mRNA_D-dichotoma_M_contig923.19968.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig923.19968.1
Unique NamemRNA_D-dichotoma_M_contig923.19968.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig923.19968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig923contigD-dichotoma_M_contig923:36199..36851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size653
Cds size486
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig923.19968.1prot_D-dichotoma_M_contig923.19968.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig923 36288..36773 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931155.7823336-UTR-D-dichotoma_M_contig923:36198..362871622931155.7823336-UTR-D-dichotoma_M_contig923:36198..36287Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig923 36199..36287 +
1690799640.1598327-UTR-D-dichotoma_M_contig923:36198..362871690799640.1598327-UTR-D-dichotoma_M_contig923:36198..36287Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig923 36199..36287 +
1622931155.8207815-UTR-D-dichotoma_M_contig923:36773..368511622931155.8207815-UTR-D-dichotoma_M_contig923:36773..36851Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig923 36774..36851 +
1690799640.1803126-UTR-D-dichotoma_M_contig923:36773..368511690799640.1803126-UTR-D-dichotoma_M_contig923:36773..36851Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig923 36774..36851 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931155.8037562-CDS-D-dichotoma_M_contig923:36287..367731622931155.8037562-CDS-D-dichotoma_M_contig923:36287..36773Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig923 36288..36773 +
1690799640.1715796-CDS-D-dichotoma_M_contig923:36287..367731690799640.1715796-CDS-D-dichotoma_M_contig923:36287..36773Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig923 36288..36773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig923.19968.1

>prot_D-dichotoma_M_contig923.19968.1 ID=prot_D-dichotoma_M_contig923.19968.1|Name=mRNA_D-dichotoma_M_contig923.19968.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=162bp
MAPCKMDGCLHPELKGGQHHCPGCKMMVHNLCHQQLSGGLEGGPFFCGVD
KCNDEDDDVEPENLKRKENSRECGTLSSRRGSGGVGDISGTGEKRHRFCN
AVSCLAPGKMMDMRCGTCSAACHGVCVANTIALQGCRACLDTSAPSSAQR
GAYSLCFARVF*
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mRNA from alignment at D-dichotoma_M_contig923:36199..36851+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig923.19968.1 ID=mRNA_D-dichotoma_M_contig923.19968.1|Name=mRNA_D-dichotoma_M_contig923.19968.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=653bp|location=Sequence derived from alignment at D-dichotoma_M_contig923:36199..36851+ (Dictyota dichotoma ODC1387m male)
CAATTGGTTCGGTGAAGCCCTGATTGCTCAGTCCGAGAGGAACGAACCAA
AACGCAATAAACGGAGTAAGCTGCAACCTCTCGCTTACAATGGCACCCTG
CAAGATGGACGGTTGCCTTCACCCGGAACTAAAAGGTGGACAGCACCATT
GTCCGGGATGCAAGATGATGGTACACAATCTCTGCCATCAGCAACTATCT
GGAGGTTTAGAGGGTGGGCCCTTCTTCTGCGGCGTAGACAAGTGCAACGA
TGAAGATGATGATGTCGAGCCGGAGAACTTAAAGCGGAAGGAAAACAGTA
GAGAGTGTGGGACACTGTCGTCACGGAGAGGCTCGGGAGGTGTTGGTGAC
ATTAGTGGGACGGGAGAGAAGAGACATAGGTTTTGCAACGCCGTTTCTTG
CTTGGCTCCTGGGAAGATGATGGACATGAGATGTGGTACCTGCAGCGCTG
CTTGTCACGGAGTTTGTGTGGCGAACACAATCGCGTTGCAAGGCTGCCGA
GCCTGTCTGGACACCTCCGCGCCTTCTTCAGCTCAGCGAGGTGCGTACAG
TTTATGCTTTGCCCGGGTCTTCTAGCGTGTAGGTTATTGAACGTCGTAGG
CTTCCGACTGGCGCTTGTATTCCGACGTGATGTTCATGTCCTAGGTTTTT
GGT
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig923:36199..36851+

>mRNA_D-dichotoma_M_contig923.19968.1 ID=mRNA_D-dichotoma_M_contig923.19968.1|Name=mRNA_D-dichotoma_M_contig923.19968.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=972bp|location=Sequence derived from alignment at D-dichotoma_M_contig923:36199..36851+ (Dictyota dichotoma ODC1387m male)
ATGGCACCCTGCAAGATGGACGGTTGCCTTCACCCGGAACTAAAAGGTGG
ACAGCACCATTGTCCGGGATGCAAGATGATGGTACACAATCTCTGCCATC
AGCAACTATCTGGAGGTTTAGAGGGTGGGCCCTTCTTCTGCGGCGTAGAC
AAGTGCAACGATGAAGATGATGATGTCGAGCCGGAGAACTTAAAGCGGAA
GGAAAACAGTAGAGAGTGTGGGACACTGTCGTCACGGAGAGGCTCGGGAG
GTGTTGGTGACATTAGTGGGACGGGAGAGAAGAGACATAGGTTTTGCAAC
GCCGTTTCTTGCTTGGCTCCTGGGAAGATGATGGACATGAGATGTGGTAC
CTGCAGCGCTGCTTGTCACGGAGTTTGTGTGGCGAACACAATCGCGTTGC
AAGGCTGCCGAGCCTGTCTGGACACCTCCGCGCCTTCTTCAGCTCAGCGA
GGTGCGTACAGTTTATGCTTTGCCCGGGTCTTCTAGATGGCACCCTGCAA
GATGGACGGTTGCCTTCACCCGGAACTAAAAGGTGGACAGCACCATTGTC
CGGGATGCAAGATGATGGTACACAATCTCTGCCATCAGCAACTATCTGGA
GGTTTAGAGGGTGGGCCCTTCTTCTGCGGCGTAGACAAGTGCAACGATGA
AGATGATGATGTCGAGCCGGAGAACTTAAAGCGGAAGGAAAACAGTAGAG
AGTGTGGGACACTGTCGTCACGGAGAGGCTCGGGAGGTGTTGGTGACATT
AGTGGGACGGGAGAGAAGAGACATAGGTTTTGCAACGCCGTTTCTTGCTT
GGCTCCTGGGAAGATGATGGACATGAGATGTGGTACCTGCAGCGCTGCTT
GTCACGGAGTTTGTGTGGCGAACACAATCGCGTTGCAAGGCTGCCGAGCC
TGTCTGGACACCTCCGCGCCTTCTTCAGCTCAGCGAGGTGCGTACAGTTT
ATGCTTTGCCCGGGTCTTCTAG
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