mRNA_D-dichotoma_M_contig93.20041.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig93.20041.1
Unique NamemRNA_D-dichotoma_M_contig93.20041.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
BLAST of mRNA_D-dichotoma_M_contig93.20041.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 258 bits (659), Expect = 3.160e-83
Identity = 125/185 (67.57%), Postives = 143/185 (77.30%), Query Frame = 1
Query:    1 IKPSLFDAQKKRRIDFICDQVDETAGDYLDMGNVIHLDKSWFFLLRDKEKVRMFPGEEIPRSPRVQHKGHLPKIMVIAANGRPDPSHDFDGKIGIWRICVMKPPKRSSKK-------------------RKRG----EEYEFDCTIDAEWYKTWYIDQLLPAIKKKMPWLRSKRVVVQQDGASPH 486
            IKPSL DAQK+ R+DFI D+VDE  G+YLD GNV+HLD+SWF+L+R+KEKVR+F GE++P  PRV H+ HLPKIMVI AN RPDP+HDFDGKIGIWRICV++  +RSSKK                   R R     EEYEFDCTIDAEWYK WYID LLPAIK+KMPWLRSKRVVVQQDGASPH
Sbjct:  121 IKPSLSDAQKRHRMDFISDRVDEPIGEYLDQGNVVHLDESWFYLMREKEKVRVFSGEDVPGPPRVPHESHLPKIMVIVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPH 305          
BLAST of mRNA_D-dichotoma_M_contig93.20041.1 vs. uniprot
Match: A0A6G0WM27_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WM27_9STRA)

HSP 1 Score: 108 bits (269), Expect = 4.350e-25
Identity = 57/168 (33.93%), Postives = 94/168 (55.95%), Query Frame = 1
Query:    1 IKPSLFDAQKKRRIDFICDQVDETAGDYLDMGNVIHLDKSWFFLLRDKEKVRMFPGEEIPRSPRVQHKGHLPKIMVIAANGRPDPSHD------FDGKIGIWRICVMKPPKRSSKKRKRGEEYEFDCTIDAEWYKTWYIDQLLPAIKKKMPWLRSKRVVVQQDGASPH 486
            ++P L +   K R++F    V E   +++DM NV+H+D+ WF L +   K  ++  EE+P     + K  + K+M +AA  RP   HD      FDGK+G+W   + +P KR+SK R R        ++ +E Y    +  +LPAIK+KM ++++ ++ +QQD A PH
Sbjct:  146 LRPLLTEVNMKARLEFAMSFVKEDR-EFVDMHNVVHVDEKWFDLTKVNGKFYVYDDEELPLR-ATKSKNFITKVMFLAAVARP--RHDEATNQFFDGKLGMWPFVIQEPAKRTSKNRARDTLISTPISVTSEVYFDMLVSNVLPAIKRKMSFMKNSKIFIQQDNAGPH 309          
BLAST of mRNA_D-dichotoma_M_contig93.20041.1 vs. uniprot
Match: W4GR72_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GR72_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.420e-23
Identity = 56/140 (40.00%), Postives = 84/140 (60.00%), Query Frame = 1
Query:   82 YLDMGNVIHLDKSWFFLLRDKEKVRMFPGEEIPRSPRVQHKGHLPKIMVIAANGRP----DPSHDFDGKIGIWRICVMKPPKRSSKKRKRGEEYEFDCTIDAEWYKTWYIDQLLPAIKKKMPWLRSKRVVVQQDGASPHM 489
            + D+ +++HLD+ WF   +D+ KV +  GE  P+    + K  +PK M +AA  RP    D + DF+GKIG+W+   M P  RSS+ R  G        +D   Y+ + ++ +LPAIK KMP + SKRV++QQD A+PHM
Sbjct:   35 FSDIIDIVHLDEKWFNADKDRRKVYLTKGET-PKGRACKSKRFIPKFMFLAAVARPQFDADGNLDFEGKIGMWQFITMMPAARSSRNRSGGTLVATLVNVDPAVYQDFVLNLVLPAIKAKMPSV-SKRVMLQQDNATPHM 172          
BLAST of mRNA_D-dichotoma_M_contig93.20041.1 vs. uniprot
