mRNA_D-dichotoma_M_contig93.20049.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig93.20049.1
Unique NamemRNA_D-dichotoma_M_contig93.20049.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig93.20049.1 vs. uniprot
Match: D7FGX1_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX1_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 1.380e-47
Identity = 86/141 (60.99%), Postives = 108/141 (76.60%), Query Frame = 1 
Query:   10 STAATKIQKVFRGSKVMGWTDIRLNKVAQHVFMRQELEFQERVDGGQERYRKLVEEASRDPCSDDDEEQDPRDCWHEVWDGGNQRSYWWNPFLEKASLYNPMQSAESLVGVPVLVTR--AKGISGQGQITRLNRKRMKHRV 426
            S AA KIQKVFRG +VM W D+RLNKVAQHVFMRQE+EFQER+DGG+ RY+ LV+EA RD CS+DD+E D  D W E+WD G   SYWWN  L ++S   P+   E LVG+ V +TR  + G++G+GQ+TRLNRKR+KHR+
Sbjct:  426 SRAARKIQKVFRGGRVMSWRDVRLNKVAQHVFMRQEMEFQERLDGGRARYQHLVDEAGRDSCSEDDDEADATDHWEEIWDEGADHSYWWNAALRESSPVKPLAFEEGLVGMRVWLTRPTSAGLAGEGQLTRLNRKRVKHRL 566
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BLAST of mRNA_D-dichotoma_M_contig93.20049.1 vs. uniprot
Match: A0A6H5JAN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAN1_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 2.640e-47
Identity = 80/133 (60.15%), Postives = 101/133 (75.94%), Query Frame = 1 
Query:   10 STAATKIQKVFRGSKVMGWTDIRLNKVAQHVFMRQELEFQERVDGGQERYRKLVEEASRDPCSDDDEEQDPRDCWHEVWDGGNQRSYWWNPFLEKASLYNPMQSAESLVGVPVLVTR--AKGISGQGQITRLN 402
            S AA KIQKVFRGS+VM W D+RLNKVAQHVFMRQE+EFQER+DGG+ RY+ LV+EA RD CS+DD+E D  D W E+WD G   SYWWN  L ++S   P+   E LVG+ V +TR  + G++G+GQ+TRL+
Sbjct:   47 SRAARKIQKVFRGSRVMSWRDVRLNKVAQHVFMRQEMEFQERLDGGRARYQHLVDEAGRDSCSEDDDEADATDHWEEIWDEGADHSYWWNAALRESSPVKPLAFEEGLVGMRVWLTRPTSAGLAGEGQLTRLS 179
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BLAST of mRNA_D-dichotoma_M_contig93.20049.1 vs. uniprot
Match: A0A836CJ55_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ55_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.450e-8
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:   22 TKIQKVFRGSKVMGWTDIRLNKVAQHVFMRQELEFQERVDGGQERYRKLVEEASRDPCSDD 204
            T IQ+VFR S+V+GW D+R+N+V  HV  RQELE+ ER      R  + + EA+ D C DD
Sbjct:  598 TAIQRVFRSSRVLGWRDVRMNRVTLHVLRRQELEYAERAALAARRDERRIMEANHDACDDD 658
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BLAST of mRNA_D-dichotoma_M_contig93.20049.1 vs. uniprot
Match: A0A7S3HAT1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HAT1_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.650e-6
Identity = 44/144 (30.56%), Postives = 74/144 (51.39%), Query Frame = 1 
Query:   16 AATKIQKVFRGSKVMGWTDIRLNKVAQHVFMRQELEFQERVDGGQERYRKLVEEASRDPCSDDDEEQDPRDCWHEVWDGGNQRSYWWNPFLEKASLYNPMQSAESLVGVPVLV-TRAK------GISGQGQITRLNRKRMKHRV 426
            AA  IQ+++RG++V+ W D+RLN +A  V  R  +E +  +   + RY++ + +  RD  S+ D+E+   + W + +D    R Y+W  F      Y+  +  E L     LV TR K           G IT+ +R++ +HRV
Sbjct:  377 AARDIQRIYRGTRVLHWRDMRLNVIAAFVLDRHYVERKSSIAATRLRYKQFILDNQRDSASEPDDEEIAEE-WLKTYDSAR-RCYYWQNFATNVITYD--EPEEELAHEKNLVNTRIKVYWVVQDCWYGGIITKYHRRKRRHRV 516
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig93.20049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FGX1_ECTSI1.380e-4760.99Hypothetical leucine rich repeat calmodulin bindin... [more]
A0A6H5JAN1_9PHAE2.640e-4760.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CJ55_9STRA1.450e-849.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3HAT1_9STRA3.650e-630.56Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig93contigD-dichotoma_M_contig93:659705..661490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.0
