mRNA_D-dichotoma_M_contig932.20063.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig932.20063.1
Unique NamemRNA_D-dichotoma_M_contig932.20063.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig932.20063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig932contigD-dichotoma_M_contig932:35738..36074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size337
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931173.2002554-CDS-D-dichotoma_M_contig932:35737..360641622931173.2002554-CDS-D-dichotoma_M_contig932:35737..36064Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig932 35738..36064 +
1690799648.3732343-CDS-D-dichotoma_M_contig932:35737..360641690799648.3732343-CDS-D-dichotoma_M_contig932:35737..36064Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig932 35738..36064 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931173.217709-UTR-D-dichotoma_M_contig932:36064..360741622931173.217709-UTR-D-dichotoma_M_contig932:36064..36074Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig932 36065..36074 +
1690799648.38146-UTR-D-dichotoma_M_contig932:36064..360741690799648.38146-UTR-D-dichotoma_M_contig932:36064..36074Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig932 36065..36074 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig932.20063.1prot_D-dichotoma_M_contig932.20063.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig932 35738..36064 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig932.20063.1

>prot_D-dichotoma_M_contig932.20063.1 ID=prot_D-dichotoma_M_contig932.20063.1|Name=mRNA_D-dichotoma_M_contig932.20063.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=109bp
KTLGPSSPIRVQLQTANTTNGHIHPPKFPSLYTARSVQSNCHDKCIQPNQ
DFLAIQTPVHLFAPLITRRFTRGGGDDRPATGHGITPRPTRRTHFDSRMA
NKELTSDA*
back to top

mRNA from alignment at D-dichotoma_M_contig932:35738..36074+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig932.20063.1 ID=mRNA_D-dichotoma_M_contig932.20063.1|Name=mRNA_D-dichotoma_M_contig932.20063.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=337bp|location=Sequence derived from alignment at D-dichotoma_M_contig932:35738..36074+ (Dictyota dichotoma ODC1387m male)
AAAACCTTAGGCCCAAGCTCTCCAATCAGAGTGCAGCTTCAAACCGCGAA
CACCACAAACGGGCACATCCATCCGCCAAAATTTCCGAGTTTATACACAG
CCCGCAGCGTTCAGTCAAATTGCCACGATAAATGCATACAACCAAACCAG
GACTTCCTTGCGATTCAAACGCCCGTACACCTCTTCGCGCCATTGATAAC
GAGGCGTTTCACTAGAGGGGGAGGGGACGACAGACCAGCCACTGGACATG
GCATTACCCCTAGGCCCACACGTCGAACGCACTTCGATTCCAGGATGGCC
AACAAAGAGCTCACCAGCGACGCTTAGACAGCAGACG
back to top

Coding sequence (CDS) from alignment at D-dichotoma_M_contig932:35738..36074+

>mRNA_D-dichotoma_M_contig932.20063.1 ID=mRNA_D-dichotoma_M_contig932.20063.1|Name=mRNA_D-dichotoma_M_contig932.20063.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=654bp|location=Sequence derived from alignment at D-dichotoma_M_contig932:35738..36074+ (Dictyota dichotoma ODC1387m male)
AAAACCTTAGGCCCAAGCTCTCCAATCAGAGTGCAGCTTCAAACCGCGAA
CACCACAAACGGGCACATCCATCCGCCAAAATTTCCGAGTTTATACACAG
CCCGCAGCGTTCAGTCAAATTGCCACGATAAATGCATACAACCAAACCAG
GACTTCCTTGCGATTCAAACGCCCGTACACCTCTTCGCGCCATTGATAAC
GAGGCGTTTCACTAGAGGGGGAGGGGACGACAGACCAGCCACTGGACATG
GCATTACCCCTAGGCCCACACGTCGAACGCACTTCGATTCCAGGATGGCC
AACAAAGAGCTCACCAGCGACGCTTAGAAAACCTTAGGCCCAAGCTCTCC
AATCAGAGTGCAGCTTCAAACCGCGAACACCACAAACGGGCACATCCATC
CGCCAAAATTTCCGAGTTTATACACAGCCCGCAGCGTTCAGTCAAATTGC
CACGATAAATGCATACAACCAAACCAGGACTTCCTTGCGATTCAAACGCC
CGTACACCTCTTCGCGCCATTGATAACGAGGCGTTTCACTAGAGGGGGAG
GGGACGACAGACCAGCCACTGGACATGGCATTACCCCTAGGCCCACACGT
CGAACGCACTTCGATTCCAGGATGGCCAACAAAGAGCTCACCAGCGACGC
TTAG
back to top