Match: A0A3L6VGG5_9STRA (HTH_Tnp_Tc3_2 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VGG5_9STRA)

HSP 1 Score: 100 bits (250), Expect = 4.880e-23
Identity = 63/174 (36.21%), Postives = 96/174 (55.17%), Query Frame = 1
Query:    1 IKPSLFDAQKKRRIDFICDQV-------DETAGDYLDMGNVIHLDKSWFFLLRDKEKVRMFPGEEIPRSPR-VQHKGHLPKIMVIAANGRP--DPSHD--FDGKIGIWRICVMKPPKRSSKKRKRGEEYEFDCTIDAEWYKTWYIDQLLPAIKKKMPWLRSKRVVVQQDGASPH 486
            +KP L  A    R+ F    V       D+ + ++ DM N++HLD+ WF   +D+ KV M  GEE+P  PR  + K  +PK+M++AA  RP  D S +  FDGKIG W      P +R+S+ R  G        + A+ Y  + +D+++PA+KKK P+   + +V Q D A+PH
Sbjct:   69 LKPLLTAANMADRVRFCLSHVRVPVVPVDDGSLEFDDMTNIVHLDEKWFNADKDRRKVYMTEGEELP--PRSCKSKRFIPKVMLLAAVMRPQWDSSGNCIFDGKIGFWAFTEQVPAQRNSRNRPAGTLVTKCVNVTADVYHRFVMDKVIPAVKKKWPF-SDRNIVFQHDNATPH 239          
BLAST of mRNA_D-dichotoma_M_contig93.20041.1 vs. uniprot
Match: A0A485K9W7_9STRA (Aste57867_2336 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K9W7_9STRA)

HSP 1 Score: 100 bits (250), Expect = 5.920e-23
Identity = 57/166 (34.34%), Postives = 90/166 (54.22%), Query Frame = 1
Query:    1 IKPSLFDAQKKRRIDFICDQVDETAGDY---LDMGNVIHLDKSWFFLLRDKEKVRMFPGEEIPRSPRVQHKGHLPKIMVIAANGRPD----PSHDFDGKIGIWRICVMKPPKRSSKKRKRGEEYEFDCTIDAEWYKTWYIDQLLPAIKKKMPWLRSKRVVVQQDGA 477
            +K  L +A +  R+D+    V  T+  Y    +M + +H+D+ WFFL + K +  +F  EE+  S  VQ KGH+ K++ +AA  RP         FDGK+G+W    ++P + SS+ R RG       ++  E YK   +  ++ AIK KMP  RS+ + +QQD A
Sbjct:   23 VKTHLTEAHRAARLDYAISFVRRTSNGYHIFTNMYDHVHVDEKWFFLTKVKRRYYVFDNEEVA-SRAVQSKGHITKVLFLAAIARPRYDCRSKRFFDGKLGVWPFVKVEPAQCSSENRPRGTPIMSPKSVTGEVYKDMILKNVVAAIKAKMPGARSRTISIQQDNA 187          
BLAST of mRNA_D-dichotoma_M_contig93.20041.1 vs. uniprot
Match: A0A397E5D7_9STRA (HTH_Tnp_Tc3_2 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E5D7_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.780e-22
Identity = 68/193 (35.23%), Postives = 96/193 (49.74%), Query Frame = 1
Query:    1 IKPSLFDAQKKRRIDFICDQVDETA---------------GD-----------YLDMGNVIHLDKSWFFLLRDKEKVRMFPGEEIPRSPRVQHKGHLPKIMVIAANGRPDPSHD----FDGKIGIWRICVMKPPKRSSKKRKRGEEYEFDCTIDAEWYKTWYIDQLLPAIKKKMPWLRSKRVVVQQDGASPHM 489
            +KP L DA +  R+ F    V   A               GD           + DM +V+HLD+ WF   +D+ KV +  GE  P+    + K  +PK+M +AA  RP    D    FDGKIG+W    M P  RSS+ R  G        ++A  Y+ + ++ +LPAIK KMP +  KRV++QQD A+PHM
Sbjct:  127 LKPMLTDANRAERVGFCRSHVRRIAATSLAEAAATVTAFGGDSGYGSALVELPFSDMIDVVHLDEKWFNADKDRRKVYLTKGET-PKGRACKSKRFIPKVMFLAAVARPQFDADGNLVFDGKIGMWPFITMTPAARSSRNRSAGTLVATLVNVNAAVYQDFVLNLVLPAIKAKMPSV-CKRVMLQQDNATPHM 317          
BLAST of mRNA_D-dichotoma_M_contig93.20041.1 vs. uniprot
