mRNA_D-dichotoma_M_contig948.20198.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig948.20198.1
Unique NamemRNA_D-dichotoma_M_contig948.20198.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig948.20198.1 vs. uniprot
Match: A0A6H5JJB7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJB7_9PHAE)

HSP 1 Score: 333 bits (853), Expect = 1.370e-104
Identity = 175/211 (82.94%), Postives = 189/211 (89.57%), Query Frame = 1 
Query:  616 EGEEY---EDTLDRSVAKRVKRSAIVFRQVSWLSWWAQTILSMVAFIILLFSNAVTNRAARGNILGNGVALALSSLFASGASICWTWGYTLKARGWPRLGTLTEVDDAQLRMRNSLKMGLYINVIGMLLALVGAEQIVGTLVAKVLYSQGFQPSVMVGGVGTAEVAQAQFRALDVFIVQANTNTLLSHFCSLAATLWLLQRTPKLARLARG 1239
            +GEEY   E+ LDRSV K++KRS  VFRQVSWLSWWAQTILS VAFIILLFSNAVTNR+ARGNILGNGVALA++SL  S ASICWTWGY LKA+GW  LGTL EVDDAQ+RMR SL+MGLYINV GMLLALVGAEQIVGTLVAKVLY+QGFQPSVMVG  G AEVAQAQFRALDVFIVQANTNTLLSHFCSLAA+LWLL RTPKLA+LA+ 
Sbjct:  115 DGEEYNDGEEILDRSVIKQLKRSTTVFRQVSWLSWWAQTILSTVAFIILLFSNAVTNRSARGNILGNGVALAVASLACSAASICWTWGYNLKAKGWRNLGTLAEVDDAQVRMRGSLRMGLYINVAGMLLALVGAEQIVGTLVAKVLYAQGFQPSVMVGSAGAAEVAQAQFRALDVFIVQANTNTLLSHFCSLAASLWLLARTPKLAKLAKS 325
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BLAST of mRNA_D-dichotoma_M_contig948.20198.1 vs. uniprot
Match: A0A836CL61_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL61_9STRA)

HSP 1 Score: 176 bits (446), Expect = 4.340e-46
Identity = 105/208 (50.48%), Postives = 138/208 (66.35%), Query Frame = 1 
Query:  634 DTLDRSVAKRVKRSAIVFRQVSWLSWWAQTILSMVAFIILLFSNAVTNRAARGNILGNGVALALSSLFASGASICWTWGYTLKARGW-----PRLGTLTEVDDAQLRMRNSLKMGLYINVIGMLLALVGAEQIVGTLVAKVLYSQGFQPSVMVGGVGTAEVAQAQFRALDVFIVQANTNTLLSHFCSLAATLWLLQRTPKLARLARGI 1242
            + L+ +   R+K  A  F+++ W SWW+QTILS V+ II+LFSNA+T R+ RGN LGNGV LA  ++ ++GAS+ WTW   LKA  W      +  T TE   AQ  +  +LK+G++IN++G L ALVGAEQIVGTLVAKVLYS G     +V    ++  A  QFRALD+FI+QANTNTLLSHF SLA  L LL R   L  + + +
Sbjct:   87 EVLENAQLARLKLGASNFQRLGWFSWWSQTILSTVSAIIILFSNAITERSVRGNALGNGVFLAGLAVASAGASMFWTWTLILKATAWVGRNEKKRSTPTE---AQRNIIRALKVGVWINLLGALFALVGAEQIVGTLVAKVLYSGGITQGQVVA---SSIPATQQFRALDIFIIQANTNTLLSHFVSLAINLLLLARARTLTMIPKRV 288
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BLAST of mRNA_D-dichotoma_M_contig948.20198.1 vs. uniprot
Match: A0A7S2V450_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V450_9STRA)

HSP 1 Score: 150 bits (379), Expect = 4.340e-37
Identity = 91/194 (46.91%), Postives = 122/194 (62.89%), Query Frame = 1 
Query:  658 KRVKRSAIVFRQVSWLSWWAQTILSMVAFIILLFSNAVTNRAARGNILGNGVALALSSLFASGASICWTWGYTLKARGWPRLGTLTEVDDAQLRMRNSLKMGLYINVIGMLLALVGAEQIVGTLVAKVLYSQ-----GFQPSVMVGGVGTAEVAQAQFRALDVFIVQANTNTLLSHFCSLAATLWLLQRTPKLA 1224
            +R+ + +  F++++W+SWW Q IL+ VA +IL F+ AVT+   R N L NG  LA   +     SI WTWG    AR W R  T  ++D A   M N LK  + IN++GML+ALVGAEQIVGTLVAK+L +Q     G    +  GG G        F+ALD+F+VQANTNT+L+HF SLAA+LWL  R  +L+
Sbjct:   79 RRIWKLSNYFQRIAWISWWTQVILTTVAGVILFFTTAVTDPG-RANFLVNGTFLAGCGVTLGLISIFWTWGIARAARRWKRRST--DLDQACASMGNRLKAAVLINLMGMLVALVGAEQIVGTLVAKILQTQTVQQFGMSQVIQAGGSGI-------FQALDIFVVQANTNTILAHFSSLAASLWLQTRFRRLS 262
