Homology
BLAST of mRNA_D-mesarthrocarpus_Contig1001.2.1 vs. uniprot
Match:
D7FUM4_ECTSI (HTH_OrfB_IS605 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUM4_ECTSI)
HSP 1 Score: 189 bits (481), Expect = 1.970e-49
Identity = 98/172 (56.98%), Postives = 119/172 (69.19%), Query Frame = 3
Query: 456 GHRTIELLPTDEQRQTLQKWFGVVRWTHNRAVDALRRDPEASKSSLWAAVAAAESDHSWVSAVPRAVRDDTVGELWAT-----------AAACGRV----------NEDALKYRTRKDRLEKVIIRASGFLGGVPYPEYFGRTPLAASELLPDRLPGDAILVRNCERFFLCV 908
G++T+ELLPT +QRQTLQKWFGVVRW HNRAVDALR D S +SL AAVA +ES+H W +AVP A+RD TV +L AAA G ALKYRTRKDRLE++++RA GF G+PYP+YFG PLA+S +PDRLP DAILVR+ ERF+LC+
Sbjct: 226 GYQTLELLPTAQQRQTLQKWFGVVRWIHNRAVDALRVDSSVSATSLRAAVAESESEHEWAAAVPLAIRDATVAQLVGALHLAQRSAEVAAAATGEAVMAEPLGTAAQNKALKYRTRKDRLEQIVLRADGFQYGIPYPDYFGYAPLASSVPIPDRLPSDAILVRSTERFYLCI 397
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1001.2.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 1.97e-49 / Id = 56.98 Sequence D7FUM4_ECTSI
Match Name E-value Identity Description
D7FUM4_ECTSI 1.970e-49 56.98 HTH_OrfB_IS605 domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Seed ortholog 1173022.Cri9333_2873 PFAMs HTH_OrfB_IS605,OrfB_IS605,OrfB_Zn_ribbon Model size 2529 Max annot lvl 1117|Cyanobacteria KEGG ko ko:K07496 Hectar predicted targeting category other localisation Exons 3 Evalue 3.38e-05 EggNOG OGs COG0675@1|root,COG0675@2|Bacteria,1FZWK@1117|Cyanobacteria,1H7MR@1150|Oscillatoriales Ec32 ortholog description Transposase, putative, helix-turn-helix domain Ec32 ortholog Ec-26_002150.1 Description Putative transposase DNA-binding domain Cds size 750 COG category L BRITE ko00000
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789147.0909033-UTR-D-mesarthrocarpus_Contig1001:13088..14673 1680789147.0909033-UTR-D-mesarthrocarpus_Contig1001:13088..14673 Discosporangium mesarthrocarpum MT17_79 UTR D-mesarthrocarpus_Contig1001 13089..14673 - 1680789147.1426134-UTR-D-mesarthrocarpus_Contig1001:16141..16335 1680789147.1426134-UTR-D-mesarthrocarpus_Contig1001:16141..16335 Discosporangium mesarthrocarpum MT17_79 UTR D-mesarthrocarpus_Contig1001 16142..16335 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789147.1087985-CDS-D-mesarthrocarpus_Contig1001:14673..14839 1680789147.1087985-CDS-D-mesarthrocarpus_Contig1001:14673..14839 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig1001 14674..14839 - 