Match: W4FY68_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FY68_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 3.500e-21
Identity = 57/170 (33.53%), Postives = 91/170 (53.53%), Query Frame = 1
Query:    1 IKPSLFDAQKKRRIDFICDQVDETAG---DYLDMGNVIHLDKSWFFLLRDKEKVRMFPGEEIPRSPRVQHKGHLPKIMVIAANGRPDPSHD----FDGKIGIWRICVMKPPKRSSKKRKRGEEYEFDCTIDAEWYKTWYIDQLLPAIKKKMPWLRSKRVVVQQDGASPHM 489
            +KP+L +A K  R+ +  D V   A    ++ DM + +H+D+  FF    K+   + PGEE P     + K H+ K+M ++A  RP   ++    FDGKIG+W+     P KR+S++R  G       ++    YK   ID ++P IK   P   S+R+++QQD A PH+
Sbjct:  513 VKPALTEANKIVRLKWALDSVQTNAAGGFNFSDMMDTVHVDEKMFFATCVKKTFYLAPGEEPPHR-TAKSKRHIIKVMFLSAVARPRWDYEKNQWFDGKIGMWQFTEWVPAKRTSRRRVAGTMVMTPVSVTHAVYKAMLIDHVIPTIKALWPKHESRRIMIQQDNARPHV 681          
BLAST of mRNA_D-dichotoma_M_contig93.20041.1 vs. uniprot
Match: A0A6A4YX26_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YX26_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 8.230e-21
Identity = 55/137 (40.15%), Postives = 79/137 (57.66%), Query Frame = 1
Query:   91 MGNVIHLDKSWFFLLRDKEKVRMFPGEEIPRSPRVQHKGHLPKIMVIAANGRPDPSHD----FDGKIGIWRICVMKPPKRSSKKRKRGEEYEFDCTIDAEWYKTWYIDQLLPAIKKKMPWLRSKRVVVQQDGASPHM 489
            M +V+HLD+ WF   +D  KV +  GE  P+    + K  +PK+M +AA  RP  + D    FDGKIG+W    M P  RSS+    G        ++A  Y+ + ++ +LPAIK KMP +  KRV++QQD A+PHM
Sbjct:    1 MIDVVHLDEKWFNADKDLRKVYLTKGET-PKGRACKSKRFIPKVMFLAAVARPQFNADGNLVFDGKIGMWPFITMTPAARSSRNCSAGRLVATLVNLNAAVYQDFVLNLVLPAIKAKMPSV-CKRVMLQQDNATPHM 135          
BLAST of mRNA_D-dichotoma_M_contig93.20041.1 vs. uniprot
Match: A0A484KD73_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484KD73_9ASTE)

HSP 1 Score: 93.6 bits (231), Expect = 2.790e-19
Identity = 62/172 (36.05%), Postives = 91/172 (52.91%), Query Frame = 1
Query:    1 IKPSLFDAQKKRRIDFICDQVDETA----GDYLDMGNVIHLDKSWFFLLRDKEKVRMFPGEEIPRSPRVQHKGHLPKIMVIAANGRPDPSHD----FDGKIGIWRICVMKPPKRSSKKRKRGE-EYEFDCTIDAEWYKTWYIDQLLPAIKKKMPWLRSKRVVVQQDGASPHM 489
            IKP L +  K +R+ +  D +   +      +    + IH+D+ WF + ++K      P E  P     Q K H+PKIM +AA GRP   +D    +DGKIGI+        KRSSK R  G  E +   TI+ +  K   +++LLPAIK+K P  R + V++QQD A PH+
Sbjct:  176 IKPFLCEKGKLKRLKYCLDHITAPSIPINPTFHHFYDYIHIDEKWFNITKEKTTFYALPEEPDPYR-TAQSKAHIPKIMFLAAVGRPRFGNDGAVLWDGKIGIFPFTFEAETKRSSKNRPAGTLEVKATTTINRDEMKKMLLEKLLPAIKEKWPGPR-RDVIIQQDNAKPHV 345          
BLAST of mRNA_D-dichotoma_M_contig93.20041.1 vs. uniprot
Match: A0A484KDD7_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484KDD7_9ASTE)

HSP 1 Score: 93.6 bits (231), Expect = 2.790e-19
