mRNA_D-dichotoma_M_contig969.20379.1 (mRNA) Dictyota dichotoma ODC1387m male
Overview
Homology
BLAST of mRNA_D-dichotoma_M_contig969.20379.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A) HSP 1 Score: 98.6 bits (244), Expect = 4.810e-24 Identity = 45/107 (42.06%), Postives = 68/107 (63.55%), Query Frame = 1 Query: 1 EPQSYRVACTSPNKDIWADAMRREFQGLIDNDTFETAALPVGRKPITAKWIYSWKANHLGEVTRGKARLVARGFMQREGLDYLDTFSPTPVSSSIRMIVTSALQRDW 321 +P++ A TSP+ + W AM E + L N+T++ P GRK + KW++ K N G+V R KARLVARG+ Q EG+DY +TFSP + SIR ++ ++++DW Sbjct: 30 DPETLEEALTSPDAEKWKLAMEEELENLKRNETWDIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSIRTLLAFSVEQDW 136
BLAST of mRNA_D-dichotoma_M_contig969.20379.1 vs. uniprot
Match: A0A6H5KBJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ6_9PHAE) HSP 1 Score: 104 bits (260), Expect = 6.890e-24 Identity = 52/108 (48.15%), Postives = 66/108 (61.11%), Query Frame = 1 Query: 4 PQSYRVACTSPNKDIWADAMRREFQGLIDNDTFETAALPVGRKPITAKWIYSWKANHLGEVTRGKARLVARGFMQREGLDYLDTFSPTPVSSSIRMIVTSALQRDWTL 327 P++Y A P+ IW +A R+EF GL TFE G I+AKW+YSWK + G R KARLVARGF QREG+D+ +TFSP P +SIR++ A DW L Sbjct: 1251 PETYGEAHAGPHHHIWTNAERKEFFGLNAVGTFEER----GTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDL 1354
BLAST of mRNA_D-dichotoma_M_contig969.20379.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE) HSP 1 Score: 103 bits (258), Expect = 1.290e-23 Identity = 51/106 (48.11%), Postives = 65/106 (61.32%), Query Frame = 1 Query: 4 PQSYRVACTSPNKDIWADAMRREFQGLIDNDTFETAALPVGRKPITAKWIYSWKANHLGEVTRGKARLVARGFMQREGLDYLDTFSPTPVSSSIRMIVTSALQRDW 321 P++Y A P+ IW +A R+EF GL TFE G I+AKW+YSWK + G R KARLVARGF QREG+D+ +TFSP P +SIR++ A DW Sbjct: 1369 PETYGEAHAGPHHHIWTNAERKEFFGLNAVGTFEEQR---GTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDW 1471
BLAST of mRNA_D-dichotoma_M_contig969.20379.1 vs. uniprot
Match: A0A6V7QA77_ANACO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7QA77_ANACO) HSP 1 Score: 96.3 bits (238), Expect = 1.340e-23 Identity = 46/109 (42.20%), Postives = 65/109 (59.63%), Query Frame = 1 Query: 1 EPQSYRVACTSPNKDIWADAMRREFQGLIDNDTFETAALPVGRKPITAKWIYSWKANHLGEVTRGKARLVARGFMQREGLDYLDTFSPTPVSSSIRMIVTSALQRDWTL 327 EP +Y A W +AM+ E Q L +N+T+ LP G KPI KW++ K N G V R KARL+A+GF QREG+DY +TF+P +++R ++ A R+W L Sbjct: 3 EPDTYEQASQDSK---WVEAMQAELQALEENNTWTMVPLPPGHKPIGCKWVFKIKYNSNGTVERYKARLIAKGFTQREGIDYTETFTPVAKLTTVRCLLAVAAVRNWRL 108
BLAST of mRNA_D-dichotoma_M_contig969.20379.1 vs. uniprot
Match: A0A5N6PD02_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PD02_9ASTR) HSP 1 Score: 102 bits (254), Expect = 4.350e-23 Identity = 51/109 (46.79%), Postives = 70/109 (64.22%), Query Frame = 1 Query: 1 EPQSYRVACTSPNKDIWADAMRREFQGLIDNDTFETAALPVGRKPITAKWIYSWKANHLGEVTRGKARLVARGFMQREGLDYLDTFSPTPVSSSIRMIVTSALQRDWTL 327 EP+S+R A N W DAM+RE + L +N+T+ LP G+ I +KW+Y K GE+ R KARLVARGF Q EG+DY DTF+P +IR ++T A++R+W L Sbjct: 450 EPKSFREAMQDKN---WRDAMQREIKALEENETWTLETLPKGKHAIDSKWVYKIKYKPNGEIERYKARLVARGFTQIEGVDYHDTFAPVAKLVTIRTLITVAVKRNWLL 555
BLAST of mRNA_D-dichotoma_M_contig969.20379.1 vs. uniprot
Match: A0A6H5JVD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD9_9PHAE) HSP 1 Score: 101 bits (252), Expect = 8.290e-23 Identity = 51/108 (47.22%), Postives = 66/108 (61.11%), Query Frame = 1 Query: 4 PQSYRVACTSPNKDIWADAMRREFQGLIDNDTFETAALPVGRKPITAKWIYSWKANHLGEVTRGKARLVARGFMQREGLDYLDTFSPTPVSSSIRMIVTSALQRDWTL 327 P++Y A P+ IW +A R+EF GL TFE G I+AKW+YSWK + G R KARLVARGF QRE +D+++TFSP P +SIR++ A DW L Sbjct: 1483 PETYGEAHAGPHHHIWTNAERKEFFGLNAVGTFEEQR---GTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREVVDFVETFSPCPSITSIRLLAAIACVLDWDL 1587
BLAST of mRNA_D-dichotoma_M_contig969.20379.1 vs. uniprot
