mRNA_D-dichotoma_M_contig943.20158.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig943.20158.1
Unique NamemRNA_D-dichotoma_M_contig943.20158.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig943.20158.1 vs. uniprot
Match: A0A6H5KT20_9PHAE (FtsJ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT20_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.890e-22
Identity = 49/62 (79.03%), Postives = 56/62 (90.32%), Query Frame = 1 
Query:   91 VDGIGSGLLARGGTFLGKFLAGRDERELKEEAGQLFQKVRVVKPPASRSSSSEMYLLATGFL 276
            ++G G GLLARGGTFLGKF AGRDERE+KEEA +LF++V+VVKPPASRS S EMYLLATGFL
Sbjct:  473 IEGEGPGLLARGGTFLGKFFAGRDEREVKEEAERLFERVKVVKPPASRSGSGEMYLLATGFL 534
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BLAST of mRNA_D-dichotoma_M_contig943.20158.1 vs. uniprot
Match: A0A6L7XH06_9PROT (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A6L7XH06_9PROT)

HSP 1 Score: 73.9 bits (180), Expect = 5.670e-14
Identity = 48/91 (52.75%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:    4 ASVVLSDMAPSFSGDRDMDQGR-LDEDPAIVDGIGSGLLARGGTFLGKFLAGRDERELKEEAGQLFQKVRVVKPPASRSSSSEMYLLATGF 273
            A  VLSDMAP  +G R  DQ R L    A VD   + LLA GGT L K + G+ E +L    G  F +VR  KPPASRS SSEM+LLA+GF
Sbjct:  135 ADAVLSDMAPPATGHRSTDQLRSLALAEAAVD-CAAALLAPGGTLLVKLIRGQGEEDLVRALGDTFAEVRREKPPASRSDSSEMFLLASGF 224
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BLAST of mRNA_D-dichotoma_M_contig943.20158.1 vs. uniprot
Match: A0A0D0PZK0_9RHOB (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Wenxinia marina DSM 24838 TaxID=1123501 RepID=A0A0D0PZK0_9RHOB)

HSP 1 Score: 73.2 bits (178), Expect = 1.350e-13
Identity = 44/91 (48.35%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:    1 RASVVLSDMAPSFSGDRDMDQGRLDEDPAIVDGIGSGLLARGGTFLGKFLAGRDERELKEEAGQLFQKVRVVKPPASRSSSSEMYLLATGF 273
            +A VV+SDMA S SG +  D  R+         +   +LA GGTF+ K LAG  E EL++   Q F KV  VKPPASR+ SSE ++LATGF
Sbjct:  145 QADVVMSDMAASSSGHKQTDHIRIIALCEAAAELAFDVLAPGGTFVAKVLAGGAEGELQKRLKQAFTKVENVKPPASRADSSEKFVLATGF 235
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BLAST of mRNA_D-dichotoma_M_contig943.20158.1 vs. uniprot
Match: A0A0L0FC24_9EUKA (Ribosomal RNA large subunit methyltransferase J (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FC24_9EUKA)

HSP 1 Score: 70.1 bits (170), Expect = 3.050e-13
Identity = 43/93 (46.24%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:    1 RASVVLSDMAPSFSGDRDMDQGRLDEDPAIVDGIGSGLLARGGTFLGKFLAGRDERELKEEAGQLFQKVRVVKPPASRSSSSEMYLLATGFLE 279
            RA VVLSDMAP  SG   +D  RL      V     G L  GGT + K L G D ++ +    Q FQ V+  KP ASRSSSSE +++ATGF +
Sbjct:   31 RADVVLSDMAPPASGQPSVDFDRLMNLCDAVLNFTKGNLKPGGTLVVKLLGGGDIKDFRTSLTQTFQSVKFAKPAASRSSSSESFVVATGFTQ 123
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BLAST of mRNA_D-dichotoma_M_contig943.20158.1 vs. uniprot
Match: A0A4Q3Y9A2_9RHOB (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Loktanella sp. IMCC34160 TaxID=2510646 RepID=A0A4Q3Y9A2_9RHOB)

