mRNA_D-dichotoma_M_contig952.20239.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig952.20239.1
Unique NamemRNA_D-dichotoma_M_contig952.20239.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig952.20239.1 vs. uniprot
Match: D7FM28_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM28_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 3.880e-22
Identity = 55/92 (59.78%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:  148 METSKAQRLHDTLQKLAPRGNHGGLGSSGLIAGGFKHRDNGLPKNDSLGAACPVLPPSVGLLPRALRNEQNCLYMYFVKPGHFKTTFADSDE 423
            ME SK QRLHDTL+KLAP+GNHGGLGS+GL+ GGFK RDNGLPKN                           LY YFVKPGHFKTTFADSD+
Sbjct:    1 MEDSKLQRLHDTLKKLAPKGNHGGLGSAGLVKGGFKQRDNGLPKNG--------------------------LYSYFVKPGHFKTTFADSDD 66
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BLAST of mRNA_D-dichotoma_M_contig952.20239.1 vs. uniprot
Match: A0A6H5L1A4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A4_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 7.330e-22
Identity = 55/91 (60.44%), Postives = 59/91 (64.84%), Query Frame = 1 
Query:  148 METSKAQRLHDTLQKLAPRGNHGGLGSSGLIAGGFKHRDNGLPKNDSLGAACPVLPPSVGLLPRALRNEQNCLYMYFVKPGHFKTTFADSD 420
            ME SK QRLHDTL+KLAP+GNHGGLGS+GL+ GGFK RDNGLPKN                           LY YFVKPGHFKTTFADSD
Sbjct:    1 MEDSKLQRLHDTLKKLAPKGNHGGLGSAGLVRGGFKQRDNGLPKNG--------------------------LYSYFVKPGHFKTTFADSD 65
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BLAST of mRNA_D-dichotoma_M_contig952.20239.1 vs. uniprot
Match: A0A835ZCI6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCI6_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 4.500e-9
Identity = 43/93 (46.24%), Postives = 47/93 (50.54%), Query Frame = 1 
Query:  148 METSKAQRLHDTLQKLAPRGNHGGLGSSGLIAG-GFKHRDNGLPKNDSLGAACPVLPPSVGLLPRALRNEQNCLYMYFVKPGHFKTTFADSDE 423
            ME  K Q+LHDTL KL P GNHG LGS     G G  HRDNGLPKN                           LY +FV+ GHFK  FADSD+
Sbjct:    1 MEDWKLQQLHDTLAKLRPTGNHG-LGSRSQTTGIGHAHRDNGLPKNG--------------------------LYSFFVREGHFKKKFADSDD 66
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig952.20239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FM28_ECTSI3.880e-2259.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1A4_9PHAE7.330e-2260.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZCI6_9STRA4.500e-946.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig952contigD-dichotoma_M_contig952:56225..58297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue1.2e-20
Seed eggNOG ortholog2880.D7FM28
EggNOG OGs2E11N@1,2S8EB@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_010440.1