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BLAST of mRNA_D-dichotoma_M_contig948.20198.1 vs. uniprot
Match: A0A7S3XU47_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU47_HETAK)

HSP 1 Score: 143 bits (361), Expect = 4.400e-34
Identity = 85/194 (43.81%), Postives = 117/194 (60.31%), Query Frame = 1 
Query:  658 KRVKRSAIVFRQVSWLSWWAQTILSMVAFIILLFSNAVTNRAARGNILGNGVALALSSLFASGASICWTWGYTLKARGWPRLGTLTEVDDAQLRMRNSLKMGLYINVIGMLLALVGAEQIVGTLVAKVLYSQGFQPSVMVGGVGTAE-----VAQAQFRALDVFIVQANTNTLLSHFCSLAATLWLLQRTPKLA 1224
            KR++  +  F+  +W SWWAQ ILS VA +IL F++A+T+   R N+  NG  LA   +F    S  WTWGY   A+ W R G   +++  Q  M   L+ G ++N +GM +AL GAEQIVGTLVAKVL +QG  P +    VG A      + Q   +ALD+F+VQANTN+++SH C L   L+L  R  +LA
Sbjct:   96 KRIRNLSNGFQNAAWTSWWAQVILSTVAGVILFFASAITDP--RVNMFMNGTLLAGCGVFFGLVSTFWTWGYASAAKRWKRPGA--DLEKLQRAMLRRLEFGHFVNTLGMAVALTGAEQIVGTLVAKVLSAQGLSPFLGGAAVGYAAGQPLVLPQGAVQALDIFVVQANTNSVVSHLCGLLTVLYLRGRARRLA 285
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BLAST of mRNA_D-dichotoma_M_contig948.20198.1 vs. uniprot
Match: A0A6U1BPE4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1BPE4_9STRA)

HSP 1 Score: 130 bits (327), Expect = 3.240e-30
Identity = 89/203 (43.84%), Postives = 123/203 (60.59%), Query Frame = 1 
Query:  637 TLDRSVAKRVK--RSAIVFRQVSWLSWWAQTILSMVAFIILLFSNAVTNRAARG-NILGNGVALALSSLFASGASICWTWGYTLKARGWPRLGT---LTEVDDAQL--RMRNSLKMGLYINVIGMLLALVGAEQIVGTLVAKVLYSQGFQPSVMVGGVGTAEVAQAQFRALDVFIVQANTNTLLSHFCSLAATLWLLQRTPKL 1221
            T  ++V+ RVK  R A++  + S +SWW Q +LS+V  + L F+NAV    A   NI+ NG+AL+++ L  +  S+ WT GYT       R  T   L +VD   L  R+   L+ G+ +N+IG LLALV AEQIVG L+++VL +QG Q   +V  VG A   Q     LD+F+VQANTN L +HF SLA  LW+L+R P L
Sbjct:   72 TTAKAVSDRVKTRRLALLLWRFSVVSWWPQVVLSVVGGVTLTFANAVKETGAGSRNIVVNGLALSMAGLLFNFLSLVWTSGYT-------RFATRIRLRKVDTTGLNDRVAGRLRTGVVLNLIGALLALVSAEQIVGLLISRVLSTQGLQSLGVVSPVGFASAIQP----LDIFVVQANTNVLFAHFLSLAGNLWMLRRLPGL 263
[Close]
BLAST of mRNA_D-dichotoma_M_contig948.20198.1 vs. uniprot
Match: A0A4D9D048_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D048_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.010e-28
Identity = 76/187 (40.64%), Postives = 108/187 (57.75%), Query Frame = 1 
Query:  697 SWLSWWAQTILSMVAFIILLFSNAVTNRAARG------NILGNGVALALSSLFASGASICWTWGYTLKARGWPRLGTLTEVDDAQLRMRNSLKMGLYINVIGMLLALVGAEQIVGTLVAKVLYSQGFQPSVMVGGVGTAEVAQAQFRALDVFIVQANTNTLLSHFCSLAATLWLLQRTPKLARLARG 1239
            +W SWWAQ I + VA +IL F+N+    +  G      +I  NG   A S L     SI WTWG+T  A+   R   + E   +   +R  ++  + IN++G+L AL+GAEQ VG L+A+VL  QGF P V+        +A    + +D+F++QANTN LLSHF SL ++L LL R  K++R ARG
Sbjct:  105 AWFSWWAQVICNTVAGVILFFTNSFVAPSGGGPSLAAKSIFSNGYIFAASGLCLGAISIFWTWGFTGVAKRIRR--AVLEPPTSLAMVRRVVRTAIVINLLGLLTALIGAEQFVGNLMARVLSQQGFSPLVINQSAMGGAIASPTVQPVDIFVIQANTNILLSHFISLVSSLLLLLRYSKISRAARG 289
[Close]
BLAST of mRNA_D-dichotoma_M_contig948.20198.1 vs. uniprot
