Sbjct:  241 EPLTSAALAAASPEIQKNMIGERLYPLIHRQQPELAGKITGMLLEMDNGELLHLLESPEALEAKISEALAVLEAH 315
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10303.2.1 vs. uniprot
Match: A0A6T8JM21_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8JM21_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.560e-30
Identity = 64/78 (82.05%), Postives = 70/78 (89.74%), Query Frame = 1 
Query:   43 NESLSAAALAAAAPEKQKNMIGERLYPLIHEGQPQLAGKITGMLLEMDNGELLHLLESPEALQAKISEALQVLSEHSA 276
            NESL+A+ALA+A PE QKNMIGERLYPLIH  QP+LAGKITGMLLEMDN ELLHLLESP+AL AKISEALQVL  H+A
Sbjct:  660 NESLTASALASATPEMQKNMIGERLYPLIHASQPELAGKITGMLLEMDNSELLHLLESPDALNAKISEALQVLEAHNA 737
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10303.2.1 vs. uniprot
Match: A0A835YVH9_9STRA (Polyadenylate-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH9_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.940e-30
Identity = 63/75 (84.00%), Postives = 69/75 (92.00%), Query Frame = 1 
Query:   46 ESLSAAALAAAAPEKQKNMIGERLYPLIHEGQPQLAGKITGMLLEMDNGELLHLLESPEALQAKISEALQVLSEH 270
            ESL+A ALAAA+PE QKNMIGERLYPLIHE QP+LAGKITGMLLEMDNGELLHLLESP++L+AKI EALQVL  H
Sbjct:  593 ESLTAQALAAASPEMQKNMIGERLYPLIHESQPELAGKITGMLLEMDNGELLHLLESPDSLKAKIQEALQVLEAH 667
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10303.2.1 vs. uniprot
Match: A0A7S2RUB9_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RUB9_9STRA)

HSP 1 Score: 118 bits (296), Expect = 2.260e-30
Identity = 60/79 (75.95%), Postives = 70/79 (88.61%), Query Frame = 1 
Query:   34 PSTNESLSAAALAAAAPEKQKNMIGERLYPLIHEGQPQLAGKITGMLLEMDNGELLHLLESPEALQAKISEALQVLSEH 270
            P+ +E L+AAALA+A+P+ QKNMIGERLYPLIH  +P+LAGKITGMLLEMDN ELLHLLESP+AL+AKI EALQVL  H
Sbjct:  227 PAPHEPLTAAALASASPDVQKNMIGERLYPLIHHSEPELAGKITGMLLEMDNSELLHLLESPDALKAKIGEALQVLENH 305
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10303.2.1 vs. uniprot
Match: A0A6U3DAI6_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U3DAI6_9STRA)

HSP 1 Score: 122 bits (306), Expect = 2.790e-30
Identity = 69/95 (72.63%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:    1 PPLVRLPLQAAPST---NESLSAAALAAAAPEKQKNMIGERLYPLIHEGQPQLAGKITGMLLEMDNGELLHLLESPEALQAKISEALQVLSEHSA 276
            PP    P QAAP+      +L+A+ALA+A PE QKNMIGERLYPLIH+ QP LAGKITGMLLEMDN ELLHLLESPEAL AKISEALQVL  H A
Sbjct:  601 PPQQSAPPQAAPAPMPHEGALTASALASATPEMQKNMIGERLYPLIHQSQPDLAGKITGMLLEMDNSELLHLLESPEALNAKISEALQVLEAHQA 695
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10303.2.1 vs. uniprot
Match: A0A7S1Y0F8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y0F8_9STRA)