Match: A0A6H5JTA3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTA3_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 2.080e-22 Identity = 48/107 (44.86%), Postives = 67/107 (62.62%), Query Frame = 1 Query: 1 EPQSYRVACTSPNKDIWADAMRREFQGLIDNDTFETAA-LPVGRKPITAKWIYSWKANHLGEVTRGKARLVARGFMQREGLDYLDTFSPTPVSSSIRMIVTSALQRD 318 EP SYR A S + IW M EF+GL+ F A P+G I A+W+Y W A+ G++ + KARLVA GF Q+ G+DYL+TFSPT ++SIR+++ A + D Sbjct: 195 EPGSYREARQSKHTVIWDKGMSAEFEGLLRAGMFALAVKAPIGCNVIDARWVYKWSADKTGKIVKAKARLVAEGFKQKYGVDYLETFSPTANAASIRLLIALACKYD 301
BLAST of mRNA_D-dichotoma_M_contig969.20379.1 vs. uniprot
Match: A0A151THY7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151THY7_CAJCA) HSP 1 Score: 95.5 bits (236), Expect = 2.310e-22 Identity = 46/109 (42.20%), Postives = 67/109 (61.47%), Query Frame = 1 Query: 1 EPQSYRVACTSPNKDIWADAMRREFQGLIDNDTFETAALPVGRKPITAKWIYSWKANHLGEVTRGKARLVARGFMQREGLDYLDTFSPTPVSSSIRMIVTSALQRDWTL 327 EP + R A SP W AM E L+ N T++ LP RKP+ +KWI+ K N G +++ KAR+VARG+ Q+ GLDY +TFSP +IR+I++ AL + W++ Sbjct: 20 EPTTVREAFQSPQ---WVQAMHEELNALVKNQTWDLVPLPPHRKPVGSKWIFRLKHNPDGSISKYKARVVARGYTQQHGLDYQETFSPVVKHVTIRVILSIALSKGWSI 125
BLAST of mRNA_D-dichotoma_M_contig969.20379.1 vs. uniprot
Match: A0A5N5I1R6_9ROSA (DNA polymerase zeta catalytic subunit-like n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5I1R6_9ROSA) HSP 1 Score: 100 bits (248), Expect = 2.800e-22 Identity = 45/102 (44.12%), Postives = 65/102 (63.73%), Query Frame = 1 Query: 1 EPQSYRVACTSPNKDIWADAMRREFQGLIDNDTFETAALPVGRKPITAKWIYSWKANHLGEVTRGKARLVARGFMQREGLDYLDTFSPTPVSSSIRMIVTSA 306 EPQ+Y+ A +SP W +A+ E + ++ N T+E LP G KP+ KWI+ K G + + KAR+VA+G+ QREGLDY DT+SP +SIRM++ A Sbjct: 361 EPQTYKEAISSPEASFWKEAINVEIESIMQNHTWELVDLPPGNKPLGYKWIFKRKMKADGSIDKYKARIVAKGYKQREGLDYFDTYSPVTRITSIRMLIVIA 462
BLAST of mRNA_D-dichotoma_M_contig969.20379.1 vs. uniprot
Match: UPI000905BFBB (uncharacterized protein LOC109210846 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI000905BFBB) HSP 1 Score: 100 bits (248), Expect = 2.860e-22 Identity = 47/109 (43.12%), Postives = 69/109 (63.30%), Query Frame = 1 Query: 1 EPQSYRVACTSPNKDIWADAMRREFQGLIDNDTFETAALPVGRKPITAKWIYSWKANHLGEVTRGKARLVARGFMQREGLDYLDTFSPTPVSSSIRMIVTSALQRDWTL 327 EP SY AC++P W AM E Q L +N T++ LP G+K + KW+Y K + G + R KARLV RG +QREG+DY +TFSP ++IR +++ A+++ WT+ Sbjct: 856 EPTSYNQACSNPG---WVQAMDSELQALEENHTWDVVLLPSGKKTLPCKWVYKVKHHADGSIERLKARLVIRGDVQREGIDYTETFSPVVKMTTIRCLLSIAVKKGWTI 961 The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig969.20379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dichotoma_M_contig969.20379.1 >prot_D-dichotoma_M_contig969.20379.1 ID=prot_D-dichotoma_M_contig969.20379.1|Name=mRNA_D-dichotoma_M_contig969.20379.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=109bp EPQSYRVACTSPNKDIWADAMRREFQGLIDNDTFETAALPVGRKPITAKWback to top mRNA from alignment at D-dichotoma_M_contig969:256466..256792- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dichotoma_M_contig969.20379.1 ID=mRNA_D-dichotoma_M_contig969.20379.1|Name=mRNA_D-dichotoma_M_contig969.20379.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=327bp|location=Sequence derived from alignment at D-dichotoma_M_contig969:256466..256792- (Dictyota dichotoma ODC1387m male)back to top Coding sequence (CDS) from alignment at D-dichotoma_M_contig969:256466..256792- >mRNA_D-dichotoma_M_contig969.20379.1 ID=mRNA_D-dichotoma_M_contig969.20379.1|Name=mRNA_D-dichotoma_M_contig969.20379.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=654bp|location=Sequence derived from alignment at D-dichotoma_M_contig969:256466..256792- (Dictyota dichotoma ODC1387m male)back to top |