Exons4
Model size1121
Cds size972
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig952.20239.1prot_D-dichotoma_M_contig952.20239.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig952 56225..58150 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931204.6432495-CDS-D-dichotoma_M_contig952:56224..569821622931204.6432495-CDS-D-dichotoma_M_contig952:56224..56982Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig952 56225..56982 -
1690799663.9091554-CDS-D-dichotoma_M_contig952:56224..569821690799663.9091554-CDS-D-dichotoma_M_contig952:56224..56982Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig952 56225..56982 -
1622931204.6575897-CDS-D-dichotoma_M_contig952:57352..574301622931204.6575897-CDS-D-dichotoma_M_contig952:57352..57430Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig952 57353..57430 -
1690799663.9296904-CDS-D-dichotoma_M_contig952:57352..574301690799663.9296904-CDS-D-dichotoma_M_contig952:57352..57430Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig952 57353..57430 -
1622931204.6785293-CDS-D-dichotoma_M_contig952:57694..577641622931204.6785293-CDS-D-dichotoma_M_contig952:57694..57764Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig952 57695..57764 -
1690799663.9415357-CDS-D-dichotoma_M_contig952:57694..577641690799663.9415357-CDS-D-dichotoma_M_contig952:57694..57764Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig952 57695..57764 -
1622931204.692363-CDS-D-dichotoma_M_contig952:58084..581501622931204.692363-CDS-D-dichotoma_M_contig952:58084..58150Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig952 58085..58150 -
1690799663.9528992-CDS-D-dichotoma_M_contig952:58084..581501690799663.9528992-CDS-D-dichotoma_M_contig952:58084..58150Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig952 58085..58150 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931204.7108529-UTR-D-dichotoma_M_contig952:58150..582971622931204.7108529-UTR-D-dichotoma_M_contig952:58150..58297Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig952 58151..58297 -
1690799663.9630237-UTR-D-dichotoma_M_contig952:58150..582971690799663.9630237-UTR-D-dichotoma_M_contig952:58150..58297Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig952 58151..58297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig952.20239.1

>prot_D-dichotoma_M_contig952.20239.1 ID=prot_D-dichotoma_M_contig952.20239.1|Name=mRNA_D-dichotoma_M_contig952.20239.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=324bp
METSKAQRLHDTLQKLAPRGNHGGLGSSGLIAGGFKHRDNGLPKNDSLGA
ACPVLPPSVGLLPRALRNEQNCLYMYFVKPGHFKTTFADSDEDDDRAAGG