HSP 1 Score: 112 bits (280), Expect = 4.640e-30
Identity = 58/69 (84.06%), Postives = 63/69 (91.30%), Query Frame = 1 
Query:   64 ALAAAAPEKQKNMIGERLYPLIHEGQPQLAGKITGMLLEMDNGELLHLLESPEALQAKISEALQVLSEH 270
            ALAAA+P  QKNMIGERLYPLI + QPQLAGKITGMLLEMDN ELLHLLESP+ALQAKI+EALQVL +H
Sbjct:   41 ALAAASPAAQKNMIGERLYPLIMQSQPQLAGKITGMLLEMDNSELLHLLESPDALQAKIAEALQVLEKH 109
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10303.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTD5_ECTSI7.070e-3788.24Polyadenylate-binding protein n=2 Tax=Ectocarpus T... [more]
A0A7R9W8W3_9STRA2.360e-3377.11Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
K0RXK8_THAOC2.410e-3280.00PABC domain-containing protein n=1 Tax=Thalassiosi... [more]
A0A7R9U8R0_9STRA6.370e-3173.81Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
G4ZHX5_PHYSP6.610e-3184.00Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A6T8JM21_9STRA1.560e-3082.05Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A835YVH9_9STRA1.940e-3084.00Polyadenylate-binding protein n=1 Tax=Tribonema mi... [more]
A0A7S2RUB9_9STRA2.260e-3075.95Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A6U3DAI6_9STRA2.790e-3072.63Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S1Y0F8_9STRA4.640e-3084.06Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10303contigD-mesarthrocarpus_Contig10303:2153..2760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LTD5
Preferred namePAB1
PFAMsPABP,RRM_1
Model size303
Max annot lvl2759|Eukaryota
KEGG koko:K13126
KEGG Pathwayko03013,ko03015,ko03018,map03013,map03015,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003727,GO:0003729,GO:0004857,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005737,GO:0005840,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006446,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008143,GO:0008150,GO:0008152,GO:0008428,GO:0009889,GO:0009894,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010608,GO:0015031,GO:0015833,GO:0015931,GO:0019219,GO:0019222,GO:0030234,GO:0031323,GO:0031326,GO:0031329,GO:0031503,GO:0032268,GO:0032991,GO:0033036,GO:0034248,GO:0034613,GO:0035770,GO:0036464,GO:0042886,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044092,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051252,GO:0051641,GO:0051649,GO:0060211,GO:0060255,GO:0061013,GO:0065007,GO:0065009,GO:0070717,GO:0070727,GO:0071014,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0097159,GO:0098772,GO:1900151,GO:1901363,GO:1903311,GO:1990841,GO:1990904,GO:2000112
Exons2
Evalue1.16e-37
EggNOG OGsKOG0123@1|root,KOG0123@2759|Eukaryota
DescriptionRNA binding
Cds size303
COG categoryJ
BRITEko00000,ko00001,ko03019,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789171.1364584-CDS-D-mesarthrocarpus_Contig10303:2152..23181680789171.1364584-CDS-D-mesarthrocarpus_Contig10303:2152..2318Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10303 2153..2318 +
1680789171.148756-CDS-D-mesarthrocarpus_Contig10303:2623..27601680789171.148756-CDS-D-mesarthrocarpus_Contig10303:2623..2760Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10303 2624..2760 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10303.2.1prot_D-mesarthrocarpus_Contig10303.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10303 2153..2760 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10303.2.1

>prot_D-mesarthrocarpus_Contig10303.2.1 ID=prot_D-mesarthrocarpus_Contig10303.2.1|Name=mRNA_D-mesarthrocarpus_Contig10303.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=101bp
PPLVRLPLQAAPSTNESLSAAALAAAAPEKQKNMIGERLYPLIHEGQPQL
AGKITGMLLEMDNGELLHLLESPEALQAKISEALQVLSEHSAETAAAVHS
*
back to top

mRNA from alignment at D-mesarthrocarpus_Contig10303:2153..2760+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10303.2.1 ID=mRNA_D-mesarthrocarpus_Contig10303.2.1|Name=mRNA_D-mesarthrocarpus_Contig10303.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=608bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10303:2153..2760+ (Discosporangium mesarthrocarpum MT17_79)
CCTCCCCTGGTTCGTTTACCTTTGCAGGCTGCCCCGTCCACTAATGAGTC
CCTTTCTGCGGCTGCGCTGGCTGCTGCGGCCCCTGAGAAGCAGAAGAACA
TGATCGGTGAAAGGCTGTACCCCCTCATACACGAGGGACAGCCACAGCTG
GCAGGCAAGATCACAGGTGAGGTTCGGAGCTCCACTTGAGGGTGGTGAAT
CATCCAGCGGTCACTGCCTCGACGAGGGGACAGGAGGGGCTGCAGGGTGC
GGGAGAGAAAAGGAGAAAAGCAGATAACTCTTCCATTTGATAGCGCCCCT
TTTTTTTGCTGTTGTGCTGGAAACAATTTCTCGTTGCTCAGCAATTCTCT
CTCAAGGCTTAAAATAGTTTTGCAGTAAATAGAAACATCCACCAAGCCCA
ACCTTAACGCCAACCCCCCCCTTGTCCCTGTCCCCCGTCCCCCCCCCCTT
TTTTTGTTGCTCTCAACCCAGGTATGCTTCTGGAGATGGATAACGGGGAG
CTGCTCCACCTTCTGGAATCTCCCGAGGCCCTCCAGGCAAAGATTTCTGA
AGCCCTGCAAGTTCTCAGCGAGCACAGTGCGGAGACGGCTGCTGCTGTTC
ACTCCTAG
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10303:2153..2760+

>mRNA_D-mesarthrocarpus_Contig10303.2.1 ID=mRNA_D-mesarthrocarpus_Contig10303.2.1|Name=mRNA_D-mesarthrocarpus_Contig10303.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=303bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10303:2153..2760+ (Discosporangium mesarthrocarpum MT17_79)
CCTCCCCTGGTTCGTTTACCTTTGCAGGCTGCCCCGTCCACTAATGAGTC
CCTTTCTGCGGCTGCGCTGGCTGCTGCGGCCCCTGAGAAGCAGAAGAACA
TGATCGGTGAAAGGCTGTACCCCCTCATACACGAGGGACAGCCACAGCTG
GCAGGCAAGATCACAGGTATGCTTCTGGAGATGGATAACGGGGAGCTGCT
CCACCTTCTGGAATCTCCCGAGGCCCTCCAGGCAAAGATTTCTGAAGCCC
TGCAAGTTCTCAGCGAGCACAGTGCGGAGACGGCTGCTGCTGTTCACTCC
TAG
back to top