1680789147.121199-CDS-D-mesarthrocarpus_Contig1001:15434..15700 1680789147.121199-CDS-D-mesarthrocarpus_Contig1001:15434..15700 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig1001 15435..15700 - 1680789147.1328833-CDS-D-mesarthrocarpus_Contig1001:15823..16141 1680789147.1328833-CDS-D-mesarthrocarpus_Contig1001:15823..16141 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig1001 15824..16141 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig1001.2.1
>prot_D-mesarthrocarpus_Contig1001.2.1 ID=prot_D-mesarthrocarpus_Contig1001.2.1|Name=mRNA_D-mesarthrocarpus_Contig1001.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=250bp
MSHSGLMDFWSEPWTFETWSLWSSQGAASAGLSILNWKKGESSPWSSSTW back to top mRNA from alignment at D-mesarthrocarpus_Contig1001:13089..16335-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1001.2.1 ID=mRNA_D-mesarthrocarpus_Contig1001.2.1|Name=mRNA_D-mesarthrocarpus_Contig1001.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=3247bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1001:13089..16335- (Discosporangium mesarthrocarpum MT17_79)ACGCTGTGCATATGTGCAGCCGATTTTTTGAATTGTCAGCAACTAAACGA
TAGCGGAACGCTACGGTCGAGACCCGAGAGGCTAACGAGTAACCGCAGGG
TAAGCCGCAGGGGTCAAGACTGTGAACCTCCGCACCTTCAGTGCTGGCTA
GGTCCCTATTCGTGACGTTAAGGTACTGGTCATCAAAGCACGAT ATGTCT
CACAGCGGGCTGATGGATTTTTGGAGCGAGCCGTGGACCTTCGAAACGTG
GAGCCTATGGTCTAGTCAAGGCGCGGCCTCTGCTGGCCTGAGCATTTTGA
ATTGGAAAAAAGGGGAGTCTTCACCCTGGTCCAGTAGCACCTGGGCCCCG
CCACAAGGCGCAGCCCCGTTAAGGGAAACTCTCCGGGCGAGCAACGGTGG
TCGACAAGGCGCTCGGCACCCGTTCGGGCGGGAATGCCAAATCGCACCAA
GCACTGGACACCGCACAATCGAGCTGCTCCCTACGGACGAACAGCGCCAG
ACCCTTCAGAAG GTGGGCATACATGCCTGCTATTCGTGTCCTCTCGCGCG
CTTGTACTTCCAACACAATATCCACATTCTTACCACCTCACACCCAACAT
ACCAACGTCCATGGCCGCCACTTCCCCGTACACAGTGGTTTGGTGTGGTC
CGTTGGACCCATAACCGAGCCGTTGACGCTCTCCGCCGCGACCCTGAAGC
TAGTAAGAGCAGCCTTTGGGCAGCCGTTGCTGCAGCCGAGTCGGATCACT
CTTGGGTATCCGCTGTGCCACGAGCTGTTAGAGATGACACTGTGGGCGAG
CTTTGGGCGACGGCGGCTGCTTGCGGAAGGGTGAATGAGGATGCACTCAA
GTACCGCACGAGGAAGGACCGCCTTGAGAAAGTCATTATTCGTGCCTCGG
G GTGAGTGCAGCCAGTGCTCTCGGCTCGCGTATATGTGGAATGTTGGTAT
CTTTCCGGTCTAAGAGTGAAAAAAGAGAGCAAATGGGCAATGCTTCGCTC
GAGGTGGACAGAACAGAATATGTTACCCAAGCCAAACTATTTCCTCACGA
CTGAATACCTTGCCGAGACTGGAACACGTGCATCCAGATTTGAAATATAC
GTTGGCCTATTTTCTTGCTTGTATAGTAAAGGAGGCCACAAGACCATTCA
TAACGTCGATCAAATGAGTTCCTGGCAAGTAAGGCATCTTGTGGTATTGT
TGTACTGTAGCACACCGTAACACCTATACTCTACATATCTCAGTTTCGAG
TGCAAGTGGACAAGTTCTCAGAGTCTAACAGCAAGGTACTCGGGATGACC