Match: A0A7S1XJJ2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJJ2_9STRA)

HSP 1 Score: 123 bits (309), Expect = 3.070e-28
Identity = 81/175 (46.29%), Postives = 105/175 (60.00%), Query Frame = 1 
Query:  691 QVSWLSWWAQTILSMVAFIILLFSNAVTNRAARGNILGNGVA----LALSSLFASGASICWTWGYTLKARGWPRLGTLTEVDDAQLRMRNSLKMGLYINVIGMLLALVGAEQIVGTLVAKVLYSQGFQPSVMVGGVGTAEVAQ-AQFRALDVFIVQANTNTLLSHFCSLAATLWL 1200
            +  W SWW QT+L+++A I LLF+      A     + +G A    LA   +  S  S+ WTWG+T  AR   +   LT   +A+L +R +L+ G+ +N++GM   L GAEQIVGTLVAKVL  QG     + G    A VA  A  +ALD+FIVQANTNTLLSH CSL  TLWL
Sbjct:   28 RAGWTSWWIQTVLTVIASITLLFARTFAAAAGGSTAIQSGGAGGLFLAGLGVSLSALSVFWTWGFTRVARRLRKGEDLTPRLEARL-IRRALRTGIVLNLVGMFATLFGAEQIVGTLVAKVLSFQG-----VTGPAAGAYVAPTATLQALDIFIVQANTNTLLSHLCSLTITLWL 196
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BLAST of mRNA_D-dichotoma_M_contig948.20198.1 vs. uniprot
Match: A0A7S2IJ58_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IJ58_9STRA)

HSP 1 Score: 120 bits (301), Expect = 3.350e-26
Identity = 76/186 (40.86%), Postives = 109/186 (58.60%), Query Frame = 1 
Query:  664 VKRSAIVFRQVSWLSWWAQTILSMVAFIILLFSNAVTNRAARGNILGNGVALALSSLFASGASICWTWGYTLKARGWPRLGTLTEVDDAQLRMRNSLKMGLYINVIGMLLALVGAEQIVGTLVAKVLYSQGFQPSVMVGGVGTAEVAQAQFRALDVFIVQANTNTLLSHFCSLAATLWLLQRTPKL 1221
            ++ +A+  R++SW SWW Q IL+ V+ I LLF+  V N    G  LG G+ LA S +  S  SI WTWG    AR   R    T +  A +  R ++ + + IN+IGM + ++GAEQIVG+L A++L + G  P        ++++A    + LDV +VQANTNTLLSHF SLA  L L +   +L
Sbjct:  127 IRETALGLRRLSWFSWWCQVILTTVSSITLLFAKNVRNSGGTGGGLG-GLFLAASGITLSILSIFWTWGGARLARRLVRRAQTTRISAANMT-RRAVSIAVAINLIGMFVTILGAEQIVGSLAARILSTSGLSPFAP----PSSQMAAQTIQPLDVLVVQANTNTLLSHFVSLACALSLKRFISRL 306
[Close]
BLAST of mRNA_D-dichotoma_M_contig948.20198.1 vs. uniprot
Match: A0A0M0JU81_9EUKA (Copper uptake transmembrane transporter n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JU81_9EUKA)

HSP 1 Score: 114 bits (286), Expect = 1.580e-25
Identity = 76/169 (44.97%), Postives = 98/169 (57.99%), Query Frame = 1 
Query:  694 VSWLSWWAQTILSMVAFIILLFSNAVTNRAARGNILGNGVALALSSLFASGASICWTWGYTLKARGWPRLGTLTE--VDDAQLRMRNSLKMGLYINVIGMLLALVGAEQIVGTLVAKVLYSQGFQPSVMVGGVGTAEVAQAQFRALDVFIVQANTNTLLSHFCSLAATL 1194
            + W+SWW+Q ILS ++ ++LLF+N VT R     ILG   AL L  L A+ AS  WT  Y   AR   RLG  T    +DA  R  N   +G ++N++GM+L L+GAE IVGTL AK L S         G   T     +  +ALD+ IVQANTNTLL+HF SL A +
Sbjct:   20 IGWVSWWSQAILSTISAVLLLFANTVTVRPTALTILGR--ALTLGGLVAAIASTLWTVAYGRLAR---RLGRATPPTAEDAAERAANIATVGTWLNIVGMVLCLLGAEAIVGTLAAKALQSTS-------GTAITGSFIPSPVQALDLLIVQANTNTLLAHFISLCANM 176
[Close]
BLAST of mRNA_D-dichotoma_M_contig948.20198.1 vs. uniprot
Match: A0A7S0ITD5_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0ITD5_9EUKA)

HSP 1 Score: 114 bits (286), Expect = 3.760e-25
Identity = 73/166 (43.98%), Postives = 105/166 (63.25%), Query Frame = 1 
