mRNA_D-dichotoma_M_contig1052.501.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1052.501.1
Unique NamemRNA_D-dichotoma_M_contig1052.501.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1052.501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1052contigD-dichotoma_M_contig1052:161772..162196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size425
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1052.501.1prot_D-dichotoma_M_contig1052.501.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1052 161827..162165 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927545.2034395-UTR-D-dichotoma_M_contig1052:161771..1618261622927545.2034395-UTR-D-dichotoma_M_contig1052:161771..161826Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1052 161772..161826 +
1690798028.8804834-UTR-D-dichotoma_M_contig1052:161771..1618261690798028.8804834-UTR-D-dichotoma_M_contig1052:161771..161826Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1052 161772..161826 +
1622927545.227871-UTR-D-dichotoma_M_contig1052:162165..1621961622927545.227871-UTR-D-dichotoma_M_contig1052:162165..162196Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1052 162166..162196 +
1690798028.9001966-UTR-D-dichotoma_M_contig1052:162165..1621961690798028.9001966-UTR-D-dichotoma_M_contig1052:162165..162196Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1052 162166..162196 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927545.2165582-CDS-D-dichotoma_M_contig1052:161826..1621651622927545.2165582-CDS-D-dichotoma_M_contig1052:161826..162165Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1052 161827..162165 +
1690798028.8921714-CDS-D-dichotoma_M_contig1052:161826..1621651690798028.8921714-CDS-D-dichotoma_M_contig1052:161826..162165Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1052 161827..162165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1052.501.1

>prot_D-dichotoma_M_contig1052.501.1 ID=prot_D-dichotoma_M_contig1052.501.1|Name=mRNA_D-dichotoma_M_contig1052.501.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=113bp
MTGEMAFSRVPLVSNLRRKLLCSGTDIVLHDWPQKGLDVEHKIRGSIAAK
PGLRVPHTYGVLLVLGGNSRLETKASVARLKPTRNTIIPHYTKNASLPEP
LHDETRRRSTSS*
back to top

mRNA from alignment at D-dichotoma_M_contig1052:161772..162196+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1052.501.1 ID=mRNA_D-dichotoma_M_contig1052.501.1|Name=mRNA_D-dichotoma_M_contig1052.501.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=425bp|location=Sequence derived from alignment at D-dichotoma_M_contig1052:161772..162196+ (Dictyota dichotoma ODC1387m male)
CCTGACTCTACTGTACAAACACGCATTCTTACACCGGCTCACCTCGTTAG
GAACGATGACGGGAGAGATGGCATTCTCTCGAGTCCCCTTAGTTAGCAAC
CTCCGTCGGAAGCTCTTATGCAGCGGTACCGATATAGTCTTACATGACTG
GCCTCAAAAAGGGCTCGACGTTGAGCACAAGATTCGGGGCAGCATCGCAG
CCAAGCCAGGATTAAGAGTTCCACACACATACGGCGTTCTTCTCGTACTA
GGGGGGAACTCACGTTTGGAAACCAAGGCCTCCGTAGCAAGGTTAAAACC
CACGAGAAATACTATCATACCGCACTACACTAAAAACGCCTCTCTCCCGG
AACCATTGCATGACGAGACTAGAAGAAGGTCTACGAGCAGCTGATCGAGC
GAGACTATGAGGTTTTCCATCTCAC
back to top

Coding sequence (CDS) from alignment at D-dichotoma_M_contig1052:161772..162196+

>mRNA_D-dichotoma_M_contig1052.501.1 ID=mRNA_D-dichotoma_M_contig1052.501.1|Name=mRNA_D-dichotoma_M_contig1052.501.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=678bp|location=Sequence derived from alignment at D-dichotoma_M_contig1052:161772..162196+ (Dictyota dichotoma ODC1387m male)
ATGACGGGAGAGATGGCATTCTCTCGAGTCCCCTTAGTTAGCAACCTCCG
TCGGAAGCTCTTATGCAGCGGTACCGATATAGTCTTACATGACTGGCCTC
AAAAAGGGCTCGACGTTGAGCACAAGATTCGGGGCAGCATCGCAGCCAAG
CCAGGATTAAGAGTTCCACACACATACGGCGTTCTTCTCGTACTAGGGGG
GAACTCACGTTTGGAAACCAAGGCCTCCGTAGCAAGGTTAAAACCCACGA
GAAATACTATCATACCGCACTACACTAAAAACGCCTCTCTCCCGGAACCA
TTGCATGACGAGACTAGAAGAAGGTCTACGAGCAGCTGAATGACGGGAGA
GATGGCATTCTCTCGAGTCCCCTTAGTTAGCAACCTCCGTCGGAAGCTCT
TATGCAGCGGTACCGATATAGTCTTACATGACTGGCCTCAAAAAGGGCTC
GACGTTGAGCACAAGATTCGGGGCAGCATCGCAGCCAAGCCAGGATTAAG
AGTTCCACACACATACGGCGTTCTTCTCGTACTAGGGGGGAACTCACGTT
TGGAAACCAAGGCCTCCGTAGCAAGGTTAAAACCCACGAGAAATACTATC
ATACCGCACTACACTAAAAACGCCTCTCTCCCGGAACCATTGCATGACGA
GACTAGAAGAAGGTCTACGAGCAGCTGA
back to top