mRNA_D-dichotoma_M_contig932.20069.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig932.20069.1
Unique NamemRNA_D-dichotoma_M_contig932.20069.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig932.20069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig932contigD-dichotoma_M_contig932:248018..249937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size190
Cds size153
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig932.20069.1prot_D-dichotoma_M_contig932.20069.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig932 248055..249937 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931173.103843-UTR-D-dichotoma_M_contig932:248017..2480541622931173.103843-UTR-D-dichotoma_M_contig932:248017..248054Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig932 248018..248054 +
1690799648.348385-UTR-D-dichotoma_M_contig932:248017..2480541690799648.348385-UTR-D-dichotoma_M_contig932:248017..248054Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig932 248018..248054 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931173.1257036-CDS-D-dichotoma_M_contig932:248054..2480821622931173.1257036-CDS-D-dichotoma_M_contig932:248054..248082Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig932 248055..248082 +
1690799648.3567731-CDS-D-dichotoma_M_contig932:248054..2480821690799648.3567731-CDS-D-dichotoma_M_contig932:248054..248082Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig932 248055..248082 +
1622931173.1463408-CDS-D-dichotoma_M_contig932:249812..2499371622931173.1463408-CDS-D-dichotoma_M_contig932:249812..249937Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig932 249813..249937 +
1690799648.3647692-CDS-D-dichotoma_M_contig932:249812..2499371690799648.3647692-CDS-D-dichotoma_M_contig932:249812..249937Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig932 249813..249937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig932.20069.1

>prot_D-dichotoma_M_contig932.20069.1 ID=prot_D-dichotoma_M_contig932.20069.1|Name=mRNA_D-dichotoma_M_contig932.20069.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=51bp
MFKSLSGSTDHAANQPLGGFPPGGPPNHPLGFHPVRAVLLTGILTAGGLL
G
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mRNA from alignment at D-dichotoma_M_contig932:248018..249937+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig932.20069.1 ID=mRNA_D-dichotoma_M_contig932.20069.1|Name=mRNA_D-dichotoma_M_contig932.20069.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=1920bp|location=Sequence derived from alignment at D-dichotoma_M_contig932:248018..249937+ (Dictyota dichotoma ODC1387m male)
CAACATCCCCGAAGTCTCTAGTTGACATAGCGTCCTCATGTTCAAGTCAC
