mRNA_D-dichotoma_M_contig1010.179.1 (mRNA) Dictyota dichotoma ODC1387m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_D-dichotoma_M_contig1010.179.1 vs. uniprot
Match: A0A6H5JNX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNX0_9PHAE) HSP 1 Score: 126 bits (317), Expect = 1.880e-30 Identity = 84/196 (42.86%), Postives = 112/196 (57.14%), Query Frame = 1 Query: 220 TEAFIA---LPCRANHAR-----AQGRARTTTTLG---IIPGKNWGYEYEEVDFYPGYRPNMNVSGESKPGIAEGDDPPMEIDVN-FEHAGLVVVDFHEIPIQLRTGVLDLPTFIEEQGLALSPSEAEIMEERRARARQRRSKAREERFDDGTEEDLVDDTLEDVPMDAGGAVGHKDSAPPRDDYEDSDSYDDGYD 771
T+AF P +A AR A+ + RT G IIP GY E D +P Y PNM GESKPG P +D++ F + G VDFH+IP+ R +++ FI+ +GL + PSE E++E R+ R+KAR+ERF D +EDLVDDTL+D+P+D VG D PP D++DSD YDDGYD
Sbjct: 26 TQAFFVGGRCPLQARGARTAAAPAERQCRTRARSGLSMIIPPAELGYVTEAYDDFPDYVPNMGAWGESKPGSTPEAYPADSLDLDDFWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTMLPSETELLERDIQNERRARAKARKERFADEPDEDLVDDTLDDLPLDDEIEVGVIDVPPPPVDFDDSDGYDDGYD 221
BLAST of mRNA_D-dichotoma_M_contig1010.179.1 vs. uniprot
Match: D7FQ37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ37_ECTSI) HSP 1 Score: 122 bits (307), Expect = 9.860e-30 Identity = 73/158 (46.20%), Postives = 97/158 (61.39%), Query Frame = 1 Query: 301 IIPGKNWGYEYEEVDFYPGYRPNMNVSGESKPGIAEGDDPPMEIDVN-FEHAGLVVVDFHEIPIQLRTGVLDLPTFIEEQGLALSPSEAEIMEERRARARQRRSKAREERFDDGTEEDLVDDTLEDVPMDAGGAVGHKDSAPPRDDYEDSDSYDDGYD 771
IIP GY E D +P Y PNM GESKPG P +D++ F + G VDFH+IP+ R +++ FI+ +GL + PSE E++E R+ R+KAR+ERF D +EDLVDDTL+D+P+D VG D PP D++DSD YDDGYD
Sbjct: 2 IIPPAELGYVTEAYDDFPDYVPNMGAWGESKPGNTPEAYPADSLDLDAFWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTMLPSETELLERDIQTERRARAKARKERFADEPDEDLVDDTLDDLPLDDEIEVGVIDVPPPPVDFDDSDGYDDGYD 159 The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1010.179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dichotoma_M_contig1010.179.1 >prot_D-dichotoma_M_contig1010.179.1 ID=prot_D-dichotoma_M_contig1010.179.1|Name=mRNA_D-dichotoma_M_contig1010.179.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=225bp MLLIYFFAAVFVLGLGSLLGDMTEAFIALPCRANHARAQGRARTTTTLGIback to top mRNA from alignment at D-dichotoma_M_contig1010:65961..86703+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dichotoma_M_contig1010.179.1 ID=mRNA_D-dichotoma_M_contig1010.179.1|Name=mRNA_D-dichotoma_M_contig1010.179.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=20743bp|location=Sequence derived from alignment at D-dichotoma_M_contig1010:65961..86703+ (Dictyota dichotoma ODC1387m male)back to top Coding sequence (CDS) from alignment at D-dichotoma_M_contig1010:65961..86703+ >mRNA_D-dichotoma_M_contig1010.179.1 ID=mRNA_D-dichotoma_M_contig1010.179.1|Name=mRNA_D-dichotoma_M_contig1010.179.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1350bp|location=Sequence derived from alignment at D-dichotoma_M_contig1010:65961..86703+ (Dictyota dichotoma ODC1387m male)back to top |