Identity = 66/175 (37.71%), Postives = 90/175 (51.43%), Query Frame = 1
Query:    1 IKPSLFDAQKKRRIDFICDQV-------DETAGDYLDMGNVIHLDKSWFFLLRDKEKVRMFPGEEIPRSPRVQHKGHLPKIMVIAANGRPDPSHD----FDGKIGIWRICVMKPPKRSSKKRKRGE-EYEFDCTIDAEWYKTWYIDQLLPAIKKKMPWLRSKRVVVQQDGASPHM 489
            IKP L    K +R+ F  D +       D T  ++ D    IH+D+ WF + ++K      P EE P    +Q K H+PKIM +AA GRP    D    +DGKIGI+    +   KR+SK R  G  E +    ID    K   I + LPAIK+K P   +K V++QQD A PH+
Sbjct:  176 IKPYLSHPGKLKRLSFCLDHISPSSLPLDPTFHNFYDY---IHIDEKWFNITKEKATFYALPEEEDPHR-TIQSKTHIPKIMFLAAVGRPRYGADGGLLWDGKIGIFPFTYLAEAKRASKNRPAGTLEVKAVPVIDRVVMKNILIQKHLPAIKEKWPG-PTKHVIIQQDNAKPHV 345          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig93.20041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE3.160e-8367.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6G0WM27_9STRA4.350e-2533.93Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]
W4GR72_9STRA2.420e-2340.00Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A3L6VGG5_9STRA4.880e-2336.21HTH_Tnp_Tc3_2 domain-containing protein n=1 Tax=Ap... [more]
A0A485K9W7_9STRA5.920e-2334.34Aste57867_2336 protein n=1 Tax=Aphanomyces stellat... [more]
A0A397E5D7_9STRA2.780e-2235.23HTH_Tnp_Tc3_2 domain-containing protein n=2 Tax=Ap... [more]
W4FY68_9STRA3.500e-2133.53Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A6A4YX26_9STRA8.230e-2140.15Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A484KD73_9ASTE2.790e-1936.05Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
A0A484KDD7_9ASTE2.790e-1937.71Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig93contigD-dichotoma_M_contig93:238855..239343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue1.8e-20
Seed eggNOG ortholog157072.XP_008866696.1
EggNOG OGs2CMKC@1,2QQNW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size489
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931168.9726396-CDS-D-dichotoma_M_contig93:238854..2393431622931168.9726396-CDS-D-dichotoma_M_contig93:238854..239343Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig93 238855..239343 +
1690799646.3219497-CDS-D-dichotoma_M_contig93:238854..2393431690799646.3219497-CDS-D-dichotoma_M_contig93:238854..239343Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig93 238855..239343 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig93.20041.1prot_D-dichotoma_M_contig93.20041.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig93 238855..239343 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig93.20041.1

>prot_D-dichotoma_M_contig93.20041.1 ID=prot_D-dichotoma_M_contig93.20041.1|Name=mRNA_D-dichotoma_M_contig93.20041.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=163bp
