mRNA_D-dichotoma_M_contig937.20097.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig937.20097.1
Unique NamemRNA_D-dichotoma_M_contig937.20097.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig937.20097.1 vs. uniprot
Match: A0A6H5KTQ0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTQ0_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 7.920e-21
Identity = 78/206 (37.86%), Postives = 111/206 (53.88%), Query Frame = 2 
Query:   98 MKLSVFVTILLPSVYAFVVP------SQLPSSGWVRYNSASNRNYPGHLAA-SSYSPEPAWSVTSFFQDILGTKPELGKMILPEADPAEEESRKRSMITQERKCMEGQLCSLIRIGGEHLSPKVGEHVKRLTHELEDMQANG-RCDMNSASLAGRWKLLYSSA-----GSSKCPDVQGTVEEISYVSENYRISHT-EKGVLRIYKR 673
            MKLSVF+ +LLPSV AFV P      + L              + P  + A    + E  WS+ + ++D++G      K+    A+    E +K+ ++ +ER+ +EGQL SLIRI G  +S K  + V+RL  ELE +Q N        + L G WKL+YS A     G  +  D   T+E ISYVSENYR+SH+ E+  LR+YKR
Sbjct:    1 MKLSVFL-VLLPSVSAFVSPKPVVLNNHLQRXXXXXXXXXXXSSTPTAVGAWKQANGEGPWSIATLWRDVVGPAMNKAKVDSTAAE-VYHELKKKVLVKKERQSLEGQLSSLIRIEGNSMSCKKQDCVRRLATELESLQDNAAEFGSQKSGLTGSWKLIYSRAACEGKGGGRGGDRLPTIEVISYVSENYRLSHSGEEDDLRVYKR 204
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BLAST of mRNA_D-dichotoma_M_contig937.20097.1 vs. uniprot
Match: D7G1W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1W5_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 6.070e-9
Identity = 40/88 (45.45%), Postives = 53/88 (60.23%), Query Frame = 2 
Query:  431 HLSPKVGEHVKRLTHELEDMQANG-RCDMNSASLAGRWKLLYSSA-----GSSKCPDVQGTVEEISYVSENYRISHT-EKGVLRIYKR 673
            HL  +  + V+RL  ELE +Q N        + L G WKL+YSSA     G  +  D   T+E+ISYVSENYR+SH+ E+  LR+YKR
Sbjct:    4 HLDSQKRDCVRRLATELESLQDNAAEFGSQKSGLTGSWKLIYSSAACEGNGGGRGGDRLTTIEDISYVSENYRLSHSGEQDDLRVYKR 91
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig937.20097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTQ0_9PHAE7.920e-2137.86Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G1W5_ECTSI6.070e-945.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig937contigD-dichotoma_M_contig937:45562..50204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons4
Model size2303
Cds size738
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig937.20097.1prot_D-dichotoma_M_contig937.20097.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig937 47030..50107 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931178.999291-UTR-D-dichotoma_M_contig937:45561..470291622931178.999291-UTR-D-dichotoma_M_contig937:45561..47029Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig937 45562..47029 -