Query:  700 WLSWWAQTILSMVAFIILLFSNAVTNRAARGNILGNGVALALSSLFASGASICWTWGYTLKARGWPRLGT-LTEVDDAQLRMRNSLKMGLYINVIGMLLALVGAEQIVGTLVAKVLYSQGFQPSVMVGGVGTAEVAQAQFRALDVFIVQANTNTLLSHFCSLAATL 1194
            WLSWW QTILS++A +ILLF N+V+ ++     L  G +LA  +L  S  S  WTWGYT  ++   RLG  L    DA  R+  SL++G+ +N++G+  A++GAE IVGTL AK   +QG    + +GGV +        +A+DV +VQANTNTL +HF +L A++
Sbjct:   58 WLSWWTQTILSVIAAVILLFVNSVSQQSLNLPALA-GRSLAFVALAGSVVSNFWTWGYTRLSK---RLGRKLPTAADAAARVSGSLRVGVVVNLLGICFAILGAEAIVGTLAAKAFTTQG---QLALGGVASP------VQAIDVLVVQANTNTLAAHFAALIASM 210
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig948.20198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJB7_9PHAE1.370e-10482.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CL61_9STRA4.340e-4650.48Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V450_9STRA4.340e-3746.91Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3XU47_HETAK4.400e-3443.81Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A6U1BPE4_9STRA3.240e-3043.84Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9D048_9STRA1.010e-2840.64Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A7S1XJJ2_9STRA3.070e-2846.29Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2IJ58_9STRA3.350e-2640.86Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A0M0JU81_9EUKA1.580e-2544.97Copper uptake transmembrane transporter n=1 Tax=Ch... [more]
A0A7S0ITD5_9EUKA3.760e-2543.98Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig948contigD-dichotoma_M_contig948:123812..129298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue3.7e-23
Seed eggNOG ortholog2850.Phatr49226
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006605,GO:0006810,GO:0006873,GO:0006875,GO:0006886,GO:0008104,GO:0008150,GO:0009507,GO:0009526,GO:0009528,GO:0009536,GO:0009706,GO:0009941,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0017038,GO:0019725,GO:0019866,GO:0030003,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0033036,GO:0033365,GO:0034613,GO:0042170,GO:0042592,GO:0042802,GO:0042803,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045036,GO:0045037,GO:0045184,GO:0046907,GO:0046983,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055065,GO:0055080,GO:0055082,GO:0055085,GO:0065002,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0072594,GO:0072596,GO:0072598,GO:0098771
EggNOG free text desc.Protein of unknown function (DUF3611)
EggNOG OGs28KUA@1,2QTAI@2759,2XGTY@2836
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionChloroplast inner membrane protein TIC 21
Ec32 orthologEc-12_006410.1
Exons5
Model size2306
Cds size1047
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931197.8449132-UTR-D-dichotoma_M_contig948:123811..1248691622931197.8449132-UTR-D-dichotoma_M_contig948:123811..124869Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig948 123812..124869 -
1690799660.6517663-UTR-D-dichotoma_M_contig948:123811..1248691690799660.6517663-UTR-D-dichotoma_M_contig948:123811..124869Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig948 123812..124869 -