HSP 1 Score: 71.6 bits (174), Expect = 4.810e-13
Identity = 44/90 (48.89%), Postives = 56/90 (62.22%), Query Frame = 1 
Query:    4 ASVVLSDMAPSFSGDRDMDQGRLDEDPAIVDGIGSGLLARGGTFLGKFLAGRDERELKEEAGQLFQKVRVVKPPASRSSSSEMYLLATGF 273
            A VV+SDMA S SG +  D  R+         +   +LA GGTF+ K LAG  E EL++   Q F+KV  VKPPASRS SSE +++ATGF
Sbjct:  147 ADVVMSDMAASSSGHKQTDHLRIIALCEAAAYLAFDVLAPGGTFVAKVLAGGAEGELQKLLKQRFEKVANVKPPASRSDSSEKFVVATGF 236
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BLAST of mRNA_D-dichotoma_M_contig943.20158.1 vs. uniprot
Match: UPI000F8D4DB7 (RlmE family RNA methyltransferase n=1 Tax=Pararhodobacter zhoushanensis TaxID=2479545 RepID=UPI000F8D4DB7)

HSP 1 Score: 70.9 bits (172), Expect = 1.120e-12
Identity = 44/91 (48.35%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:    1 RASVVLSDMAPSFSGDRDMDQGRLDEDPAIVDGIGSGLLARGGTFLGKFLAGRDERELKEEAGQLFQKVRVVKPPASRSSSSEMYLLATGF 273
            +A VV+SDMA S SG +  D  R+             +LA GGTF+ K LAG  E EL++   Q F KV  VKPPASR+ SSE Y++ATGF
Sbjct:  155 QADVVMSDMAASASGHKQTDHNRIMALCEHAAYFAFDVLAPGGTFVAKVLAGGAEGELQQLLKQRFTKVVNVKPPASRADSSEKYVVATGF 245
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BLAST of mRNA_D-dichotoma_M_contig943.20158.1 vs. uniprot
Match: A0A1H8PV46_9RHOB (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Salinihabitans flavidus TaxID=569882 RepID=A0A1H8PV46_9RHOB)

HSP 1 Score: 70.5 bits (171), Expect = 1.210e-12
Identity = 42/91 (46.15%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:    1 RASVVLSDMAPSFSGDRDMDQGRLDEDPAIVDGIGSGLLARGGTFLGKFLAGRDERELKEEAGQLFQKVRVVKPPASRSSSSEMYLLATGF 273
            +A VV+SDMA S SG +  D  R+             +L  GGTF+ K LAG  E EL++   Q F+KV  +KPPASRS SSE +++ATGF
Sbjct:  141 KADVVMSDMAASSSGHKQTDHLRIISLCDAAAEFAFDVLEVGGTFVAKVLAGGAEGELQKRLKQRFEKVANIKPPASRSDSSEKFVVATGF 231
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BLAST of mRNA_D-dichotoma_M_contig943.20158.1 vs. uniprot
Match: A0A2G2B3C4_9RHOB (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Marinosulfonomonas sp. TaxID=2030815 RepID=A0A2G2B3C4_9RHOB)

HSP 1 Score: 70.5 bits (171), Expect = 1.240e-12
Identity = 44/91 (48.35%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:    1 RASVVLSDMAPSFSGDRDMDQGRLDEDPAIVDGIGSGLLARGGTFLGKFLAGRDERELKEEAGQLFQKVRVVKPPASRSSSSEMYLLATGF 273
            RA VV+SDMA S SG +  D  R+             +L  GGTF+ K LAG  E EL++   Q F KV  VKPPASRS+SSE +++ATGF
Sbjct:  141 RADVVMSDMAASASGHKQTDHIRIIALCETAAYFAFDVLEEGGTFVAKVLAGGAEGELQKLLKQQFNKVVNVKPPASRSTSSEKFVVATGF 231
[Close]
BLAST of mRNA_D-dichotoma_M_contig943.20158.1 vs. uniprot
Match: A0A365U4Q7_9RHOB (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Rhodosalinus halophilus TaxID=2259333 RepID=A0A365U4Q7_9RHOB)