1690799651.375065-UTR-D-dichotoma_M_contig937:45561..470291690799651.375065-UTR-D-dichotoma_M_contig937:45561..47029Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig937 45562..47029 -
1622931179.0880992-UTR-D-dichotoma_M_contig937:50107..502041622931179.0880992-UTR-D-dichotoma_M_contig937:50107..50204Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig937 50108..50204 -
1690799651.430246-UTR-D-dichotoma_M_contig937:50107..502041690799651.430246-UTR-D-dichotoma_M_contig937:50107..50204Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig937 50108..50204 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931179.0177543-CDS-D-dichotoma_M_contig937:47029..473271622931179.0177543-CDS-D-dichotoma_M_contig937:47029..47327Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig937 47030..47327 -
1690799651.386422-CDS-D-dichotoma_M_contig937:47029..473271690799651.386422-CDS-D-dichotoma_M_contig937:47029..47327Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig937 47030..47327 -
1622931179.0383964-CDS-D-dichotoma_M_contig937:47897..479891622931179.0383964-CDS-D-dichotoma_M_contig937:47897..47989Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig937 47898..47989 -
1690799651.400081-CDS-D-dichotoma_M_contig937:47897..479891690799651.400081-CDS-D-dichotoma_M_contig937:47897..47989Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig937 47898..47989 -
1622931179.0559065-CDS-D-dichotoma_M_contig937:49227..493441622931179.0559065-CDS-D-dichotoma_M_contig937:49227..49344Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig937 49228..49344 -
1690799651.4098513-CDS-D-dichotoma_M_contig937:49227..493441690799651.4098513-CDS-D-dichotoma_M_contig937:49227..49344Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig937 49228..49344 -
1622931179.0726676-CDS-D-dichotoma_M_contig937:49876..501071622931179.0726676-CDS-D-dichotoma_M_contig937:49876..50107Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig937 49877..50107 -
1690799651.4192052-CDS-D-dichotoma_M_contig937:49876..501071690799651.4192052-CDS-D-dichotoma_M_contig937:49876..50107Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig937 49877..50107 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig937.20097.1

>prot_D-dichotoma_M_contig937.20097.1 ID=prot_D-dichotoma_M_contig937.20097.1|Name=mRNA_D-dichotoma_M_contig937.20097.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=246bp
