mRNA_D-dichotoma_M_contig931.20060.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig931.20060.1
Unique NamemRNA_D-dichotoma_M_contig931.20060.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig931.20060.1 vs. uniprot
Match: A0A6H5JHK3_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK3_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 8.560e-15
Identity = 40/76 (52.63%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:   85 RRLNWREHARLSIEEGVFRRKYRMTLPTFRKLIRILGPSLVRDDRFARLRSTSGVIPVESRVAIAIRILAGGSYLD 312
            RRL+W EH R     GVFRR YRM   +F KL  +L P L  +D +AR R+ SG +PV+ R+A+A+R+LAG SYLD
Sbjct:   68 RRLDWEEHVRDIKRRGVFRRMYRMEEHSFNKLAELLRPFLESNDFYARKRTRSGAVPVKIRLAVALRMLAGASYLD 143
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BLAST of mRNA_D-dichotoma_M_contig931.20060.1 vs. uniprot
Match: A0A6H5JMM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMM2_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.620e-14
Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:   85 RRLNWREHARLSIEEGVFRRKYRMTLPTFRKLIRILGPSLVRDDRFARLRSTSGVIPVESRVAIAIRILAGGSYLD 312
            RRL+W EH R     GVFRR YRM   +F KL ++L P L  +D +AR R+ SG +PV+  +A+A+R+LAG SYLD
Sbjct:   68 RRLDWEEHVRDIKRRGVFRRMYRMEEHSFNKLAQLLRPFLESNDFYARKRTGSGAVPVKISLAVALRMLAGASYLD 143
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BLAST of mRNA_D-dichotoma_M_contig931.20060.1 vs. uniprot
Match: A0A6H5JDE6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDE6_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 4.370e-13
Identity = 37/76 (48.68%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:   85 RRLNWREHARLSIEEGVFRRKYRMTLPTFRKLIRILGPSLVRDDRFARLRSTSGVIPVESRVAIAIRILAGGSYLD 312
            RRL+W EH +      +FRR YRM   +F KL  +L P L R+D  ARLR++SG +PV+ R+A+A+R+ AG SY+D
Sbjct:   67 RRLDWEEHVKDVRRRKLFRRMYRMEEHSFDKLAELLRPILERNDYSARLRTSSGAVPVKIRLAVALRMFAGASYID 142
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BLAST of mRNA_D-dichotoma_M_contig931.20060.1 vs. uniprot
Match: A0A6H5JUE6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE6_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 6.010e-13
Identity = 39/76 (51.32%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:   85 RRLNWREHARLSIEEGVFRRKYRMTLPTFRKLIRILGPSLVRDDRFARLRSTSGVIPVESRVAIAIRILAGGSYLD 312
            RRL+W EH R      VFRR YRM    F KL  +L P L R+D +AR R+  G +PV+ R+A+A+RILAG SY+D
Sbjct:   70 RRLDWDEHVRDLRRRKVFRRTYRMEEGCFDKLADLLRPILERNDFYARKRTRHGAVPVKHRLAVALRILAGASYMD 145
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BLAST of mRNA_D-dichotoma_M_contig931.20060.1 vs. uniprot
Match: A0A6H5L386_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L386_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 9.810e-12
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:   88 RLNWREHARLSIEEGVFRRKYRMTLPTFRKLIRILGPSLVRDDRFARLRSTSGVIPVESRVAIAIRILAGGSYLD 312
            RL+W EHA    E   F+R YRM    F KL  +L P L  +  FA LR+ +G I V+ R+A+A+RILAG SYLD
Sbjct:   67 RLDWDEHADDLEERDCFKRMYRMPRHAFEKLAELLAPLLTVNKHFAELRTLNGAISVQIRLAVALRILAGASYLD 141
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BLAST of mRNA_D-dichotoma_M_contig931.20060.1 vs. uniprot
Match: A0A225VE67_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VE67_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 7.910e-9
Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 1 
Query:   76 LTRRRLNWREHARLSIEEGVFRRKYRMTLPTFRKLIRILGPSLVRDDRFARLRSTSGVIPVE--SRVAIAIRILAGGSY 306
            L RRRLNWR H++L + EG FR+ Y M+  ++ KL+R+L PSL R D    LR T G  P+   +++ ++I  LAG S+
Sbjct:   17 LERRRLNWRHHSQLLLNEGQFRQYYMMSFRSYEKLLRLLAPSL-RVDESQSLRRTRGDEPLSPVNKLQMSISWLAGYSF 94
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig931.20060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JHK3_9PHAE8.560e-1552.63DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JMM2_9PHAE1.620e-1451.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDE6_9PHAE4.370e-1348.68DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JUE6_9PHAE6.010e-1351.32DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5L386_9PHAE9.810e-1249.33DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A225VE67_9STRA7.910e-944.30Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig931contigD-dichotoma_M_contig931:256295..257292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size314