Seed ortholog evalue1.2e-41
Seed eggNOG ortholog2880.D7FGX1
Preferred nameC2orf69
GOsGO:0007154,GO:0007267,GO:0008150,GO:0009987,GO:0023052,GO:0030154,GO:0032502,GO:0045165,GO:0045168,GO:0046331,GO:0048869
EggNOG free text desc.Uncharacterised protein family UPF0565
EggNOG OGsKOG2800@1,KOG2800@2759,KOG4341@1,KOG4341@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat calmodulin binding protein
Ec32 orthologEc-11_000955.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size427
Cds size426
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig93.20049.1prot_D-dichotoma_M_contig93.20049.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig93 659705..661490 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931170.7118611-CDS-D-dichotoma_M_contig93:659704..6597401622931170.7118611-CDS-D-dichotoma_M_contig93:659704..659740Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig93 659705..659740 +
1690799647.2103915-CDS-D-dichotoma_M_contig93:659704..6597401690799647.2103915-CDS-D-dichotoma_M_contig93:659704..659740Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig93 659705..659740 +
1622931170.725368-CDS-D-dichotoma_M_contig93:659875..6600241622931170.725368-CDS-D-dichotoma_M_contig93:659875..660024Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig93 659876..660024 +
1690799647.2366095-CDS-D-dichotoma_M_contig93:659875..6600241690799647.2366095-CDS-D-dichotoma_M_contig93:659875..660024Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig93 659876..660024 +
1622931170.7381687-CDS-D-dichotoma_M_contig93:660248..6603031622931170.7381687-CDS-D-dichotoma_M_contig93:660248..660303Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig93 660249..660303 +
1690799647.251034-CDS-D-dichotoma_M_contig93:660248..6603031690799647.251034-CDS-D-dichotoma_M_contig93:660248..660303Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig93 660249..660303 +
1622931170.758824-CDS-D-dichotoma_M_contig93:660941..6610961622931170.758824-CDS-D-dichotoma_M_contig93:660941..661096Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig93 660942..661096 +
1690799647.2688296-CDS-D-dichotoma_M_contig93:660941..6610961690799647.2688296-CDS-D-dichotoma_M_contig93:660941..661096Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig93 660942..661096 +
1622931170.7749805-CDS-D-dichotoma_M_contig93:661459..6614901622931170.7749805-CDS-D-dichotoma_M_contig93:661459..661490Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig93 661460..661490 +
1690799647.2782006-CDS-D-dichotoma_M_contig93:661459..6614901690799647.2782006-CDS-D-dichotoma_M_contig93:661459..661490Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig93 661460..661490 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig93.20049.1

>prot_D-dichotoma_M_contig93.20049.1 ID=prot_D-dichotoma_M_contig93.20049.1|Name=mRNA_D-dichotoma_M_contig93.20049.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=142bp
MAESTAATKIQKVFRGSKVMGWTDIRLNKVAQHVFMRQELEFQERVDGGQ
ERYRKLVEEASRDPCSDDDEEQDPRDCWHEVWDGGNQRSYWWNPFLEKAS
LYNPMQSAESLVGVPVLVTRAKGISGQGQITRLNRKRMKHRV