1622931197.9623895-UTR-D-dichotoma_M_contig948:129097..1292981622931197.9623895-UTR-D-dichotoma_M_contig948:129097..129298Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig948 129098..129298 -
1690799660.7141597-UTR-D-dichotoma_M_contig948:129097..1292981690799660.7141597-UTR-D-dichotoma_M_contig948:129097..129298Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig948 129098..129298 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931197.873938-CDS-D-dichotoma_M_contig948:124869..1250631622931197.873938-CDS-D-dichotoma_M_contig948:124869..125063Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig948 124870..125063 -
1690799660.6616876-CDS-D-dichotoma_M_contig948:124869..1250631690799660.6616876-CDS-D-dichotoma_M_contig948:124869..125063Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig948 124870..125063 -
1622931197.8885753-CDS-D-dichotoma_M_contig948:125522..1257161622931197.8885753-CDS-D-dichotoma_M_contig948:125522..125716Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig948 125523..125716 -
1690799660.6696334-CDS-D-dichotoma_M_contig948:125522..1257161690799660.6696334-CDS-D-dichotoma_M_contig948:125522..125716Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig948 125523..125716 -
1622931197.9059908-CDS-D-dichotoma_M_contig948:126023..1261901622931197.9059908-CDS-D-dichotoma_M_contig948:126023..126190Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig948 126024..126190 -
1690799660.6801157-CDS-D-dichotoma_M_contig948:126023..1261901690799660.6801157-CDS-D-dichotoma_M_contig948:126023..126190Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig948 126024..126190 -
1622931197.92314-CDS-D-dichotoma_M_contig948:126661..1267071622931197.92314-CDS-D-dichotoma_M_contig948:126661..126707Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig948 126662..126707 -
1690799660.6909204-CDS-D-dichotoma_M_contig948:126661..1267071690799660.6909204-CDS-D-dichotoma_M_contig948:126661..126707Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig948 126662..126707 -
1622931197.9413767-CDS-D-dichotoma_M_contig948:128651..1290971622931197.9413767-CDS-D-dichotoma_M_contig948:128651..129097Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig948 128652..129097 -
1690799660.703176-CDS-D-dichotoma_M_contig948:128651..1290971690799660.703176-CDS-D-dichotoma_M_contig948:128651..129097Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig948 128652..129097 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig948.20198.1prot_D-dichotoma_M_contig948.20198.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig948 124870..129097 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig948.20198.1

>prot_D-dichotoma_M_contig948.20198.1 ID=prot_D-dichotoma_M_contig948.20198.1|Name=mRNA_D-dichotoma_M_contig948.20198.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=349bp
MRALPPRGSVTWVGAAVVVLSNCWVHAFIIPFPRSPLPSLHDTSATRENS
VVALSTRCGESHSTAMVLGSYPTQRQPRRQFRPTLGVANKLQSLASIGRR