MKLSVFVTILLPSVYAFVVPSQLPSSGWVRYNSASNRNYPGHLAASSYSP
EPAWSVTSFFQDILGTKPELGKMILPEADPAEEESRKRSMITQERKCMEG
QLCSLIRIGGEHLSPKVGEHVKRLTHELEDMQANGRCDMNSASLAGRWKL
LYSSAGSSKCPDVQGTVEEISYVSENYRISHTEKGVLRIYKRSLKKMEDD
TANAGHLLWQGAGRDRKTTTATASRRSARKPKQPLRKRLFFGWRG*
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mRNA from alignment at D-dichotoma_M_contig937:45562..50204-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig937.20097.1 ID=mRNA_D-dichotoma_M_contig937.20097.1|Name=mRNA_D-dichotoma_M_contig937.20097.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=4643bp|location=Sequence derived from alignment at D-dichotoma_M_contig937:45562..50204- (Dictyota dichotoma ODC1387m male)
GAGTCACCTTCCCCCCCCTACCTCCCCGTTCGGCTCCACCGTACACCACG
GCACCGGTGCCTTCCCACAAAATAATTTTTAGTTTCTTGCGCAAATCATG
AAACTTTCAGTGTTCGTTACGATCCTCCTCCCATCTGTGTATGCGTTTGT
AGTTCCTAGCCAGCTTCCCTCGAGCGGCTGGGTACGCTACAACTCCGCAA
GCAACAGGAACTACCCTGGACATCTTGCCGCATCCTCATACAGCCCTGAG
CCGGCTTGGTCGGTCACATCTTTCTTCCAGGACATACTGGGTACGAAACC
AGAGCTTGGAAAGATGATCTTACCTGAGGTGAGTTGACTTGTCTGTTTTG
AATACACTGAAGAGCGCCCCCGGGAAGCCCAAGACTAACGACTGCGCCTC
TGCTTGTATTGGGCATCACCCCCATCCTCAGGGAGCACATGGTTGTGATG
TACAAACTCCTTGAGGGCATCACAAGAGTACTAGAGCGTGCAGCTTGGTT
GCAGAGAAACCATTGTAACAAATCCTGTCTAAAATAAGATACGCACGACC
GTTGAACAATCGGGGTATGGTTATCTTCAAGTGTCAAAAGACTAGTGTCA
AAAGACTGGTTGAAGACCCCTTTGAGGATCGACTGCACCTCTGAGCAGTC
ATCCTGTTGTGATCGATATAATACCTGTAGATCAGGAGAAGCCTGATGGA
AAGGCTTGATGCGTGCTACTCGTTGCGAACATATTTGGCACAACTCCGGT
GACTTTCGAAAAGGACCGTCTGGACTTCAACCGAACCTTTGAAACGTCGT
TTCTACTGGACTAGCTTGATGATGCCCCCTGAACGGCTGTCTCGACACAT
GCAAACGCAGGCGGACCCTGCGGAAGAGGAGAGCCGCAAGCGATCTATGA
TCACGCAAGAGCGGAAGTGCATGGAGGGACAGCTCTGCTCTCTCATCCGG
ATTGGTGGAGAACACCTTTCTCCGAAGGTGAGCATGGTCCATGCGTCCTC
CATGCCGCATTTTTGTCCGGTAGAGGAAGTTCCCCATTTTCTCCAGTTCT
CTTTAAGGCCATAGTGCCGTGCGGCAACAATATCAAGGACCCGTTTTGCC
TATCCTGTAGCTGGTAACTTCACACAAGAAGCACTCCTGCTTAGCCCCTA
GATCCTCCAAATCGACGGTAGCCTTGAATGTTCGGCCGTTGCTGGGTTTT
GATGGCAGCTGTCAATGCACCGGTGACCATACCCCCAACATGGATCGCAC
CTATCAGAACTCCTCGGCAACATCGGATGGTAGGTTTCTGTGGGTTGCGC
GTATACCGAGGGTGCATCCCGCTTCATGAAGTTTTCGTTTTGTTTCGTGC
CATACAGTGCATGTTCTACTGGAGTCCCTGAACCCTCTTTTTATTTACTC
ACATCACGTTCTCAAGCACTACTGTCGAGAAGGAATCACGAATGACGTTC
GTTCTTTGTTGAATGGAACAACCCGGGGCGATATGATAAATCGGCAGGTA
CAAGGTGTAGGCTCACGCCTTTGTCGTCTGAAGCTTGTCCCGGCGGCTTA
CGGTGACGAATTCCTGCTAGGTGCTGAGGGTTACCTTACCTCTCTCTTGC
CGAGCCGACTAAGCAAGCCGTGCGCCAATGATGCGCCCGAACCTAGAGAG
AGCAAGTTCAAGAACGCACACAGCCAGAGCATCCTGGCCATGTATTTTGT
