mRNA_D-dichotoma_M_contig950.20230.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig950.20230.1
Unique NamemRNA_D-dichotoma_M_contig950.20230.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig950.20230.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 125 bits (314), Expect = 5.030e-30
Identity = 73/156 (46.79%), Postives = 90/156 (57.69%), Query Frame = 1 
Query:   64 MVKRERQTKPAPAVAAADEEAVE--EDVGQEPSSRAQICALSICPTRRQRATCPLCPVGDAFGGAPSFLAQHQRRTHPGRGRETLSSSNGDLFHRYQVCAHCGNLETNLARHQSICVRRTPRKLLPDSPAPPPVRRGPAPQRSSPASGHLRPLPAP 525
            MVKR+R     P  A    +AV   E   +  + RA        P R+ + TCPLCP+G +F G PSF+AQHQR  HPGRG+E LSS+ G  FHRY+ C HCGNLETNL+RH+SIC R+ P K  PDS A  P  + P   R    +   R   AP
Sbjct:  773 MVKRDR-----PPTAVETTKAVRGGESRQERSNPRAXXXXXXXLPPRQAKVTCPLCPIGKSFHGIPSFIAQHQRSVHPGRGQELLSSTGGHPFHRYESCPHCGNLETNLSRHRSICQRKAPPKA-PDSQASLPGNQAPDSHRDHHTTASQRSTTAP 922
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig950.20230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6P0N5L4_9CYAN5.030e-3046.79Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig950contigD-dichotoma_M_contig950:248489..249026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size539
Cds size537
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931202.625179-CDS-D-dichotoma_M_contig950:248488..2490251622931202.625179-CDS-D-dichotoma_M_contig950:248488..249025Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig950 248489..249025 +
1690799662.8829198-CDS-D-dichotoma_M_contig950:248488..2490251690799662.8829198-CDS-D-dichotoma_M_contig950:248488..249025Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig950 248489..249025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig950.20230.1prot_D-dichotoma_M_contig950.20230.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig950 248489..249025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig950.20230.1

>prot_D-dichotoma_M_contig950.20230.1 ID=prot_D-dichotoma_M_contig950.20230.1|Name=mRNA_D-dichotoma_M_contig950.20230.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=179bp
HTRARAHTHTRARATLTKQHHMVKRERQTKPAPAVAAADEEAVEEDVGQE
PSSRAQICALSICPTRRQRATCPLCPVGDAFGGAPSFLAQHQRRTHPGRG
RETLSSSNGDLFHRYQVCAHCGNLETNLARHQSICVRRTPRKLLPDSPAP
PPVRRGPAPQRSSPASGHLRPLPAPSLLL
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mRNA from alignment at D-dichotoma_M_contig950:248489..249026+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig950.20230.1 ID=mRNA_D-dichotoma_M_contig950.20230.1|Name=mRNA_D-dichotoma_M_contig950.20230.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=538bp|location=Sequence derived from alignment at D-dichotoma_M_contig950:248489..249026+ (Dictyota dichotoma ODC1387m male)
CACACACGCGCGCGCGCGCACACACACACACGCGCGCGCGCGACCCTAAC
CAAACAACACCATATGGTCAAGCGTGAGCGCCAGACGAAGCCTGCGCCCG
CTGTAGCCGCTGCGGATGAGGAGGCGGTCGAGGAGGATGTCGGCCAGGAA
CCGTCCTCACGGGCCCAAATCTGCGCCCTCTCAATTTGCCCAACGCGCCG
CCAGAGAGCCACTTGCCCCTTGTGCCCGGTGGGAGACGCTTTTGGCGGGG
CCCCCAGCTTCCTCGCCCAACACCAGCGGCGAACCCACCCAGGACGAGGG
AGGGAGACCCTCTCATCTTCCAACGGCGACCTCTTCCACAGGTACCAGGT
CTGCGCCCACTGCGGCAATCTGGAAACAAACCTAGCGAGGCACCAGAGCA
TTTGCGTGCGTCGGACCCCGCGGAAGCTCCTCCCTGACTCCCCAGCACCC
CCACCTGTGCGCCGGGGACCCGCCCCCCAACGGTCCTCCCCTGCATCTGG
CCATCTGCGACCCCTTCCAGCCCCCAGCCTTCTTCTCA
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig950:248489..249026+

>mRNA_D-dichotoma_M_contig950.20230.1 ID=mRNA_D-dichotoma_M_contig950.20230.1|Name=mRNA_D-dichotoma_M_contig950.20230.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1074bp|location=Sequence derived from alignment at D-dichotoma_M_contig950:248489..249026+ (Dictyota dichotoma ODC1387m male)
CACACACGCGCGCGCGCGCACACACACACACGCGCGCGCGCGACCCTAAC
CAAACAACACCATATGGTCAAGCGTGAGCGCCAGACGAAGCCTGCGCCCG
CTGTAGCCGCTGCGGATGAGGAGGCGGTCGAGGAGGATGTCGGCCAGGAA
CCGTCCTCACGGGCCCAAATCTGCGCCCTCTCAATTTGCCCAACGCGCCG
CCAGAGAGCCACTTGCCCCTTGTGCCCGGTGGGAGACGCTTTTGGCGGGG
CCCCCAGCTTCCTCGCCCAACACCAGCGGCGAACCCACCCAGGACGAGGG
AGGGAGACCCTCTCATCTTCCAACGGCGACCTCTTCCACAGGTACCAGGT
CTGCGCCCACTGCGGCAATCTGGAAACAAACCTAGCGAGGCACCAGAGCA
TTTGCGTGCGTCGGACCCCGCGGAAGCTCCTCCCTGACTCCCCAGCACCC
CCACCTGTGCGCCGGGGACCCGCCCCCCAACGGTCCTCCCCTGCATCTGG
CCATCTGCGACCCCTTCCAGCCCCCAGCCTTCTTCTCCACACACGCGCGC
GCGCGCACACACACACACGCGCGCGCGCGACCCTAACCAAACAACACCAT
ATGGTCAAGCGTGAGCGCCAGACGAAGCCTGCGCCCGCTGTAGCCGCTGC
GGATGAGGAGGCGGTCGAGGAGGATGTCGGCCAGGAACCGTCCTCACGGG
CCCAAATCTGCGCCCTCTCAATTTGCCCAACGCGCCGCCAGAGAGCCACT
TGCCCCTTGTGCCCGGTGGGAGACGCTTTTGGCGGGGCCCCCAGCTTCCT
CGCCCAACACCAGCGGCGAACCCACCCAGGACGAGGGAGGGAGACCCTCT
CATCTTCCAACGGCGACCTCTTCCACAGGTACCAGGTCTGCGCCCACTGC
GGCAATCTGGAAACAAACCTAGCGAGGCACCAGAGCATTTGCGTGCGTCG
GACCCCGCGGAAGCTCCTCCCTGACTCCCCAGCACCCCCACCTGTGCGCC
GGGGACCCGCCCCCCAACGGTCCTCCCCTGCATCTGGCCATCTGCGACCC
CTTCCAGCCCCCAGCCTTCTTCTC
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