DKDSDDASAQQAADKKSKRRREKEARKAEKAAKKLAKKAREKKKLEDPEA
TAPAEEAGQLHGATKQAGTKGNDDLCAEGAVSSKRKKSRKAKPERESGAC
SNGAAKGDGDNDCNSDDDDDADEVANGKVKEAGCEATPVKKSKRKVKSRK
EKTEQEGREVCPGDAVVENGLVEKRENGLITSAVKKKGKKRKRSSIETDE
AELDGMPEESDGLSTKKRKKKKKG
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mRNA from alignment at D-dichotoma_M_contig952:56225..58297-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig952.20239.1 ID=mRNA_D-dichotoma_M_contig952.20239.1|Name=mRNA_D-dichotoma_M_contig952.20239.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=2073bp|location=Sequence derived from alignment at D-dichotoma_M_contig952:56225..58297- (Dictyota dichotoma ODC1387m male)
ACTAAGTTTTGTCAATTTTTTCCCTTGAAAATTCATTAACTATAATAAAA
GGTACGGCGGATACGACGCTCCTGACCAACAAAGCGGCTGATCTCGAAAG
AGGAGCCCGAGGGCGAACTGCACTTCTAGCTCTGGTAGAGTAGAGCTATG
GAGACATCAAAAGCACAACGACTGCATGATACGCTCCAAAAACTTGCTCC
GAGGGGAAACCATGTGAGTTTCGTTGCTGTTCCTAATCTTGTAGTTGGAC
AAACGCCCACCACAATGGTCATCCTGCTTCGTAGTGCTGCAAGCCCCCAA
GACAGCATTCCCTCCCACTAGCTTCGAGCACACTCCTTGTCAATGCTCCG
TGATACATGTTACATGGACACTGGGTTTCTGTCTTAGAGAAATATCTGGA
GCATGAAATGGACTTGGATCGTTGTCGACCATCTTGATGGCTCGAAGTTG
CAGATGTTGACGTCCCTGGTCACCTTGCGTCTAACTCGCTTCGCCGTTGG
TACTGCAATCCTACGTTTTCGCACTCGTACAAGGGCGGCCTTGGAAGTTC
GGGATTGATTGCAGGGGGTTTCAAGCATAGAGACAATGGACTCCCGAAAA
ATGGTGAGCCGACGCTCGAAAAAAATGCGGAAGCGAGTCCCACTGCGTGG
GACGAGCTCCCTGACTCGAGCGCGTGACTGCTCGACGTCGCCTACACATC
CTGCCGTCAACGACCATTTTGATCCTCGCGTCCGAACATGATCACCTGCC
TCAACTTCTCTCAGGAGATGTATGTTCTGCCAATGATTGCGAGGTTGATT
GTATTCATGCCTTCTTCGTGTCATCGGTCGGTTGTCCTTTTATCCTCTCA
CTGCTCCATGCGCACAGACTCTCTCGGAGCCGCGTGTCCCGTGTTGCCTC
CTAGTGTCGGTCTGCTTCCTCGTGCCCTTCGCAACGAGCAGAACTGTGAG
TTGGATAACGGCCTGGCTTAGGCGAACGTTTCTCCGATTTCTATTGATAG
GCATGATTCGAGCAGACGTTGCGCAGATCAAGCGACTCTCGACTGACATG
GAAGAGAAAGATGAGCTTGTTAGGAACCATAGGAAGTTTTGCTTGCGGAG
GGTGTTGTTTGCACTGCTTCGCGTTGACACTCGTGGCAGCTTAACCTCTT
ACGGCCGCGTCTTAATGAAACTCAACAGCTGGAGAGAGCACCATGCCGTG
TCCCCTTATCCCGTGTATATTCCGTTTGCCCCCTCCCCCCTTCGTTTTCA
TTTTCCTTCGACGGTGGCACCGGTCTCTTCACTGGAACCGGCAAACGGAA
CGAATCATGAGGTAGGCCTCTACATGTACTTCGTAAAGCCTGGGCATTTC
AAGACCACCTTCGCCGACAGCGACGAAGATGACGACCGGGCTGCCGGCGG
CGACAAGGACTCCGACGATGCTTCCGCGCAGCAAGCAGCCGACAAGAAGT
CGAAACGTCGACGGGAGAAGGAGGCCAGGAAGGCCGAGAAGGCTGCGAAG
AAGCTGGCGAAGAAAGCCCGGGAGAAGAAGAAGCTAGAGGATCCGGAGGC
GACCGCTCCTGCCGAGGAGGCAGGGCAGCTTCATGGCGCAACGAAGCAAG
CGGGAACCAAGGGCAATGATGATTTGTGTGCGGAAGGGGCAGTGAGTTCC
AAGCGGAAGAAAAGTCGCAAGGCTAAGCCAGAGCGGGAATCAGGCGCCTG
TAGCAATGGTGCGGCCAAGGGGGATGGTGATAATGATTGTAATAGTGATG
ATGACGATGACGCTGATGAAGTCGCAAACGGTAAGGTGAAAGAGGCTGGG
TGTGAAGCCACCCCCGTCAAGAAGTCGAAAAGGAAGGTTAAGTCTCGGAA
GGAGAAGACGGAGCAGGAGGGTCGGGAGGTATGCCCCGGCGACGCTGTCG
