Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10103.1.1 vs. uniprot
Match:
UPI001CA98769 (Hsp70 family protein n=1 Tax=Dactylosporangium vinaceum TaxID=53362 RepID=UPI001CA98769)
HSP 1 Score: 50.1 bits (118), Expect = 8.050e-5
Identity = 20/37 (54.05%), Postives = 26/37 (70.27%), Query Frame = 1
Query: 4 SPDSRLASSCGDDKTVRLWDVDTQSALHTFFDHDSPV 114
SPD RL ++ GDD+ VR+WD+D+ HT DHD PV
Sbjct: 349 SPDGRLVAAGGDDRKVRIWDIDSALVRHTLSDHDGPV 385
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10103.1.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 8.05e-5 / Id = 54.05 Sequence UPI001CA98769
Match Name E-value Identity Description
UPI001CA98769 8.050e-5 54.05 Hsp70 family protein n=1 Tax=Dactylosporangium vin... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 0 Start 0 Seed ortholog 3983.cassava4.1_000638m PFAMs WD40 Model size 309 Max annot lvl 35493|Streptophyta Hectar predicted targeting category other localisation GOs GO:0000003,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0007275,GO:0008150,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009933,GO:0010014,GO:0010016,GO:0010072,GO:0010154,GO:0022414,GO:0032501,GO:0032502,GO:0044424,GO:0044444,GO:0044464,GO:0048316,GO:0048367,GO:0048507,GO:0048508,GO:0048532,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0090421 Exons 2 Evalue 8.86e-05 EggNOG OGs KOG0266@1|root,KOG0266@2759|Eukaryota,37YAD@33090|Viridiplantae,3GNWM@35493|Streptophyta,4JS26@91835|fabids Description Topless-related protein 1-like Cds size 309 COG category L
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789155.8370621-CDS-D-mesarthrocarpus_Contig10103:354..534 1680789155.8370621-CDS-D-mesarthrocarpus_Contig10103:354..534 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10103 355..534 + 1680789155.8488839-CDS-D-mesarthrocarpus_Contig10103:1854..1983 1680789155.8488839-CDS-D-mesarthrocarpus_Contig10103:1854..1983 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10103 1855..1983 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10103.1.1
>prot_D-mesarthrocarpus_Contig10103.1.1 ID=prot_D-mesarthrocarpus_Contig10103.1.1|Name=mRNA_D-mesarthrocarpus_Contig10103.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=103bp
YSPDSRLASSCGDDKTVRLWDVDTQSALHTFFDHDSPVGEVRFHPDGTCV back to top mRNA from alignment at D-mesarthrocarpus_Contig10103:355..1983+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10103.1.1 ID=mRNA_D-mesarthrocarpus_Contig10103.1.1|Name=mRNA_D-mesarthrocarpus_Contig10103.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1629bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10103:355..1983+ (Discosporangium mesarthrocarpum MT17_79)TACAGCCCGGACTCGCGGTTGGCATCGTCGTGCGGGGATGACAAGACTGT
TCGGCTGTGGGATGTGGACACCCAGTCTGCTCTGCACACCTTCTTTGACC
ATGATAGTCCAGTCGGGGAGGTCCGGTTCCACCCTGATGGGACTTGTGTC
GCCTCGTGCTCCGCAGACAAGACCATCAAG GTACGCTTCGTCTTCCTTTT
TTTTTTTAATCTGACTATTGCACGGTAGTATGCGGCGGCAATGTAGTCTG
TACGTGGTAATTTTGTTGATGCTGATTTTTTATAACAGGGGTGGTGGTGG
TGGCAAGGGTGGGGGGGGCAAGGGCAGTGGTGGCGGTGGTGGTAGGCTAT
TGGGTGGGAATGGGGGGTTGGGATGGAGGGTTGAGGGTGGGGGAGAGTTG
TGGGTTGGTCACAAACTCTTTTTTGAGTATCCAGCCCCTCATCCTTTGCT
TCATGCCACCCTACCATAGCTGAAAGGTCTGTGGCTGCTGGCTACTGCTG
GTGCCGGCTGAAGGTGACTTCTGACGTTAGTCTTGCAACGCTAGTTAGTC
TTGTAATGCTAGTTAAGCTTTCAATGCTAGTTAAGCTTTCAATGCTATTT
AAACCTTCAACGTTAATTAAACTTGCAATGCTAATTAAGCTTTCAATGCT
AGTTAAGCTTTCAATGCTAGTTAAGCTTTCAATACTAGTTAAATCTTCAA
CATCAATTAAGCTTTCAATGCTAGTTAAACTTTCAATGCTAGTTAAACCT
TCAACGTCAATTAAACTTGCACTGCTAATTAAGCTTTCAATGCTAGTTAA
ACTTTCAATTCTAGTTTAGCTTTCAACTCTGGTTAAGCTTTCAATGCTAA
TTAAACTTTCAATTCTAGTTAAGCTTTCAATGCTAGTTAAGCTTTAAATG
CTAATTAAGCTTTCAATGCAATTTTTGTGCCACCATCTAGTGCAAGGTAG
CAGCAGCAGCGCATTGTCCTACCTGAATGGTTGTCCCTCATCTTGTAGCA
TTTGGTAGCGGCTCTGAGCCCACAACTCTCGGCTCTGGTGACCCAGAGCA
CAAAACAAGGCATGCCCAGGCCCGTGCAGGCGAGTCGCCCCCCCTGGCCC
TCGTAACCCTGTATCGTGCTTGAGCTCTGTGTCTCACACAGCCCTGGTCC
TTGCCGAGGGTCAAAGAAGAACCTCAGGCTCCCTGCAGAGATAGCCAGAC
CTAACCCTGTCCATACCCTTAACCCTAACCTCAGAACAACTAAGGGGCTA
TGAACACCACCCTTGCGACGTGGACCAGGGCTTCTAATATCCTTATCCTT
GGCCCCATGCACATACCCCATGCTGGAAAAAGGGTGCCTGTCCTATGCCT
GATGGGTGGTTACACTTTTTTTTTACCCCTCTGCCTTGACCTTCACGTTT
AGCTCTACTCTGCCCTACTTGGTATGTTTTTTTTTGTTTTCTCCCCCCCT
CTTGCTCCTCGGCTGGAAAAAAAAAATGGAACAAACGGAATGGAACACAG
GTCTGGGACACCCGATCACACAAGCTGCTGCAGCACTACCCAGCCCATGA
TGGGGAGGTGACTTCCATAAGTTTCCATCCCTCAGGAAACTTCCTGCTCT
CCTCTTCTGCGGACACCTCCCTCAAGGTT back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10103:355..1983+
>mRNA_D-mesarthrocarpus_Contig10103.1.1 ID=mRNA_D-mesarthrocarpus_Contig10103.1.1|Name=mRNA_D-mesarthrocarpus_Contig10103.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=309bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10103:355..1983+ (Discosporangium mesarthrocarpum MT17_79) back to top