SLGTTIMCRVARRSSERYDDEGREEEPEEEGDEEYEYDEGEEYEDTLDRS
VAKRVKRSAIVFRQVSWLSWWAQTILSMVAFIILLFSNAVTNRAARGNIL
GNGVALALSSLFASGASICWTWGYTLKARGWPRLGTLTEVDDAQLRMRNS
LKMGLYINVIGMLLALVGAEQIVGTLVAKVLYSQGFQPSVMVGGVGTAEV
AQAQFRALDVFIVQANTNTLLSHFCSLAATLWLLQRTPKLARLARGIY*
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mRNA from alignment at D-dichotoma_M_contig948:123812..129298-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig948.20198.1 ID=mRNA_D-dichotoma_M_contig948.20198.1|Name=mRNA_D-dichotoma_M_contig948.20198.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=5487bp|location=Sequence derived from alignment at D-dichotoma_M_contig948:123812..129298- (Dictyota dichotoma ODC1387m male)
CGTGTTCGTGTTGAGGAGCATCTTGTGCTCTTCCTTGAGAAGACGAGCGA
GTGCTATCGTGGATAGAAAAATATTTTCCTTCTCTGCGCTTTGAGTTGAG
TCATAGACATCTCTAAAGCTGTGGTGTATACTCGATTGCTTCTCTTTGAT
CGTCTTCCGCTCCTTTCCTTCCAAGCAAACTTGAACCTTGCTGATCGAAT
CATGCGTGCTTTACCACCCAGGGGCAGTGTCACATGGGTGGGAGCGGCAG
TAGTTGTCTTGTCGAACTGCTGGGTCCATGCTTTCATCATTCCATTTCCT
CGGTCACCTCTTCCATCTCTTCATGATACAAGTGCTACGCGAGAAAATTC
TGTTGTGGCATTGTCAACTCGCTGTGGAGAGTCGCACTCGACAGCGATGG
TGCTCGGCTCGTACCCAACGCAGCGGCAGCCCCGACGGCAGTTCCGACCA
ACGCTAGGAGTGGCGAACAAACTTCAGAGCCTGGCGAGCATTGGAAGGCG
GTCACTTGGCACCACGATCATGTGCCGTGTGGCGCGAAGGAGTAGTGAGC
GATACGATGACGAGGGGCGCGAGGAAGAGCCAGAAGAGGAGGGTGACGAG
GAATACGAATACGATGAAGGCGAGGAGTACGAGGACACTTTAGACAGGTA
TTCCTCTACAAAGTGTCTCGTGTGAGCTCTTGCGAGCCTTCTCGTGTATG
ACGGCTTTGCTGCATGTGATAACTATCTCAATCGGCGTCAGTAAGATGCG
TTTTCAAATGCCAAAAGGCGTCGGCGCTAGTTGGTCTCTCCGTACCACGG
TGGCCTCGTGCTTTCTCGGCTTCGATGCTCCCAGAGACGGTTCTGAATTT
GAGGCCGACGTCCAACAGAGGTACAGTATTTTGAACTCTCACGCTAGGCC
TCTGCTGGAATGGATCCGCGAGTGCGTAGACTGAAACACAAATCAGTCGA
TTGGCTCTCATGGGTTGAGATCGTACCACATCTCTTCTGTCTTTCGTCTC
ACGGTACACTGAAACATAACCCCCTAGTGGGCTTGGAAAGTACTCCCCAT
CATGACTGCATCTGGTGGATGGATGTCCTCAAGTTACCGGCGAGGCGAAG
GCTTGGGCGGCGCCACCAGGTGGATGTTTGGCGTGCTGTTGTTGATCTCT
CCTCACGGAGGGACCACTCAGAAATCCAGGTTTCTTCAAGAGTTGCTCGG
TAATTTTGTGAAGTTCTCGAGACGACCAGCTCTTGAGACTTTAGTTGTTC
ACGTTAGGTTAAATCGAATCACGCGGTAAGCCCGCCACATGGTAGAACGG
GAGGTGTATCAGTGTGGTATCCCTAGAAGCTCACAGGATGGGCAGTGCCC
CACAGGCCCAGATCCACAGGTGTATCACATGCTATTGTAGAGATTCTTCA
AAGTCGGAGATCACGCTTCACTGGGGTCCGTGCCCTTCGGTTTCTTGCCT
TTCCAGCGCTCCCTTCCTCTGCGCCGTGCGTGTCGTAGCTGGTACCCTGC
TGCTCCATTCTCCGGTCCATTCCCAGCGCGATCCTCTACCCCGTTATGCA
TTCCAATATATCCGTGGTCGCTCGCTTACCTCAAGCCTTAAGAGCATTCC
TTAAGAGTTTCGACTAGCAGTACGCAGAAGGGTCGCCGTTGCCATGGACC
AGATGGTTCGAGGCCTTAAAGCGTGAGACCCTTATCCTGGTCACAAGGGG
GGGGGGGGCGCACTGGAAATCATCCCCTGGTCCAGGAATCAAGTCCCAGG
GTTCCCGTATTCCAAGGCTGTTATCGAGGCCTTGAAGCATGAGATTCTTA
TTCTGGTCACAAGGGGGGGGGGGACTGGAAATCGTCCCCTGGTCCAGGAA
TCAAGTCCCAGGGTTCCCGTGGTTCCAGGCTGTTATCTCGAGCTTTGGCT
TCGACAGCGGAGCAGGCGGAAAAGTCGCAAGATTCCTTTAGCCGCTCGCT
TCGCTGATTTTCCTGTGACTCAAATCGTATCGAAATGGCTCTTGAGCGCA
TTTACAGGGGATCATTACGTACGTACGTAACCAAGGATCCATTTTGTTGC
GATTGGAAGTATCGTATAGGGTACAGGGTGCAAATCGTAATCGACTGAAT
TTCCGAGTGTTAACCCTTAAGACGCCTAGTGGAACCGGAGTTGGGTTTAT
AAGAATTGTCTCCCCGTTAACCAAACCGATTATTTGACTCAAACATCCAC
