mRNA_D-dichotoma_M_contig942.20155.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig942.20155.1
Unique NamemRNA_D-dichotoma_M_contig942.20155.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig942.20155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig942contigD-dichotoma_M_contig942:214496..215212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size717
Cds size420
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931190.3353827-UTR-D-dichotoma_M_contig942:214495..2147921622931190.3353827-UTR-D-dichotoma_M_contig942:214495..214792Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig942 214496..214792 +
1690799656.9303489-UTR-D-dichotoma_M_contig942:214495..2147921690799656.9303489-UTR-D-dichotoma_M_contig942:214495..214792Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig942 214496..214792 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931190.357807-CDS-D-dichotoma_M_contig942:214792..2152121622931190.357807-CDS-D-dichotoma_M_contig942:214792..215212Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig942 214793..215212 +
1690799656.9399502-CDS-D-dichotoma_M_contig942:214792..2152121690799656.9399502-CDS-D-dichotoma_M_contig942:214792..215212Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig942 214793..215212 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig942.20155.1prot_D-dichotoma_M_contig942.20155.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig942 214793..215212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig942.20155.1

>prot_D-dichotoma_M_contig942.20155.1 ID=prot_D-dichotoma_M_contig942.20155.1|Name=mRNA_D-dichotoma_M_contig942.20155.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=140bp
MPFFWPAPFELMTEVVLSCHPKFSPRDPELTLAPLPKHCHSSADFNFLSS
GLNSSQALASQACLNVASLGLFSTGPPHNLVLIEIESTENLTRISIEIMI
TPGVFQYTLPWGSFLPLPRVHFTLCISLQLAYTERLINQN
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mRNA from alignment at D-dichotoma_M_contig942:214496..215212+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig942.20155.1 ID=mRNA_D-dichotoma_M_contig942.20155.1|Name=mRNA_D-dichotoma_M_contig942.20155.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=717bp|location=Sequence derived from alignment at D-dichotoma_M_contig942:214496..215212+ (Dictyota dichotoma ODC1387m male)
AAAAGTCCGCGAGGCTCGGGCCCTCATCCGTAATTCCCGCTTCTCTTTTC
AGAGCGCTCAACAGCTAGCTCGTTTTCGTTCACATCTCGCAATTCTCTTC
CTTGTAGTTGGGTCATCAAAATAATGTACAGGAATGAACGATCAATGAGA
AATCTCATCTGAATCGGCGCGTGACCCGCACCAGATCCTCCCACCTCAGT
CACCGCGTCCGTGTAATCCTTATACTCGTGCAAAATTTTCCGCAACCCCG
CCAAAGCCACATCATTCCGCCCAAGGCGAGGAGGCCTCACACTGGTCATG
CCGTTCTTCTGGCCTGCTCCATTCGAGCTCATGACTGAAGTAGTGTTAAG
TTGTCACCCAAAGTTCTCACCACGCGATCCAGAGCTCACCCTCGCTCCAC
TTCCAAAGCACTGCCACTCTTCAGCAGATTTCAATTTCCTCAGTTCTGGT
CTCAATTCCTCTCAGGCTCTAGCCTCTCAAGCTTGCCTCAACGTCGCGTC
TCTTGGCCTCTTCTCGACAGGTCCACCTCACAACCTCGTACTGATCGAGA
TTGAATCTACGGAAAACTTAACTCGAATTTCAATTGAAATTATGATAACA
CCTGGTGTATTTCAGTACACTCTTCCCTGGGGATCTTTCCTACCACTGCC
CAGAGTCCATTTCACACTATGCATTAGCCTTCAGCTCGCATACACAGAAA
GATTAATTAACCAAAAC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig942:214496..215212+

>mRNA_D-dichotoma_M_contig942.20155.1 ID=mRNA_D-dichotoma_M_contig942.20155.1|Name=mRNA_D-dichotoma_M_contig942.20155.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=840bp|location=Sequence derived from alignment at D-dichotoma_M_contig942:214496..215212+ (Dictyota dichotoma ODC1387m male)
ATGCCGTTCTTCTGGCCTGCTCCATTCGAGCTCATGACTGAAGTAGTGTT
AAGTTGTCACCCAAAGTTCTCACCACGCGATCCAGAGCTCACCCTCGCTC
CACTTCCAAAGCACTGCCACTCTTCAGCAGATTTCAATTTCCTCAGTTCT
GGTCTCAATTCCTCTCAGGCTCTAGCCTCTCAAGCTTGCCTCAACGTCGC
GTCTCTTGGCCTCTTCTCGACAGGTCCACCTCACAACCTCGTACTGATCG
AGATTGAATCTACGGAAAACTTAACTCGAATTTCAATTGAAATTATGATA
ACACCTGGTGTATTTCAGTACACTCTTCCCTGGGGATCTTTCCTACCACT
GCCCAGAGTCCATTTCACACTATGCATTAGCCTTCAGCTCGCATACACAG
AAAGATTAATTAACCAAAACATGCCGTTCTTCTGGCCTGCTCCATTCGAG
CTCATGACTGAAGTAGTGTTAAGTTGTCACCCAAAGTTCTCACCACGCGA
TCCAGAGCTCACCCTCGCTCCACTTCCAAAGCACTGCCACTCTTCAGCAG
ATTTCAATTTCCTCAGTTCTGGTCTCAATTCCTCTCAGGCTCTAGCCTCT
CAAGCTTGCCTCAACGTCGCGTCTCTTGGCCTCTTCTCGACAGGTCCACC
TCACAACCTCGTACTGATCGAGATTGAATCTACGGAAAACTTAACTCGAA
TTTCAATTGAAATTATGATAACACCTGGTGTATTTCAGTACACTCTTCCC
TGGGGATCTTTCCTACCACTGCCCAGAGTCCATTTCACACTATGCATTAG
CCTTCAGCTCGCATACACAGAAAGATTAATTAACCAAAAC
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