TGCAATAGTGTGTTGGCGAAAATTATAAATATAGTTTGATTTATCGCTAA
CTTCACCAGAAACCGACGACAACGGAAACTAGATTCGGCGAAATCTGATC
TGATGAGATTTAGAGTTTACTCTATCGCTAACTTCACCTGAGTTGCCCCT
TTACGAACAGCACCACGAAAGTTTATAAGAATTTGGGAGGATTCCCATGA
AGATCCCTGAAGTTAACTCCAACACTCGCATATTCATGGAACCCTCTTGG
GAAAGAGTAAGGCGGGATTATGTCGTTGGGTGTAGGTTGGACTGGTTGTG
CCGGTGATCATCACGAATGCCCGGAAAGAGACTCTAGTTGGCTGTTCGAA
AGTTTTAACTCGGACATCGCCGAATCTAACGTCCGTTATCGTCTGTTAAC
GGTAAATGAAACTATAATTGAAAATTCCGCAAACACTTATTCCCGGAGAG
ATGGATGGTGACGTCAAGATGATGACGTCAAGATGGCGAAACTGCTCCCT
CGTGGTCCCGAGCAGGTGGGGGAGCATGTGAAACGTCTCACGCACGAGCT
CGAAGACATGCAGGCCAATGGTCGCTGCGACATGAACAGCGCAAGCCTCG
CGGGAAGGTAAGCGAGACCGGCTGTCCATCATAACGTTTGCTTCTGCGTA
CGCGCCGGCAATGTACGTTCCCCCCCTCAGGACTGCTGTAGAATGCGAAT
CGACACTACAGGAGAGTGCTGTACGTGGTCAAAAATATCCGATAATGCTT
TTCAGAACACCATTGCAGACACACGTCGTCGTTTTGGGTCTTTTCATCCA
TTTTTTTTTTTGTAGATGAAACGAATCCTCGGAAGCTCATTGCCGTGGAA
CCTTCACCTTTTACAGATTTTTCCAGCTAGAAGAACTGGAGGTAGGATCG
CGGTCCAAGGGACGTAACTCAGGTTCCAGGAGGAATTTCCGCGGTCGTAG
CTCCCAACAGCGCCAGGACGTAGCAAGTCAGCGTGAAGCGCAACCCTTTT
AAGCATTTCGGGAAGGGGGTGCAAGAGGTGTGGCGGCAAGTGCCCTGTCT
CTCGGTATATCCACGCTCCTAACTACCGATGGATATCGTAACTCCTACTT
CATGGTTCCCAATCTGAAAGATAAAACACGCACGGCCATGCCGTTTCCCT
TTGCCTTACGATATCCTCCTTCTGAAGGTGGAAGCTACTCTACAGCAGCG
CGGGATCGTCGAAGTGTCCCGACGTCCAGGGCACGGTGGAAGAGATCTCC
TACGTCTCCGAGAACTACCGGATCTCCCACACGGAGAAAGGGGTCTTGCG
CATCTACAAGCGATCCCTGAAGAAAATGGAAGACGATACGGCCAACGCCG
GGCACTTGCTATGGCAAGGAGCCGGTCGCGACCGAAAGACAACAACGGCG
ACGGCAAGCAGGAGGTCAGCCCGGAAGCCGAAGCAGCCCCTCCGCAAACG
TCTCTTCTTTGGATGGCGCGGCTGATACGGTTTCGTTGGGTGCAAATTGC
ACTTCGTTACGGTTTCACTCGCCTCGAACGGCTCAAGAGCTACGATGGCG
CGTGTGAAGACGGACGAAAGACGGTTGCACAGGTCGAAGAGACTTCGTTG
CGCGAGCACCTGGAATGAACGGAATCAGGGGGGTTGCACCAAAGATTGTC
GTGGAATTCGAGAGGTGGGGGCCTGTGCGAAATCCTGGGGAGAGAAGGGA
GCGTGTTCATGAGCAAGGGGTCGATGTTGGGTTCCCAAGTGCAGGGGAAA
ACATGGTACGGGTGATGTCGTTGGTCAAAGCTTGCCGAACTGGTTAGGGC
CCCGGCCGAATCGGTTTGGCTGCGTTTGCAGTAGATGACGACTATGGGCT
TGAAGGAGGCCGTAAAGATGGAAGCGTGGTGATAAGTTGAATGGCATTGA
TACCAACGCTGCCCAATCAGAAAACACCCAGGGGTGAGTGTGATCGAAAA
GGTGGTGGAGCAGAAGGTGGACTTGGGATGTAATGTGACGTTGAACACGT
GCCTGCGTAGCGACGGGAGACAAACCTGTCCAGGAAGACGTCCTCCGAAG
TTTGAAGCTTGAGATGCACGTTCGAATTCGGGGTTGTCTTCTGTTGCATC
CGTGTACCTGACGGTGGCACGAAAATGTACTTGGAGCGAAGTAAGTCATT
CGATGGTTTGTTATCTTTGGAGGCGTGTAGATGACTGGGGACTGTGCACG
TTCATCCGCGCAAACGCCTCGCGCGGCCGGTTAACCTTTTGAGAAGATTA
GAGGTGATGATTAACGAGGCGTTTGACGCGGAGTCTGATCATTGCGGATA
TATATACCCGATTCGTCGTACATGAGCAAGTAAACGGCGGTTGGTAACAG
GTTGTATCGCAGCATGAAGGACAAAGCGCCATGGATATCAGGATCAGGCG