ATTATTGTGCAAAACGACTCGAACATCTTTTCACGAAAGATATGGCAGGG
AGAGAGAGTATGCTGTCTGTCACGCAGAGTATGAGCTTGAGAGAACATGA
ACAAAGGAGTATGAAACAGTGTACATAAAGAGACGACACACCAGCTGCCG
TATTGCCTGCCTGCTTGCCCTCCCTTTTCTCCCTCCCTCACAACAGCTTT
CTCGGGGGAGTCCCCTACCCGGAGTACTTTGGTCGTACCCCTCTGGCTGC
TTCTGAGTTACTCCCCGACAGGCTTCCCGGGGATGCTATCCTTGTCCGCA
ACTGTGAGCGATTCTTCTTGTGTGTCCCCAACTCCTGGAAGGACAGCCCC
TGGTTGAGCTGA GCGTCCTCCATGGTTTGAGGATGTGCCTTGTAGGGAGA
ACTGGGGTTGTGTGTTGATGGGGAGGGGGAGAGTTGCGGTAGGCCGAGCA
ACCCATGGTTTGGCCTTGACCTGTGCCCTTCTGGACTGCCTCCCTTTTTA
CTGTTATTTCCCCATCCCCACCTTCTCCTTTGTGAGTCTCCTTACTTCAT
CTGATTGCCCTTTAGATTGTGCTGGAATCTTGTTGGTACATTATTTTTTG
AATATATTAATGCATTCCCTCCAGTTTGCTTCAGATTTGTGCCCCAGAGC
CCTTCTCACTGAGTTAGGGAACCATACACAGTTAGTTGGTGCAAATAAAT
CTTTAAAAGTTGGACAACCGTCAGACCTGGGACACTGCAACAAGCACAAC
TTTGGGGGGGTGCAGAGGGTTGGGGTTAGGACCAAGAGTATGGGGAGCAG
GAGACAGATGTACAGTTCCTCGGCCATGGTCCCCCCAGGAGGATGCACTC
TTGTCAAGCACAATGCAAGTACAAAAGAGAAAATGTTGCTGATTGCTGCT
GGGGTGAACCCGGGGACACAGGGGTGAGTAGGTTGGGGGGGACCTCAGGC
TGGTGCAGAGACACTGCCTACCCTACATGGCCTTTGGGCCTTGAGGACGG
TGTTCTGTCGTCACATCATTGTACAGGGGTAAAGGACCAGCTAGTCCAGG
CAGGTCAACAGGAAGTGGTCAATGGTAGGCCGGGGTTGCTCCACGACCAC
CCAGCCTGGATAATTTGTTGTGTTTGCCGAGAAGTTGAGAATCTGCATTG
CTCACCTCGGGGATTTCTTTCTGCTGCCATTTGCAGTGCGCTGCTCGAGC
TGGGGAGGGGAGGGGACTTTTTCATGGAAAGATTGTATTTTGATTTTTTG
AAATTGTTGGGGAGGAGAACAAGTGTACACAGGGGAGAGGAGAGCAAGGG
TTCATGATTTTTGTTTTTGGTTGGGCGGTAGGATAAGAGGCACACCACGC
CTCTTTTTTGGCAGAGACTTAGTTGATGTGTGAGGCACAGATTACTGTGT
GCGAGACTGGGGAACTTCTGTGTTCCACATAGCATGGGGCGCCCCCCCCT
ACTCTCTGCTTCACTATCGATGAAATGTTCCCTGAAGACTTAGGGTTGTG
TGTGTGACAGGTCATTGGTAGATGGTAATGATAGTATGGTGGGAGAGGGT
CGGGCTTTCAGCGACTGGTGACTGGTGACGACCTAGGAGCATTATGGATA
ATTGTTTGATGTTTGTTAGGAGCACTCACTCAGGAGAACGCCTGAGTTGG
CTGGAAAATTGACTGAGCAAAGATGAGAGGAGGGGTTACAGACTGGGTGC
AGTACGCTGGCAGTGTGAATGAGTTGGGATGTGATGTTGCTTGCAATGGG
GCGGCGGGAAATATGCACAAGGTGTACCTTGTGGGGAAGGCCGGTGGACA
GATTTGATGTGCATGACAAGAACACACAGTTTGCACATCTGTATTTGTAG
GGCTAGGGCTGTGTCTTGACATTTAATCGGTCAGAGGTGTAAAACTAATA
TACATCACACATACATGTGGTGTGTCAATAATACATGCATTATCCAC back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1001:13089..16335-
>mRNA_D-mesarthrocarpus_Contig1001.2.1 ID=mRNA_D-mesarthrocarpus_Contig1001.2.1|Name=mRNA_D-mesarthrocarpus_Contig1001.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=750bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1001:13089..16335- (Discosporangium mesarthrocarpum MT17_79) back to top