mRNA_D-dichotoma_M_contig952.20237.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig952.20237.1
Unique NamemRNA_D-dichotoma_M_contig952.20237.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig952.20237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig952contigD-dichotoma_M_contig952:9291..9967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size677
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig952.20237.1prot_D-dichotoma_M_contig952.20237.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig952 9297..9686 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931204.9122415-UTR-D-dichotoma_M_contig952:9290..92961622931204.9122415-UTR-D-dichotoma_M_contig952:9290..9296Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig952 9291..9296 +
1690799664.0361946-UTR-D-dichotoma_M_contig952:9290..92961690799664.0361946-UTR-D-dichotoma_M_contig952:9290..9296Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig952 9291..9296 +
1622931204.949091-UTR-D-dichotoma_M_contig952:9686..99671622931204.949091-UTR-D-dichotoma_M_contig952:9686..9967Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig952 9687..9967 +
1690799664.060379-UTR-D-dichotoma_M_contig952:9686..99671690799664.060379-UTR-D-dichotoma_M_contig952:9686..9967Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig952 9687..9967 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931204.929319-CDS-D-dichotoma_M_contig952:9296..96861622931204.929319-CDS-D-dichotoma_M_contig952:9296..9686Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig952 9297..9686 +
1690799664.0462162-CDS-D-dichotoma_M_contig952:9296..96861690799664.0462162-CDS-D-dichotoma_M_contig952:9296..9686Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig952 9297..9686 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig952.20237.1

>prot_D-dichotoma_M_contig952.20237.1 ID=prot_D-dichotoma_M_contig952.20237.1|Name=mRNA_D-dichotoma_M_contig952.20237.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=130bp
MSPSPSSLRSQTAIFRSRRGAANENIDTDVHSDMWIMSIICERRLSIVAA
EFCLPVFLTGKPMDFSDATWLAVRNASGVSLSQPSARATTHAPVTQEKHV
AKMLFFISRTSNEELDIAHLDHHAPFTRA*
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mRNA from alignment at D-dichotoma_M_contig952:9291..9967+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig952.20237.1 ID=mRNA_D-dichotoma_M_contig952.20237.1|Name=mRNA_D-dichotoma_M_contig952.20237.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=677bp|location=Sequence derived from alignment at D-dichotoma_M_contig952:9291..9967+ (Dictyota dichotoma ODC1387m male)
TATGGGATGAGTCCCTCACCGTCGTCGCTTCGTTCCCAAACGGCTATATT
TCGCTCCAGAAGAGGAGCAGCAAACGAGAACATCGATACTGATGTCCATT
CCGACATGTGGATCATGTCTATCATTTGCGAACGCAGACTTTCTATCGTT
GCTGCGGAATTCTGCCTCCCTGTGTTCCTCACAGGAAAACCCATGGATTT
CAGTGACGCGACCTGGCTGGCAGTCAGGAATGCTTCAGGGGTAAGCTTGT
CGCAACCATCCGCGAGGGCCACAACACATGCTCCAGTTACCCAAGAAAAG
CACGTAGCGAAGATGCTCTTCTTCATTTCACGAACATCGAACGAGGAACT
GGACATAGCACACTTGGACCACCATGCACCTTTCACGAGGGCATGATATG
CGCAAAGACCATTGCCTTCATTCCGGTACACGCTCACTTCCTCCAGAGCA
ATCCTGTGATCTCTCACGGCGGGAAAATACCGCCGCCCTTCGCTCATTGC
CTCGTGTATACAGCCTCTTTCGGTTTCACCAACGCCCACTGCAACCACCT
CAACGTTTTGAGGGGTTATCCTTTCCATACTTGACTTACGGTAGTGTTGA
TCGGACTTGTCCACGAATCTTGGGTCAGCTACCTACACCTCTCCAGACAG
TAGTCTCATCGTGTGTTCTCATCATGA
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig952:9291..9967+

>mRNA_D-dichotoma_M_contig952.20237.1 ID=mRNA_D-dichotoma_M_contig952.20237.1|Name=mRNA_D-dichotoma_M_contig952.20237.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=780bp|location=Sequence derived from alignment at D-dichotoma_M_contig952:9291..9967+ (Dictyota dichotoma ODC1387m male)
ATGAGTCCCTCACCGTCGTCGCTTCGTTCCCAAACGGCTATATTTCGCTC
CAGAAGAGGAGCAGCAAACGAGAACATCGATACTGATGTCCATTCCGACA
TGTGGATCATGTCTATCATTTGCGAACGCAGACTTTCTATCGTTGCTGCG
GAATTCTGCCTCCCTGTGTTCCTCACAGGAAAACCCATGGATTTCAGTGA
CGCGACCTGGCTGGCAGTCAGGAATGCTTCAGGGGTAAGCTTGTCGCAAC
CATCCGCGAGGGCCACAACACATGCTCCAGTTACCCAAGAAAAGCACGTA
GCGAAGATGCTCTTCTTCATTTCACGAACATCGAACGAGGAACTGGACAT
AGCACACTTGGACCACCATGCACCTTTCACGAGGGCATGAATGAGTCCCT
CACCGTCGTCGCTTCGTTCCCAAACGGCTATATTTCGCTCCAGAAGAGGA
GCAGCAAACGAGAACATCGATACTGATGTCCATTCCGACATGTGGATCAT
GTCTATCATTTGCGAACGCAGACTTTCTATCGTTGCTGCGGAATTCTGCC
TCCCTGTGTTCCTCACAGGAAAACCCATGGATTTCAGTGACGCGACCTGG
CTGGCAGTCAGGAATGCTTCAGGGGTAAGCTTGTCGCAACCATCCGCGAG
GGCCACAACACATGCTCCAGTTACCCAAGAAAAGCACGTAGCGAAGATGC
TCTTCTTCATTTCACGAACATCGAACGAGGAACTGGACATAGCACACTTG
GACCACCATGCACCTTTCACGAGGGCATGA
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