mRNA_D-mesarthrocarpus_Contig1027.13.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_D-mesarthrocarpus_Contig1027.13.1
Unique Name	mRNA_D-mesarthrocarpus_Contig1027.13.1
Type	mRNA
Organism	Discosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_D-mesarthrocarpus_Contig1027.13.1 vs. uniprot

BLAST of mRNA_D-mesarthrocarpus_Contig1027.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D-mesarthrocarpus_Contig1027	contig	D-mesarthrocarpus_Contig1027:20332..20454 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	4787.PITG_00592T0
PFAMs	Ost4
Model size	123
Max annot lvl	4776\|Peronosporales
Hectar predicted targeting category	signal anchor
Exons	1
Evalue	0.000563
EggNOG OGs	2CZT2@1\|root,2SBJQ@2759\|Eukaryota,3QGR4@4776\|Peronosporales
Ec32 ortholog description	Oligosaccaryltransferase
Ec32 ortholog	Ec-28_000550.1
Description	Oligosaccaryltransferase
Cds size	123
COG category	S

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789168.5072763-CDS-D-mesarthrocarpus_Contig1027:20331..20454	1680789168.5072763-CDS-D-mesarthrocarpus_Contig1027:20331..20454	Discosporangium mesarthrocarpum MT17_79	CDS	D-mesarthrocarpus_Contig1027 20332..20454 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_D-mesarthrocarpus_Contig1027.13.1	prot_D-mesarthrocarpus_Contig1027.13.1	Discosporangium mesarthrocarpum MT17_79	polypeptide	D-mesarthrocarpus_Contig1027 20332..20454 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at D-mesarthrocarpus_Contig1027:20332..20454-
coding sequence from alignment at D-mesarthrocarpus_Contig1027:20332..20454-

protein sequence of mRNA_D-mesarthrocarpus_Contig1027.13.1

>prot_D-mesarthrocarpus_Contig1027.13.1 ID=prot_D-mesarthrocarpus_Contig1027.13.1|Name=mRNA_D-mesarthrocarpus_Contig1027.13.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=41bp
MADLDAQLSVVVNCLGIVVFSSIVVYHIVTANPKDTIARQ*

mRNA from alignment at D-mesarthrocarpus_Contig1027:20332..20454-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_D-mesarthrocarpus_Contig1027.13.1 ID=mRNA_D-mesarthrocarpus_Contig1027.13.1|Name=mRNA_D-mesarthrocarpus_Contig1027.13.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=123bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1027:20332..20454- (Discosporangium mesarthrocarpum MT17_79)
ATGGCTGATCTCGACGCACAGTTATCTGTTGTTGTGAACTGCCTGGGCAT
CGTAGTGTTCTCATCTATCGTTGTTTATCATATCGTCACAGCAAATCCCA
AGGATACGATTGCAAGACAATAA

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1027:20332..20454-

>mRNA_D-mesarthrocarpus_Contig1027.13.1 ID=mRNA_D-mesarthrocarpus_Contig1027.13.1|Name=mRNA_D-mesarthrocarpus_Contig1027.13.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=123bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1027:20332..20454- (Discosporangium mesarthrocarpum MT17_79)
ATGGCTGATCTCGACGCACAGTTATCTGTTGTTGTGAACTGCCTGGGCAT
CGTAGTGTTCTCATCTATCGTTGTTTATCATATCGTCACAGCAAATCCCA
AGGATACGATTGCAAGACAATAA