HSP 1 Score: 70.5 bits (171), Expect = 1.260e-12
Identity = 43/91 (47.25%), Postives = 54/91 (59.34%), Query Frame = 1 
Query:    1 RASVVLSDMAPSFSGDRDMDQGRLDEDPAIVDGIGSGLLARGGTFLGKFLAGRDERELKEEAGQLFQKVRVVKPPASRSSSSEMYLLATGF 273
            RA VV+SDMA + SG +  D  R+         +   +L  GGTF+ K LAG  E  L+ E  + F KV  VKPPASRS SSE Y++ATGF
Sbjct:  143 RADVVMSDMAAASSGHKQTDHLRIVALCEAAAQLAFDVLEEGGTFVAKVLAGGAEDALQAELKRRFAKVSNVKPPASRSDSSEKYVVATGF 233
[Close]
BLAST of mRNA_D-dichotoma_M_contig943.20158.1 vs. uniprot
Match: A0A7C6F5J8_9RHOB (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A7C6F5J8_9RHOB)

HSP 1 Score: 70.5 bits (171), Expect = 1.280e-12
Identity = 45/94 (47.87%), Postives = 58/94 (61.70%), Query Frame = 1 
Query:    1 RASVVLSDMAPSFSGDRDMDQGRLDEDPAIVDG---IGSGLLARGGTFLGKFLAGRDERELKEEAGQLFQKVRVVKPPASRSSSSEMYLLATGF 273
            RA VV+SDMA S SG +  D  R+    A+ D    +   +L  GGTF+ K LAG  E +L++   + F KV  VKPPASRS SSE Y++ATGF
Sbjct:  141 RADVVMSDMAASSSGHKQTDHLRI---IALCDAAAELAFDILEEGGTFVAKVLAGGAEGDLQKRLKRHFAKVVNVKPPASRSDSSEKYVVATGF 231
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig943.20158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KT20_9PHAE1.890e-2279.03FtsJ domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6L7XH06_9PROT5.670e-1452.75Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A0D0PZK0_9RHOB1.350e-1348.35Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A0L0FC24_9EUKA3.050e-1346.24Ribosomal RNA large subunit methyltransferase J (F... [more]
A0A4Q3Y9A2_9RHOB4.810e-1348.89Ribosomal RNA large subunit methyltransferase E n=... [more]
UPI000F8D4DB71.120e-1248.35RlmE family RNA methyltransferase n=1 Tax=Pararhod... [more]
A0A1H8PV46_9RHOB1.210e-1246.15Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A2G2B3C4_9RHOB1.240e-1248.35Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A365U4Q7_9RHOB1.260e-1247.25Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A7C6F5J8_9RHOB1.280e-1247.87Ribosomal RNA large subunit methyltransferase E n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig943contigD-dichotoma_M_contig943:15766..16113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score65.9
Seed ortholog evalue1.1e-08
Seed eggNOG ortholog9483.ENSCJAP00000002596
Preferred nameFTSJ2
KEGG koko:K02427
GOsGO:0000154,GO:0000451,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008283,GO:0008649,GO:0008650,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016436,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0031974,GO:0031981,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360
EggNOG free text desc.FtsJ RNA methyltransferase homolog 2 (E. coli)
EggNOG OGs35P0E@314146,39R6X@33154,3BGFZ@33208,3D3DM@33213,3JBJY@40674,48AF9@7711,490JN@7742,4MA7A@9443,COG0293@1,KOG4589@2759
EC2.1.1.166
COG Functional cat.D
Best tax levelPrimates
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Exons2
Model size285
Cds size261
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig943.20158.1prot_D-dichotoma_M_contig943.20158.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig943 15790..16113 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931191.5376713-UTR-D-dichotoma_M_contig943:15765..157891622931191.5376713-UTR-D-dichotoma_M_contig943:15765..15789Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig943 15766..15789 +
1690799657.502102-UTR-D-dichotoma_M_contig943:15765..157891690799657.502102-UTR-D-dichotoma_M_contig943:15765..15789Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig943 15766..15789 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931191.5542037-CDS-D-dichotoma_M_contig943:15789..158341622931191.5542037-CDS-D-dichotoma_M_contig943:15789..15834Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig943 15790..15834 +
1690799657.5245688-CDS-D-dichotoma_M_contig943:15789..158341690799657.5245688-CDS-D-dichotoma_M_contig943:15789..15834Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig943 15790..15834 +
1622931191.605191-CDS-D-dichotoma_M_contig943:15897..161131622931191.605191-CDS-D-dichotoma_M_contig943:15897..16113Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig943 15898..16113 +
1690799657.5364828-CDS-D-dichotoma_M_contig943:15897..161131690799657.5364828-CDS-D-dichotoma_M_contig943:15897..16113Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig943 15898..16113 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig943.20158.1

