mRNA_D-mesarthrocarpus_Contig10152.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10152.1.1 vs. uniprot
Match: D7FQ90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ90_ECTSI) HSP 1 Score: 120 bits (301), Expect = 3.840e-29 Identity = 53/77 (68.83%), Postives = 68/77 (88.31%), Query Frame = 1 Query: 1 PSLQLQPDVVSYTSAIHACSGPNGNWEKAYYQLLDKMWQ-VTGARPNKVSYDLVMQACGHGGEWELGVALLEDMREV 228
P+ +++PDV+S+TSAIHAC+GP GNWEKAY QLLD MWQ GA+P+K +YDLV+QACGHGGEWELGV L++DMR++
Sbjct: 2 PAAKVKPDVISFTSAIHACAGPTGNWEKAY-QLLDAMWQDPEGAKPSKHTYDLVIQACGHGGEWELGVTLIDDMRDL 77
BLAST of mRNA_D-mesarthrocarpus_Contig10152.1.1 vs. uniprot
Match: A0A6H5L2A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A2_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 1.320e-18 Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 1 Query: 1 PSLQLQPDVVSYTSAIHACSGPNGNWEKAYYQLLDKMWQ-VTGARPNKVSYDLVMQACGHGGEWELGVALLEDMREV 228
P+ +++ +GP GNWEKAY QLLD MWQ GA+P+K +YDLV+QACGHGGEWELGV L++DMR++
Sbjct: 419 PAAKVKXXXXXXXXXXXXXAGPTGNWEKAY-QLLDAMWQDPEGAKPSKHTYDLVIQACGHGGEWELGVTLIDDMRDL 494
BLAST of mRNA_D-mesarthrocarpus_Contig10152.1.1 vs. uniprot
Match: A0A7S0LID2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LID2_9EUKA) HSP 1 Score: 52.8 bits (125), Expect = 8.090e-6 Identity = 27/63 (42.86%), Postives = 35/63 (55.56%), Query Frame = 1 Query: 4 SLQLQPDVVSYTSAIHACSGPNGNWEKAYYQLLDKMWQVTGARPNKVSYDLVMQACGHGGEWE 192
S ++ PDVVSY +AI ACS + +W +LL +M G RPN +Y AC GG WE
Sbjct: 45 SPRMPPDVVSYATAISACSRDSAHWRTGV-ELLRQM-DAVGVRPNVFAYASAASACATGGAWE 105 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10152.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10152.1.1 >prot_D-mesarthrocarpus_Contig10152.1.1 ID=prot_D-mesarthrocarpus_Contig10152.1.1|Name=mRNA_D-mesarthrocarpus_Contig10152.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=127bp PSLQLQPDVVSYTSAIHACSGPNGNWEKAYYQLLDKMWQVTGARPNKVSYback to top mRNA from alignment at D-mesarthrocarpus_Contig10152:2644..3571+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig10152.1.1 ID=mRNA_D-mesarthrocarpus_Contig10152.1.1|Name=mRNA_D-mesarthrocarpus_Contig10152.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=928bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10152:2644..3571+ (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10152:2644..3571+ >mRNA_D-mesarthrocarpus_Contig10152.1.1 ID=mRNA_D-mesarthrocarpus_Contig10152.1.1|Name=mRNA_D-mesarthrocarpus_Contig10152.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=381bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10152:2644..3571+ (Discosporangium mesarthrocarpum MT17_79)back to top |