Cds size312
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931172.9591627-CDS-D-dichotoma_M_contig931:256294..2565201622931172.9591627-CDS-D-dichotoma_M_contig931:256294..256520Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig931 256295..256520 +
1690799648.3095179-CDS-D-dichotoma_M_contig931:256294..2565201690799648.3095179-CDS-D-dichotoma_M_contig931:256294..256520Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig931 256295..256520 +
1622931172.9810457-CDS-D-dichotoma_M_contig931:257206..2572921622931172.9810457-CDS-D-dichotoma_M_contig931:257206..257292Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig931 257207..257292 +
1690799648.318065-CDS-D-dichotoma_M_contig931:257206..2572921690799648.318065-CDS-D-dichotoma_M_contig931:257206..257292Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig931 257207..257292 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig931.20060.1prot_D-dichotoma_M_contig931.20060.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig931 256295..257292 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig931.20060.1

>prot_D-dichotoma_M_contig931.20060.1 ID=prot_D-dichotoma_M_contig931.20060.1|Name=mRNA_D-dichotoma_M_contig931.20060.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=104bp
MSLTCILSAATAAVQSSRQTKRKRALTRRRLNWREHARLSIEEGVFRRKY
RMTLPTFRKLIRILGPSLVRDDRFARLRSTSGVIPVESRVAIAIRILAGG
SYLD
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mRNA from alignment at D-dichotoma_M_contig931:256295..257292+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig931.20060.1 ID=mRNA_D-dichotoma_M_contig931.20060.1|Name=mRNA_D-dichotoma_M_contig931.20060.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=998bp|location=Sequence derived from alignment at D-dichotoma_M_contig931:256295..257292+ (Dictyota dichotoma ODC1387m male)
ATGAGCCTGACGTGCATCCTAAGTGCGGCGACCGCAGCAGTTCAGAGCTC
AAGACAAACGAAGAGGAAGCGTGCGTTGACACGGCGTCGCCTAAACTGGA
GAGAGCACGCAAGGCTATCCATTGAGGAAGGAGTGTTTCGAAGGAAGTAC
AGGATGACTCTTCCAACTTTCCGAAAATTGATTCGTATCTTGGGACCTTC
TCTTGTACGGGACGATCGCTTTGCAAGTGAGTGTGTATCATGTTCCGGAG
ATTTTGATTGACGTAGTACTGCCATGCACAAAAGGGAGTGAGAGACGTAC
AGTAGTGAATTTTGCTGCCGCCGAGAGCATGTAAAAAACAGTGCTTGTGG
ATTATAACTTGAATGGTTCGCTACGGAATGTTTTACCGTACACGAACGAG
TAGGACCGTACCTTGGGTTTAGGTTTAGGGTATATAGACAAAGGTGAAGG
GCTTCGTTGAATGTTGACGACTGAACGATTTGCTGCGTACCCCTCTCGAA
ATATCTAAGTGCAGTTGGAATGTTCTGGTGCTCTTTGGGTTGGACGCAAG
ATGAACGTTCATCATGGAGAACGCATTGAAGAGGAATCGTATCACAAACG
ACAAGGACCTCGAGTTAGACGGAGTACGGTGACGAAGAATGCCCTTCGAT
TCCTGGGTCCATTCATGATGCATCGTCCGTAATTCTCACCGCGTATCGTT
GAACTGATATTCTTGATGTTGAAGTTTGAGACGCACCAAGTGTTGAAATC
CACAATATGTCGACAGGCATTATGACTAGTCGTTGTGCAGGATATGATAT
GCCGAGCATGAAGTGAGCCTTAAACATGCGGTGTGTTCCGGGACGACGAT
TACATATGACACGACACATATCCATCCTCTTTGTCATGCATCTGCATCGT
TTCTCGTCGCAGGACTTCGGAGCACCTCAGGCGTGATACCCGTAGAAAGT
CGAGTTGCCATCGCTATTCGTATACTGGCCGGGGGTTCATATCTGGAC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig931:256295..257292+

>mRNA_D-dichotoma_M_contig931.20060.1 ID=mRNA_D-dichotoma_M_contig931.20060.1|Name=mRNA_D-dichotoma_M_contig931.20060.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=624bp|location=Sequence derived from alignment at D-dichotoma_M_contig931:256295..257292+ (Dictyota dichotoma ODC1387m male)
ATGAGCCTGACGTGCATCCTAAGTGCGGCGACCGCAGCAGTTCAGAGCTC
AAGACAAACGAAGAGGAAGCGTGCGTTGACACGGCGTCGCCTAAACTGGA
GAGAGCACGCAAGGCTATCCATTGAGGAAGGAGTGTTTCGAAGGAAGTAC
AGGATGACTCTTCCAACTTTCCGAAAATTGATTCGTATCTTGGGACCTTC
TCTTGTACGGGACGATCGCTTTGCAAATGAGCCTGACGTGCATCCTAAGT
GCGGCGACCGCAGCAGTTCAGAGCTCAAGACAAACGAAGAGGAAGCGTGC
GTTGACACGGCGTCGCCTAAACTGGAGAGAGCACGCAAGGCTATCCATTG
AGGAAGGAGTGTTTCGAAGGAAGTACAGGATGACTCTTCCAACTTTCCGA
AAATTGATTCGTATCTTGGGACCTTCTCTTGTACGGGACGATCGCTTTGC
AAGACTTCGGAGCACCTCAGGCGTGATACCCGTAGAAAGTCGAGTTGCCA
TCGCTATTCGTATACTGGCCGGGGGTTCATATCTGGACGACTTCGGAGCA
CCTCAGGCGTGATACCCGTAGAAAGTCGAGTTGCCATCGCTATTCGTATA
CTGGCCGGGGGTTCATATCTGGAC
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