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mRNA from alignment at D-dichotoma_M_contig93:659705..661490+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig93.20049.1 ID=mRNA_D-dichotoma_M_contig93.20049.1|Name=mRNA_D-dichotoma_M_contig93.20049.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=1786bp|location=Sequence derived from alignment at D-dichotoma_M_contig93:659705..661490+ (Dictyota dichotoma ODC1387m male)
ATGGCCGAGAGCACCGCTGCGACCAAGATCCAGAAGGCGAGGGGGGTGAA
CCGTGGACCGAGAACACTTTTGATTGACTTCGAACCGCTTTTTTTGCACC
TCCTCGCCTACCGTTCCCTCCTACCAATCAATAATTGTTCTTCAATTTTC
CCCCTCGTCCATATGCTGTAGGTGTTCCGGGGAAGCAAGGTCATGGGTTG
GACAGACATACGCCTTAATAAGGTAGCTCAGCACGTCTTCATGCGCCAAG
AACTGGAGTTCCAAGAGAGGGTCGATGGTGGCCAGGAACGTTACCGGAAA
CTTGTTGAAGAAGCGAGCAGGTAATAACTGGGAAGGGTACCCGATTATTG
TAGCCGTCACTCGCGCATCATAGGCCCGCTGTGCTCTACCATCCACGCGT
TCGTCTATATCCATCCATGAATCGCGAATAAATCGATCCGCCATCATACC
TTGCCCCCGTCTGCGTTACCCCCTTTCCCGCCTCCGTGTGGTGGGAACTC
CGTGGTCCCCGCAACATTTGGTCGCCGTGCTCCGGGAACACTAGAGATCC
TTGCAGTGATGACGACGAGGAGCAGGATCCAAGGGATTGCTGGCACGAGG
TACGAAGGAGGCGGGTGCGTTGTTTCCGTATCGTCCGCCGGACGCCATGA
TTCTTTGGTTTCGACGACCTCTTTGTCACGGAGGCTGTCGTTAACTGAAG
ATATACATGGCACATGCAAGGCGTCCAGCATATTTTGCTGTCATATCATC
TCGTTGGCGTAGCACGCGATAGGTCTCCTGCCTGGACCCACACCCTCCCC
ACGCGGCTTCTCAGCGATTGTTATGTACGTAGCTGAGAAACTTCGGTGAA
GCCTTCGCTTTACGCGTGATATCATGCCAGAACACCTGTAGAAATTGGGA
CGTCCGTGTAACGCTCGCACTCGATGTGGTGGGCGGAATCACAGATGTTG
GTTGGAGACTGTCATAGTGGTGGCGTTGTCCGGGACTAAGGCGGAGTCTT
CTTTAGCGAGGAGGAACGAACGCGATTATCATCGAAGCTTTGATTCCGCT
CCTACAGAACCGACTTTACAACGGCTCGATTCCTTTCAACCACTCACGCA
CAAACGACGTATCCTATGACGATGGTGCAGGGAGGATGATCGTGCAATGT
CATGTTGTAGCCCACTGGCGGGCTCGATCAAATTCGTCTTCAAGGAACAA
TACGATCGATGTTTTGGGGGGTAATTGTCTACGCAAGGTGTGGGACGGTG
GAAATCAACGCAGCTATTGGTGGAATCCATTCCTCGAGAAGGCCTCCCTC
TACAACCCCATGCAGTCCGCCGAATCCCTCGTGGGCGTTCCAGTTTTGGT
GACGCGCGCCAAAGGCATATCTGGTCAGGGGCAGATCACACGGTGAGAGA
CCCTCCGGACGGCTCGAGCGGGTGTGGAAAAAAAAACTTCTTTCGTCTCG
GGTGCGAAGGAAAAACGCGGGTAGTCCATAATATACAGGCGATATACGAC
ACGGTGTGGAAGTCAGCGTCTTCCCCCTCGGACCGATGGGCAGTGTAATC
CGTTCAAGGGCAAACGAAAGAGAATGATGGGCCAACTTGAGTTTGCCGTC
GTCCCCTGCCTCGTTTGGTCGATCATCAGGGTTTATTCCTTGATCGAGAA
GGACCTGATAGTGTCATGTTTCTCAATGTGCTGGCATAGTCTCGCTCCCA
TGCAGCCCGCAACACGACGGCGTGCCGCGGTGCTCCCACGCGTCTGTTTG
ATCAGGCTGAATCGTAAGAGAATGAAACATCGGGTG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig93:659705..661490+

>mRNA_D-dichotoma_M_contig93.20049.1 ID=mRNA_D-dichotoma_M_contig93.20049.1|Name=mRNA_D-dichotoma_M_contig93.20049.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=852bp|location=Sequence derived from alignment at D-dichotoma_M_contig93:659705..661490+ (Dictyota dichotoma ODC1387m male)
ATGGCCGAGAGCACCGCTGCGACCAAGATCCAGAAGATGGCCGAGAGCAC
CGCTGCGACCAAGATCCAGAAGGTGTTCCGGGGAAGCAAGGTCATGGGTT
GGACAGACATACGCCTTAATAAGGTAGCTCAGCACGTCTTCATGCGCCAA
GAACTGGAGTTCCAAGAGAGGGTCGATGGTGGCCAGGAACGTTACCGGAA
ACTTGTTGAAGAAGCGAGCAGGTGTTCCGGGGAAGCAAGGTCATGGGTTG
GACAGACATACGCCTTAATAAGGTAGCTCAGCACGTCTTCATGCGCCAAG
AACTGGAGTTCCAAGAGAGGGTCGATGGTGGCCAGGAACGTTACCGGAAA
CTTGTTGAAGAAGCGAGCAGAGATCCTTGCAGTGATGACGACGAGGAGCA
GGATCCAAGGGATTGCTGGCACGAGAGATCCTTGCAGTGATGACGACGAG
GAGCAGGATCCAAGGGATTGCTGGCACGAGGTGTGGGACGGTGGAAATCA
ACGCAGCTATTGGTGGAATCCATTCCTCGAGAAGGCCTCCCTCTACAACC
CCATGCAGTCCGCCGAATCCCTCGTGGGCGTTCCAGTTTTGGTGACGCGC
GCCAAAGGCATATCTGGTCAGGGGCAGATCACACGGTGTGGGACGGTGGA
AATCAACGCAGCTATTGGTGGAATCCATTCCTCGAGAAGGCCTCCCTCTA
CAACCCCATGCAGTCCGCCGAATCCCTCGTGGGCGTTCCAGTTTTGGTGA
CGCGCGCCAAAGGCATATCTGGTCAGGGGCAGATCACACGGCTGAATCGT
AAGAGAATGAAACATCGGGTGGCTGAATCGTAAGAGAATGAAACATCGGG
TG
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