TAGAGAACGGCTTGGTAGAGAAGAGAGAGAATGGACTCATCACAAGCGCT
GTGAAGAAGAAGGGCAAGAAGCGAAAGCGATCTTCGATAGAGACTGACGA
GGCCGAGCTGGATGGTATGCCCGAGGAGAGTGACGGGCTCAGCACGAAAA
AGCGGAAGAAGAAGAAGAAGGGA
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig952:56225..58297-

>mRNA_D-dichotoma_M_contig952.20239.1 ID=mRNA_D-dichotoma_M_contig952.20239.1|Name=mRNA_D-dichotoma_M_contig952.20239.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1944bp|location=Sequence derived from alignment at D-dichotoma_M_contig952:56225..58297- (Dictyota dichotoma ODC1387m male)
ATGGAGACATCAAAAGCACAACGACTGCATGATACGCTCCAAAAACTTGC
TCCGAGGGGAAACCATATGGAGACATCAAAAGCACAACGACTGCATGATA
CGCTCCAAAAACTTGCTCCGAGGGGAAACCATGGCGGCCTTGGAAGTTCG
GGATTGATTGCAGGGGGTTTCAAGCATAGAGACAATGGACTCCCGAAAAA
TGGGCGGCCTTGGAAGTTCGGGATTGATTGCAGGGGGTTTCAAGCATAGA
GACAATGGACTCCCGAAAAATGACTCTCTCGGAGCCGCGTGTCCCGTGTT
GCCTCCTAGTGTCGGTCTGCTTCCTCGTGCCCTTCGCAACGAGCAGAACT
ACTCTCTCGGAGCCGCGTGTCCCGTGTTGCCTCCTAGTGTCGGTCTGCTT
CCTCGTGCCCTTCGCAACGAGCAGAACTGCCTCTACATGTACTTCGTAAA
GCCTGGGCATTTCAAGACCACCTTCGCCGACAGCGACGAAGATGACGACC
GGGCTGCCGGCGGCGACAAGGACTCCGACGATGCTTCCGCGCAGCAAGCA
GCCGACAAGAAGTCGAAACGTCGACGGGAGAAGGAGGCCAGGAAGGCCGA
GAAGGCTGCGAAGAAGCTGGCGAAGAAAGCCCGGGAGAAGAAGAAGCTAG
AGGATCCGGAGGCGACCGCTCCTGCCGAGGAGGCAGGGCAGCTTCATGGC
GCAACGAAGCAAGCGGGAACCAAGGGCAATGATGATTTGTGTGCGGAAGG
GGCAGTGAGTTCCAAGCGGAAGAAAAGTCGCAAGGCTAAGCCAGAGCGGG
AATCAGGCGCCTGTAGCAATGGTGCGGCCAAGGGGGATGGTGATAATGAT
TGTAATAGTGATGATGACGATGACGCTGATGAAGTCGCAAACGGTAAGGT
GAAAGAGGCTGGGTGTGAAGCCACCCCCGTCAAGAAGTCGAAAAGGAAGG
TTAAGTCTCGGAAGGAGAAGACGGAGCAGGAGGGTCGGGAGGTATGCCCC
GGCGACGCTGTCGTAGAGAACGGCTTGGTAGAGAAGAGAGAGAATGGACT
CATCACAAGCGCTGTGAAGAAGAAGGGCAAGAAGCGAAAGCGATCTTCGA
TAGAGACTGACGAGGCCGAGCTGGATGGTATGCCCGAGGAGAGTGACGGG
CTCAGCACGAAAAAGCGGAAGAAGAAGAAGAAGGGAGCCTCTACATGTAC
TTCGTAAAGCCTGGGCATTTCAAGACCACCTTCGCCGACAGCGACGAAGA
TGACGACCGGGCTGCCGGCGGCGACAAGGACTCCGACGATGCTTCCGCGC
AGCAAGCAGCCGACAAGAAGTCGAAACGTCGACGGGAGAAGGAGGCCAGG
AAGGCCGAGAAGGCTGCGAAGAAGCTGGCGAAGAAAGCCCGGGAGAAGAA
GAAGCTAGAGGATCCGGAGGCGACCGCTCCTGCCGAGGAGGCAGGGCAGC
TTCATGGCGCAACGAAGCAAGCGGGAACCAAGGGCAATGATGATTTGTGT
GCGGAAGGGGCAGTGAGTTCCAAGCGGAAGAAAAGTCGCAAGGCTAAGCC
AGAGCGGGAATCAGGCGCCTGTAGCAATGGTGCGGCCAAGGGGGATGGTG
ATAATGATTGTAATAGTGATGATGACGATGACGCTGATGAAGTCGCAAAC
GGTAAGGTGAAAGAGGCTGGGTGTGAAGCCACCCCCGTCAAGAAGTCGAA
AAGGAAGGTTAAGTCTCGGAAGGAGAAGACGGAGCAGGAGGGTCGGGAGG
TATGCCCCGGCGACGCTGTCGTAGAGAACGGCTTGGTAGAGAAGAGAGAG
AATGGACTCATCACAAGCGCTGTGAAGAAGAAGGGCAAGAAGCGAAAGCG
ATCTTCGATAGAGACTGACGAGGCCGAGCTGGATGGTATGCCCGAGGAGA
GTGACGGGCTCAGCACGAAAAAGCGGAAGAAGAAGAAGAAGGGA
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