>prot_D-dichotoma_M_contig943.20158.1 ID=prot_D-dichotoma_M_contig943.20158.1|Name=mRNA_D-dichotoma_M_contig943.20158.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=87bp
MAPSFSGDRDMDQGRLDEDPAIVDGIGSGLLARGGTFLGKFLAGRDEREL
KEEAGQLFQKVRVVKPPASRSSSSEMYLLATGFLEK*
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mRNA from alignment at D-dichotoma_M_contig943:15766..16113+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig943.20158.1 ID=mRNA_D-dichotoma_M_contig943.20158.1|Name=mRNA_D-dichotoma_M_contig943.20158.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=348bp|location=Sequence derived from alignment at D-dichotoma_M_contig943:15766..16113+ (Dictyota dichotoma ODC1387m male)
CGCGCGAGCGTGGTTTTGTCGGATATGGCCCCGTCGTTCAGCGGAGATCG
CGACATGGACCAGGGACGAGTGGCAGGCTTGCTGCTCGACGCTTTCCGAG
CTTGTCTGGGCGACAACAACGAGCGGCTCGAGCTCGACGAAGACCCGGCC
ATCGTGGACGGCATCGGCAGTGGGCTGTTGGCGCGAGGGGGAACCTTTCT
TGGAAAATTTCTTGCGGGCAGGGACGAGAGGGAGCTGAAGGAAGAGGCGG
GGCAATTGTTCCAGAAGGTCCGAGTGGTGAAGCCTCCCGCTTCACGATCC
TCTTCCAGCGAGATGTACCTGTTGGCGACGGGGTTTCTAGAGAAATAG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig943:15766..16113+

>mRNA_D-dichotoma_M_contig943.20158.1 ID=mRNA_D-dichotoma_M_contig943.20158.1|Name=mRNA_D-dichotoma_M_contig943.20158.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=522bp|location=Sequence derived from alignment at D-dichotoma_M_contig943:15766..16113+ (Dictyota dichotoma ODC1387m male)
ATGGCCCCGTCGTTCAGCGGAGATCGCGACATGGACCAGGGACGAATGGC
CCCGTCGTTCAGCGGAGATCGCGACATGGACCAGGGACGACTCGACGAAG
ACCCGGCCATCGTGGACGGCATCGGCAGTGGGCTGTTGGCGCGAGGGGGA
ACCTTTCTTGGAAAATTTCTTGCGGGCAGGGACGAGAGGGAGCTGAAGGA
AGAGGCGGGGCAATTGTTCCAGAAGGTCCGAGTGGTGAAGCCTCCCGCTT
CACGATCCTCTTCCAGCGAGATGTACCTGTTGGCGACGGGGTTTCTAGAG
AAATAGCTCGACGAAGACCCGGCCATCGTGGACGGCATCGGCAGTGGGCT
GTTGGCGCGAGGGGGAACCTTTCTTGGAAAATTTCTTGCGGGCAGGGACG
AGAGGGAGCTGAAGGAAGAGGCGGGGCAATTGTTCCAGAAGGTCCGAGTG
GTGAAGCCTCCCGCTTCACGATCCTCTTCCAGCGAGATGTACCTGTTGGC
GACGGGGTTTCTAGAGAAATAG
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