TCTCGGGAAGCACAGGCGAGTTCGTTTCCTCGGGACTGGTCCGTTTTCCT
GGTCAAGTGATCCACTGTACTGTAGCACCTGAAGTTCACATGAAGACAGA
CTTCTTGAGAAGATTTGTAGTTTTTACATCCTGCGTGTATTTACTGTGAG
ATACTCATCAAAGTGTACTCTGGATGGGATTGGACTGGTCGTATCATTTC
AAGGTTCGAGTGCATCGGATTGTGATGGGTCAAGCTCGGCAGGACGTCAA
GCCCGAGGGGCACATCTAGGGATAAATGAAGTCGGCCTCGGATTCGGATC
TGAGCCTCTCTCGGAGTCTCGTTTCCTTGTTACGAAAAACCACTCTCTAT
GACGATGGCACGGCTGTGATCATGGGTAAAACGTGGTCATCGATGACCGG
AATGGCACATGTTCTCGCGCGTTTGCCCGCTCGGTTTCGTTCTCTTTGGT
ACCGGTTCGTGTGAGAGCTCAGTCGACCCGTTTCAACCCGAGTGTCCGTT
ACCTTTGAAACCGACATCTTCGTCGCCGATGTCGATTATGCGGCGCGCTG
TTCACACACGGCCATCTGTAGAGCATGGTCCGATTACACCTGTCAAGAAT
GCTTGTGGTCGTGTCACGCGTTCTTGACACGAGAAACTGTCATCTCGGTC
CTCGGACAGAGTCCCAAGTTTCGCTGCCTCAGCCCAATCCCTCGTGAACC
TTTGCACGACAGATGTGTAACTTCCTGCAGTAGTGCGTGCACACGGGTGT
AACGGAGTATGCGAGGAAAAAAGTACAGCAGTCCAAATCTGCCCCGAAAA
ACTTGTGATCATTTTTTGGGGGGTCACGTACTCAGTTACACCCTTGAGCA
TTACTGTACTGTACTGTACTGTACTGTACTGTACTGTACTGTACTGTACT
GTACTGTACTGTACTGTACTGTACTGTAGCATCGAGTTGGTTCTTATCTC
TTGCTTTTGGTGTACAGTTGACCCCCCACATTAAGGCCACCGTCCCTGGG
TTAGATTAAGGCCGCCCCTCACATTAACGGGGGTTTAATCTGAGAGCTGA
CCGTAATCTAACCCAGGGACTGCCCTATAATTTATATACGTAACTCCTAC
CTTTGTGGTGGCCTTAATCTGAGGGACCGGACCGCGCTACTCATGGGACG
CCTTAAGTCATCTGGGGGGTCGACTGTAGGACCTGACCTAACCCGAATCG
GGCGCCGAAAGGGTTTATCTGGGTCGGGTCCGGCTCGCGGCATTTTGACC
ACGGGTGGAAAACAGTACGAGGGCGAGGGTTATAACTCCTTGAAGTGAGT
GGAGGCGTGAAGAGCTTGAAGTGAGTGGGGAACTCGAACGCGATGCAAAC
GTCTCGTTTTCCAGGGAGTCTTCCCCAGGCTTGCGCTCCCTGTGACTTTT
GGCAGTCCTTCTGGGTACCATTCGACGCGACTTGTGACCTTTGGCCTCCA
ACATTCATGCGGCAAAAATCAAACTCCAGTCCAGAAAAAGATGTGGAAGC
GTTCTCTTCGCCCTGTAGTATATATACACCCCATATGTATTCCATGGTGT
GCCTATATTGCCGTATCCGGGCCGCCTTGTGGTAACGTTCATTTGTTGTC
ACCCTCTCGAGCAAATCTGTAGGAGTTCCTGGCTCGAGGCTTTTCACCGC
CGCTGGTCAGCATGAAACCGAAAAACGATGGACACAGTGCCGCGCTGAAA
AGTAAGGTGTCGCTCCGCCCATCCCCGCCTCGCTCTCCGCTGCAGATCAT
GCAGCAAACCAACCTCTTGGAGGGTTTCCACCGGGGGGTCCCCCAAACCA
CCCCCTAGGTTTCCATCCCGTGAGGGCGGTGCTCTTGACAGGCATCCTAA
CGGCTGGGGGTTTGCTCGGG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig932:248018..249937+

>mRNA_D-dichotoma_M_contig932.20069.1 ID=mRNA_D-dichotoma_M_contig932.20069.1|Name=mRNA_D-dichotoma_M_contig932.20069.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=306bp|location=Sequence derived from alignment at D-dichotoma_M_contig932:248018..249937+ (Dictyota dichotoma ODC1387m male)
ATGTTCAAGTCACTCTCGGGAAGCACAGATGTTCAAGTCACTCTCGGGAA
GCACAGATCATGCAGCAAACCAACCTCTTGGAGGGTTTCCACCGGGGGGT
CCCCCAAACCACCCCCTAGGTTTCCATCCCGTGAGGGCGGTGCTCTTGAC
AGGCATCCTAACGGCTGGGGGTTTGCTCGGGATCATGCAGCAAACCAACC
TCTTGGAGGGTTTCCACCGGGGGGTCCCCCAAACCACCCCCTAGGTTTCC
ATCCCGTGAGGGCGGTGCTCTTGACAGGCATCCTAACGGCTGGGGGTTTG
CTCGGG
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