GAGTAAGACGCTCCCAGATGAAGTACATCGATTTTTCTTGCATGCTCTTA
ATGGAATATTATCTATTACATAATACGTCTTTATCTTGCCTGACATTTCC
TCCGGGGTTCGGGCAGTAAGGACTAACGTAACGTAACGTAACGTAACATA
ACCTAACCCGAGCCTCTAAAGAGTTAATAGTTCAATACTAGATGCAATTC
ATTTCGTCGACGGTTAATTTTGTTACGGTTTGAACCACTACGTTGTGCCG
CCGGTGGACGTTGTTGCCAATTGCGGGGCATGATAGGCGCGTTTCCGCCG
AGACGACCTGGGCGAGCGACGTGGAAGCCCCCGTTGCCGAGTCCGACAGT
CACCTTGATTTATTTCCTTCACGTCTTCCCTTTCTCTGCAGGAGCGTGGC
GAAGAGGGTAAAGCGAAGCGCAATCGTTTTCCGACAGGTGAGACAGGAAG
GACCTGTTGAGTCTCGTGCTCGGGCATCATCACCCTCTGAAGACGACCGT
ATGCCGGACGTTTTTAGGCGCGACGTCGATCTTGGTTGTTGAGCTCTTTT
GAGCTCAAGAGCTGCTAAGGCCCACGATTATTTCGCTACGCCTCTTCCGC
TTGTGCCGTTGTCCACGCCTTATTCTCGGGGATGGGTGATCCCTACCCTA
GCCTTGTTGCGTTTTTGGTGCAGAAAGAACGACCCCACGTAACGTCCCTC
TGTTCTACACATGTCCCCACTCGTTAAGGGATGAGTTCCTTCCCCGAATG
CTGCTTTCGACGCAGCGTCGACATTAGGGAGGACTCCGGCAATGCACAGC
TTCCGGGTTTGCGCGGAAGTTGGTGGCGAATCGCCGGAACCCCAGTTCTA
TCCAGTTGTGTGATGCGTTGCGTTTTTTCACTGTAGTCTTGTGCTTACTG
GACCTCAGGTGAGCTGGTTGTCGTGGTGGGCGCAGACGATCCTGTCGATG
GTGGCCTTCATCATCTTGCTCTTCTCCAACGCTGTCACGAACCGCGCGGC
TCGGGGCAACATTCTGGGCAACGGCGTGGCCCTAGCGCTATCGAGCCTTT
TTGCCTCGGGTGCAAGTATCTGCTGGTGAGTTAATCCGGCGCTGTCCTGC
GATTTCGCCCGGGTGGTACACTCAAACTCGAGATAATGGTGCATCAACAT
CGGGAAACAGTCTCATATGCACGGTTGATGTGCGGTCAAACCACGCTCCT
ACCCACGGGAGATTTGAGTGATCCCTAACTTTCCCACGGTAAGTGTTTAA
ATCGAGGGTCGTTTTGTGCATGTTTCCTGTTGCGCATTGCTTTCCTTTGG
TGGAATACACCGGGCGTACGTTTCGCGACTAAAGAACCGGCCGTGCTCGG
CTCGGCCGCTTGCTTCTACCTTGCCGGAGAAGGACGTGGGGGTACACCCT
GAAGGCCAGAGGGTGGCCTAGACTGGGGACGCTCACTGAGGTGGATGATG
CGCAGCTTCGGATGCGTAATTCTCTCAAGATGGGGTTGTACATCAATGTC
ATCGGGATGTTGCTTGCGTTGGTTGGGGCGGAGCAAATCGTGGGCACCCT
TGTGGCCAAGGTTTTGTACTCTCAGGGTGAGTGAAGGACCTGTAGCATCC
TGTCGTCTGGTCGTCAGAGCTGCAGGAAGATCTACGCTATATGTTGTTCC
TGTTTAATGCGACGGTAGTGGTTGCATCGCCGGATGGCGTCTTGCGCTTT
GGTCGAGACGCAGTTGACCTGTGGGTTGGTCGCGGAAATGATGTCTAGTG
TCGTACGCTGAGTTCGTTCATCCTGGGTAGGATGGTTGGTCTCGACTCAT
CTATTCGCATCTATTCGCGTCACTCTTACAGGCCAATTGGGTTCTGAATC
AGTGTACGTATGCAATGCAGATGTCACGCCCTGGGGAGCGTTTCGGTGTC
AGGGATTTCTTCTGCAGTCCAGTTCCAGGGTGTTTCCGCGTGTGATCGAT
CTTTCCTACCGTCGCATTCTTCCATACATTCGACACCCCCCGAAACACGT
TTTGTCGGTACGGTTTCATGTCGACGCCGCTCAAGGTTTCCAACCGTCGG
TAATGGTGGGGGGTGTGGGGACGGCCGAGGTGGCGCAAGCACAGTTTCGG
GCCCTTGACGTCTTCATCGTGCAGGCCAACACCAACACCCTTCTGAGCCA
CTTCTGCTCGCTTGCGGCAACTCTATGGCTTCTGCAAAGGACACCTAAGC
TCGCAAGGCTTGCGAGAGGCATCTATTGACTCGCTTTTTCGCGATGCAAT
AGGGAGAGGAGCTCCACGGTTTTGACCCTACAGGGAGTTCTGCGTTCATG
GTGTTTTGGTGGTGGTTCGAGACTCATGTGGTGCCGTAGAGTCCAGGCCG
TTCGTAACTGTCAACTTTCTCGTCTCAGACTGTTTTGGGACTCTGGCAAT
GGGTGCAGATTATCCCTGGCTATCTGGAAGGTGTGATGCAATTACGATGG
AGTCGACTCGTGTGCATGATTGGAGGCCTCCCATGTGAAGCCCGTGTTCG
ATGAGGCAGCCTTTAGGGAGTCATTGCTCCTGACGGTCACCGGGCGTTGG
ACGGGAATTTTGACCATTGCTTGGAGAGCCCTGAGAATGGCTAGGCCCTG
TGCAGGAATTTCATACAAGAGGCGGTTTCCCTTGATATTGCTTTTGACAC
ACGAGTTACGTTGCCGAAGGTGTGTAGCTCTAACACCGTCGGTCACCGGG
ATAGTCAAGTGTGCTTTACGATCAAGTCTTGGAACCAAGATGCCACAAGA
ACACAAGGTTTTGCAGAGATACCTCGTGAGAGGTTCGGAGTTGGGAATTT
ACGAACGGCAGCGGGGACCCAGGTGGGCGGTCGTGTTCCAGCCCTTTCAC
GCTTCGAACCGTGCGATGACACTCGTGTTGTGAGTGGCTGGCAACCTCTG
