mRNA_D-dichotoma_M_contig932.20062.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig932.20062.1
Unique NamemRNA_D-dichotoma_M_contig932.20062.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig932.20062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig932contigD-dichotoma_M_contig932:22434..22672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size229
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931173.0326371-CDS-D-dichotoma_M_contig932:22433..225701622931173.0326371-CDS-D-dichotoma_M_contig932:22433..22570Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig932 22434..22570 +
1690799648.326724-CDS-D-dichotoma_M_contig932:22433..225701690799648.326724-CDS-D-dichotoma_M_contig932:22433..22570Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig932 22434..22570 +
1622931173.0562088-CDS-D-dichotoma_M_contig932:22581..226721622931173.0562088-CDS-D-dichotoma_M_contig932:22581..22672Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig932 22582..22672 +
1690799648.3375437-CDS-D-dichotoma_M_contig932:22581..226721690799648.3375437-CDS-D-dichotoma_M_contig932:22581..22672Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig932 22582..22672 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig932.20062.1prot_D-dichotoma_M_contig932.20062.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig932 22434..22672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig932.20062.1

>prot_D-dichotoma_M_contig932.20062.1 ID=prot_D-dichotoma_M_contig932.20062.1|Name=mRNA_D-dichotoma_M_contig932.20062.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=76bp
IARRSVQIWRWQQGYKKTLSSSHEELAAWCAPGHNSPQDYLPLPARQTEG
KPKVCGANKTIIRSVGNLTTGNFSP*
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mRNA from alignment at D-dichotoma_M_contig932:22434..22672+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig932.20062.1 ID=mRNA_D-dichotoma_M_contig932.20062.1|Name=mRNA_D-dichotoma_M_contig932.20062.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=239bp|location=Sequence derived from alignment at D-dichotoma_M_contig932:22434..22672+ (Dictyota dichotoma ODC1387m male)
ATAGCTCGGCGTTCGGTTCAGATTTGGCGCTGGCAGCAAGGCTACAAAAA
GACCCTGAGTTCCTCGCATGAAGAGCTGGCTGCTTGGTGTGCTCCTGGAC
ATAATTCCCCGCAAGACTACCTACCGCTCCCTGCAAGGCAAACCGAAGGC
AAACCGAAGGCAAACCGAAGGTGTGTGGTGCAAACAAGACAATCATACGT
AGTGTGGGAAACCTGACGACAGGAAATTTCTCACCATGA
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig932:22434..22672+

>mRNA_D-dichotoma_M_contig932.20062.1 ID=mRNA_D-dichotoma_M_contig932.20062.1|Name=mRNA_D-dichotoma_M_contig932.20062.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=456bp|location=Sequence derived from alignment at D-dichotoma_M_contig932:22434..22672+ (Dictyota dichotoma ODC1387m male)
ATAGCTCGGCGTTCGGTTCAGATTTGGCGCTGGCAGCAAGGCTACAAAAA
GACCCTGAGTTCCTCGCATGAAGAGCTGGCTGCTTGGTGTGCTCCTGGAC
ATAATTCCCCGCAAGACTACCTACCGCTCCCTGCAAGATAGCTCGGCGTT
CGGTTCAGATTTGGCGCTGGCAGCAAGGCTACAAAAAGACCCTGAGTTCC
TCGCATGAAGAGCTGGCTGCTTGGTGTGCTCCTGGACATAATTCCCCGCA
AGACTACCTACCGCTCCCTGCAAGGCAAACCGAAGGCAAACCGAAGGTGT
GTGGTGCAAACAAGACAATCATACGTAGTGTGGGAAACCTGACGACAGGA
AATTTCTCACCATGAGCAAACCGAAGGCAAACCGAAGGTGTGTGGTGCAA
ACAAGACAATCATACGTAGTGTGGGAAACCTGACGACAGGAAATTTCTCA
CCATGA
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