TGTAAGGTATAGGACGAGGTTGGTAGAGGGCATAGAAGCATCACGAGATA
CAGCTTTAAGAAGTAGTCTTGGGCATTTCTCGTAATGGGTCGACACAGCG
TGTTAAATGCCCGTCTGGGCTAACTCACCGAGTACATGTAGACGTGGCTC
GGAGGTGAGTCTCAGGTCGGACGTAATTGTTGTAGGGTTGGTGAAACCCC
CTCCATTGTGATGTAAAACATGAGGGGGTATAGAAGAGAGAAGATACTCT
GGATGTTTCCCATCGTGATCCACCATGAAGCTGATGGACGTGATGATGGT
GTAAGGAGCGAACTGATGGAAGAATGAATGCCTTGGGTGCTGTTGAGGCA
AAGTGTCGAGAAAGAACTAATTTTACGGATGGTGCTCCTCGGGAGACCTA
CGGATGCTGGGGTGTTCGATTTCGAAGGGAAAGGCAACGGCTGTCTGGCC
TGCCGAAATGACGTGAAGCGAAGCTATGTGTGTACAGAGCATTACTCGAC
TGCAGGGCCATACGCTGTCAATTGTGGCAAATTGTCTTGGAAG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig937:45562..50204-

>mRNA_D-dichotoma_M_contig937.20097.1 ID=mRNA_D-dichotoma_M_contig937.20097.1|Name=mRNA_D-dichotoma_M_contig937.20097.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1476bp|location=Sequence derived from alignment at D-dichotoma_M_contig937:45562..50204- (Dictyota dichotoma ODC1387m male)
ATGAAACTTTCAGTGTTCGTTACGATCCTCCTCCCATCTGTGTATGCGTT
TGTAGTTCCTAGCCAGCTTCCCTCGAGCGGCTGGGTACGCTACAACTCCG
CAAGCAACAGGAACTACCCTGGACATCTTGCCGCATCCTCATACAGCCCT
GAGCCGGCTTGGTCGGTCACATCTTTCTTCCAGGACATACTGGGTACGAA
ACCAGAGCTTGGAAAGATGATCTTACCTGAGATGAAACTTTCAGTGTTCG
TTACGATCCTCCTCCCATCTGTGTATGCGTTTGTAGTTCCTAGCCAGCTT
CCCTCGAGCGGCTGGGTACGCTACAACTCCGCAAGCAACAGGAACTACCC
TGGACATCTTGCCGCATCCTCATACAGCCCTGAGCCGGCTTGGTCGGTCA
CATCTTTCTTCCAGGACATACTGGGTACGAAACCAGAGCTTGGAAAGATG
ATCTTACCTGAGGCGGACCCTGCGGAAGAGGAGAGCCGCAAGCGATCTAT
GATCACGCAAGAGCGGAAGTGCATGGAGGGACAGCTCTGCTCTCTCATCC
GGATTGGTGGAGAACACCTTTCTCCGAAGGCGGACCCTGCGGAAGAGGAG
AGCCGCAAGCGATCTATGATCACGCAAGAGCGGAAGTGCATGGAGGGACA
GCTCTGCTCTCTCATCCGGATTGGTGGAGAACACCTTTCTCCGAAGGTGG
GGGAGCATGTGAAACGTCTCACGCACGAGCTCGAAGACATGCAGGCCAAT
GGTCGCTGCGACATGAACAGCGCAAGCCTCGCGGGAAGGTGGGGGAGCAT
GTGAAACGTCTCACGCACGAGCTCGAAGACATGCAGGCCAATGGTCGCTG
CGACATGAACAGCGCAAGCCTCGCGGGAAGGTGGAAGCTACTCTACAGCA
GCGCGGGATCGTCGAAGTGTCCCGACGTCCAGGGCACGGTGGAAGAGATC
TCCTACGTCTCCGAGAACTACCGGATCTCCCACACGGAGAAAGGGGTCTT
GCGCATCTACAAGCGATCCCTGAAGAAAATGGAAGACGATACGGCCAACG
CCGGGCACTTGCTATGGCAAGGAGCCGGTCGCGACCGAAAGACAACAACG
GCGACGGCAAGCAGGAGGTCAGCCCGGAAGCCGAAGCAGCCCCTCCGCAA
ACGTCTCTTCTTTGGATGGCGCGGCTGAGTGGAAGCTACTCTACAGCAGC
GCGGGATCGTCGAAGTGTCCCGACGTCCAGGGCACGGTGGAAGAGATCTC
CTACGTCTCCGAGAACTACCGGATCTCCCACACGGAGAAAGGGGTCTTGC
GCATCTACAAGCGATCCCTGAAGAAAATGGAAGACGATACGGCCAACGCC
GGGCACTTGCTATGGCAAGGAGCCGGTCGCGACCGAAAGACAACAACGGC
GACGGCAAGCAGGAGGTCAGCCCGGAAGCCGAAGCAGCCCCTCCGCAAAC
GTCTCTTCTTTGGATGGCGCGGCTGA
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