GCGCAGCACCACCTCCCTCCCTGCCTTGCGAGTTGCGCGTGTCAAGTCAG
CATCTAGTTTGGTTAGGTCGCCACTGCTGGGCACGTCAGATCTGCGTTAG
GCGGTGATAAATCCTTTTTGGTCATTGTTTACTAAGCCTGGTTAAGGCGA
TGATCCTGTTACGGTTGTTATTGTTGCTGTTGCTGTGGGGATAGTCGCTC
CACTGCTCTAAAGGCGAGGAGCCTCAGAGGCAGAGAACGCTCAGCGGCAA
GACATAGGCGCAAAATCAGAAAATATTTGAAAAAAGGGAAGACTCTCAGA
GGCTTCTGTGCCGTCGTCGTGCGGTACGATGCGGTTTTGTATCCATTTCT
GCCTTGCGGATCATCTCGGGTTGGCTCGGAGACGGGG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig948:123812..129298-

>mRNA_D-dichotoma_M_contig948.20198.1 ID=mRNA_D-dichotoma_M_contig948.20198.1|Name=mRNA_D-dichotoma_M_contig948.20198.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=2094bp|location=Sequence derived from alignment at D-dichotoma_M_contig948:123812..129298- (Dictyota dichotoma ODC1387m male)
ATGCGTGCTTTACCACCCAGGGGCAGTGTCACATGGGTGGGAGCGGCAGT
AGTTGTCTTGTCGAACTGCTGGGTCCATGCTTTCATCATTCCATTTCCTC
GGTCACCTCTTCCATCTCTTCATGATACAAGTGCTACGCGAGAAAATTCT
GTTGTGGCATTGTCAACTCGCTGTGGAGAGTCGCACTCGACAGCGATGGT
GCTCGGCTCGTACCCAACGCAGCGGCAGCCCCGACGGCAGTTCCGACCAA
CGCTAGGAGTGGCGAACAAACTTCAGAGCCTGGCGAGCATTGGAAGGCGG
TCACTTGGCACCACGATCATGTGCCGTGTGGCGCGAAGGAGTAGTGAGCG
ATACGATGACGAGGGGCGCGAGGAAGAGCCAGAAGAGGAGGGTGACGAGG
AATACGAATACGATGAAGGCGAGGAGTACGAGGACACTTTAGACAGATGC
GTGCTTTACCACCCAGGGGCAGTGTCACATGGGTGGGAGCGGCAGTAGTT
GTCTTGTCGAACTGCTGGGTCCATGCTTTCATCATTCCATTTCCTCGGTC
ACCTCTTCCATCTCTTCATGATACAAGTGCTACGCGAGAAAATTCTGTTG
TGGCATTGTCAACTCGCTGTGGAGAGTCGCACTCGACAGCGATGGTGCTC
GGCTCGTACCCAACGCAGCGGCAGCCCCGACGGCAGTTCCGACCAACGCT
AGGAGTGGCGAACAAACTTCAGAGCCTGGCGAGCATTGGAAGGCGGTCAC
TTGGCACCACGATCATGTGCCGTGTGGCGCGAAGGAGTAGTGAGCGATAC
GATGACGAGGGGCGCGAGGAAGAGCCAGAAGAGGAGGGTGACGAGGAATA
CGAATACGATGAAGGCGAGGAGTACGAGGACACTTTAGACAGGAGCGTGG
CGAAGAGGGTAAAGCGAAGCGCAATCGTTTTCCGACAGGAGCGTGGCGAA
GAGGGTAAAGCGAAGCGCAATCGTTTTCCGACAGGTGAGCTGGTTGTCGT
GGTGGGCGCAGACGATCCTGTCGATGGTGGCCTTCATCATCTTGCTCTTC
TCCAACGCTGTCACGAACCGCGCGGCTCGGGGCAACATTCTGGGCAACGG
CGTGGCCCTAGCGCTATCGAGCCTTTTTGCCTCGGGTGCAAGTATCTGCT
GGTGAGCTGGTTGTCGTGGTGGGCGCAGACGATCCTGTCGATGGTGGCCT
TCATCATCTTGCTCTTCTCCAACGCTGTCACGAACCGCGCGGCTCGGGGC
AACATTCTGGGCAACGGCGTGGCCCTAGCGCTATCGAGCCTTTTTGCCTC
GGGTGCAAGTATCTGCTGGACGTGGGGGTACACCCTGAAGGCCAGAGGGT
GGCCTAGACTGGGGACGCTCACTGAGGTGGATGATGCGCAGCTTCGGATG
CGTAATTCTCTCAAGATGGGGTTGTACATCAATGTCATCGGGATGTTGCT
TGCGTTGGTTGGGGCGGAGCAAATCGTGGGCACCCTTGTGGCCAAGGTTT
TGTACTCTCAGGGACGTGGGGGTACACCCTGAAGGCCAGAGGGTGGCCTA
GACTGGGGACGCTCACTGAGGTGGATGATGCGCAGCTTCGGATGCGTAAT
TCTCTCAAGATGGGGTTGTACATCAATGTCATCGGGATGTTGCTTGCGTT
GGTTGGGGCGGAGCAAATCGTGGGCACCCTTGTGGCCAAGGTTTTGTACT
CTCAGGGTTTCCAACCGTCGGTAATGGTGGGGGGTGTGGGGACGGCCGAG
GTGGCGCAAGCACAGTTTCGGGCCCTTGACGTCTTCATCGTGCAGGCCAA
CACCAACACCCTTCTGAGCCACTTCTGCTCGCTTGCGGCAACTCTATGGC
TTCTGCAAAGGACACCTAAGCTCGCAAGGCTTGCGAGAGGCATCTATTGA
GTTTCCAACCGTCGGTAATGGTGGGGGGTGTGGGGACGGCCGAGGTGGCG
CAAGCACAGTTTCGGGCCCTTGACGTCTTCATCGTGCAGGCCAACACCAA
CACCCTTCTGAGCCACTTCTGCTCGCTTGCGGCAACTCTATGGCTTCTGC
AAAGGACACCTAAGCTCGCAAGGCTTGCGAGAGGCATCTATTGA
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