IKPSLFDAQKKRRIDFICDQVDETAGDYLDMGNVIHLDKSWFFLLRDKEK
VRMFPGEEIPRSPRVQHKGHLPKIMVIAANGRPDPSHDFDGKIGIWRICV
MKPPKRSSKKRKRGEEYEFDCTIDAEWYKTWYIDQLLPAIKKKMPWLRSK
RVVVQQDGASPHM
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mRNA from alignment at D-dichotoma_M_contig93:238855..239343+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig93.20041.1 ID=mRNA_D-dichotoma_M_contig93.20041.1|Name=mRNA_D-dichotoma_M_contig93.20041.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=489bp|location=Sequence derived from alignment at D-dichotoma_M_contig93:238855..239343+ (Dictyota dichotoma ODC1387m male)
ATAAAGCCGTCGCTTTTTGATGCCCAGAAGAAGCGCCGGATCGATTTCAT CTGCGATCAGGTGGACGAGACGGCCGGGGACTACCTCGACATGGGAAATG TCATCCACCTGGACAAAAGCTGGTTTTTCCTTCTGAGGGACAAGGAGAAG GTTCGAATGTTCCCAGGCGAGGAAATCCCCCGGTCTCCCCGCGTTCAACA CAAGGGCCACCTTCCGAAGATCATGGTGATCGCGGCAAACGGTCGGCCGG ACCCAAGCCACGACTTCGACGGCAAGATCGGCATCTGGCGCATTTGTGTC ATGAAACCCCCCAAGCGATCGTCCAAGAAGCGGAAGAGGGGGGAGGAGTA CGAGTTCGACTGCACCATCGACGCGGAGTGGTACAAGACGTGGTACATCG ACCAACTCCTGCCTGCGATCAAGAAAAAGATGCCGTGGCTGCGTTCAAAG CGCGTAGTAGTGCAGCAGGACGGCGCGAGCCCCCACATG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig93:238855..239343+

>mRNA_D-dichotoma_M_contig93.20041.1 ID=mRNA_D-dichotoma_M_contig93.20041.1|Name=mRNA_D-dichotoma_M_contig93.20041.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=978bp|location=Sequence derived from alignment at D-dichotoma_M_contig93:238855..239343+ (Dictyota dichotoma ODC1387m male)
ATAAAGCCGTCGCTTTTTGATGCCCAGAAGAAGCGCCGGATCGATTTCAT
CTGCGATCAGGTGGACGAGACGGCCGGGGACTACCTCGACATGGGAAATG
TCATCCACCTGGACAAAAGCTGGTTTTTCCTTCTGAGGGACAAGGAGAAG
GTTCGAATGTTCCCAGGCGAGGAAATCCCCCGGTCTCCCCGCGTTCAACA
CAAGGGCCACCTTCCGAAGATCATGGTGATCGCGGCAAACGGTCGGCCGG
ACCCAAGCCACGACTTCGACGGCAAGATCGGCATCTGGCGCATTTGTGTC
ATGAAACCCCCCAAGCGATCGTCCAAGAAGCGGAAGAGGGGGGAGGAGTA
CGAGTTCGACTGCACCATCGACGCGGAGTGGTACAAGACGTGGTACATCG
ACCAACTCCTGCCTGCGATCAAGAAAAAGATGCCGTGGCTGCGTTCAAAG
CGCGTAGTAGTGCAGCAGGACGGCGCGAGCCCCCACATGATAAAGCCGTC
GCTTTTTGATGCCCAGAAGAAGCGCCGGATCGATTTCATCTGCGATCAGG
TGGACGAGACGGCCGGGGACTACCTCGACATGGGAAATGTCATCCACCTG
GACAAAAGCTGGTTTTTCCTTCTGAGGGACAAGGAGAAGGTTCGAATGTT
CCCAGGCGAGGAAATCCCCCGGTCTCCCCGCGTTCAACACAAGGGCCACC
TTCCGAAGATCATGGTGATCGCGGCAAACGGTCGGCCGGACCCAAGCCAC
GACTTCGACGGCAAGATCGGCATCTGGCGCATTTGTGTCATGAAACCCCC
CAAGCGATCGTCCAAGAAGCGGAAGAGGGGGGAGGAGTACGAGTTCGACT
GCACCATCGACGCGGAGTGGTACAAGACGTGGTACATCGACCAACTCCTG
CCTGCGATCAAGAAAAAGATGCCGTGGCTGCGTTCAAAGCGCGTAGTAGT
GCAGCAGGACGGCGCGAGCCCCCACATG
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