mRNA_D-dichotoma_M_contig1007.144.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1007.144.1
Unique NamemRNA_D-dichotoma_M_contig1007.144.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1007.144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1007contigD-dichotoma_M_contig1007:147321..148750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size365
Cds size363
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1007.144.1prot_D-dichotoma_M_contig1007.144.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1007 147321..148748 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927484.8826149-CDS-D-dichotoma_M_contig1007:147320..1473711622927484.8826149-CDS-D-dichotoma_M_contig1007:147320..147371Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1007 147321..147371 +
1690797994.9282918-CDS-D-dichotoma_M_contig1007:147320..1473711690797994.9282918-CDS-D-dichotoma_M_contig1007:147320..147371Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1007 147321..147371 +
1622927484.8940809-CDS-D-dichotoma_M_contig1007:147813..1480261622927484.8940809-CDS-D-dichotoma_M_contig1007:147813..148026Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1007 147814..148026 +
1690797994.9418056-CDS-D-dichotoma_M_contig1007:147813..1480261690797994.9418056-CDS-D-dichotoma_M_contig1007:147813..148026Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1007 147814..148026 +
1622927484.904664-CDS-D-dichotoma_M_contig1007:148649..1487481622927484.904664-CDS-D-dichotoma_M_contig1007:148649..148748Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1007 148650..148748 +
1690797994.9534662-CDS-D-dichotoma_M_contig1007:148649..1487481690797994.9534662-CDS-D-dichotoma_M_contig1007:148649..148748Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1007 148650..148748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1007.144.1

>prot_D-dichotoma_M_contig1007.144.1 ID=prot_D-dichotoma_M_contig1007.144.1|Name=mRNA_D-dichotoma_M_contig1007.144.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=121bp
GTTLNLIVRSSKGLRFQYLIMPQKSKRTLRYEKAGQRLIEYNEEQKRLRK
IFESRIKRQEQRKARRRIAHNVKKELKRRQGAILSEREIKMMLLLYFHLT
LKIGKKEREAVQFVHQALGIS
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mRNA from alignment at D-dichotoma_M_contig1007:147321..148750+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1007.144.1 ID=mRNA_D-dichotoma_M_contig1007.144.1|Name=mRNA_D-dichotoma_M_contig1007.144.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=1430bp|location=Sequence derived from alignment at D-dichotoma_M_contig1007:147321..148750+ (Dictyota dichotoma ODC1387m male)
GGCACCACCCTCAATCTCATCGTTCGTTCAAGCAAAGGGCTCCGGTTTCA
AGTGAGTTTGTCTGTAAGAAGCTGTCTCTGGTACGCACTGTACCACACCC
CTTGTTGGTGTGGCGATAAACTCTGTATTCGAGGAATGCCCAAGGCGTTA
ACTCTACGGTAGAGACAAGGAGACAGTTGTTTGGACTCTGAACGTGTAGA
CTTCGCGCCTTAAAAGACCGCGTCATCGGTCGACCACGTATGTTGAACGG
TTAGAGACAAACATGAGTGTGACAGGAAAATGTACCCACACGACGACTAC
AGTAATACATGGTGCAGGTTGTAGAGTAACGTGATACAGTGTCCTAACTC
GGAAGAACATGGTAGGACTGGGGTGCTTGTCGGCCCTCAGGCTGCATGAG
ATACAGTAATTGTAAGAGCATACGCCGTCACCTCTTTCACTGGAGGGCAT
AAACGTACTGTACCGTACTCTGTGATTCTCCTTCGATGCACAGTATCTCA
TCATGCCTCAAAAGAGCAAGCGAACTCTGCGCTACGAGAAAGCTGGCCAA
AGGCTCATCGAGTACAACGAGGAGCAGAAGCGTCTACGCAAGATATTTGA
ATCAAGAATCAAGAGGCAGGAACAACGGAAAGCACGCCGTAGGATTGCGC
ATAACGTGAAGAAGGAACTCAAGCGACGTCAAGGAGCTATCTTGTCCGAA
CGAGAGGTACAGTAAGACGTGCGATAGAGAAGGGTGCTTCGCTGGTCAAT
CCGCGACTTGTATCGAAGTCATCCGTTGAACTTGTCGCCATGCGTCTCGT
TCAGTACAACACCTTTCGCAGCAAGATCTGGGTTTTTCAATTTGTGGGCT
TCAGAACATGAGTTGCAGAGAGTTTTACTTAACGTAGGCAACGCGAGACC
AACGATGCTCACTTCTTAACCGGCGGTTGGATACAGTAGAACTCTTTTAT
CACGAGCGAGGTTGCACACTTCGGGCGAGATCAGAAGGGTACATACAACA
TCATAATTGTTATATGGTCTCAACAGGGGTGTCGCTGGATTCCTGCGACC
AAAGGCTTTCATGGGCACTTGTACAGTATCTGCTCTCTTTGCGACGGAAA
AGATCTGGTTCAGCAGATGCAGCCTTCCTTGTGAACGATCTAAATCACGT
GTTACGAAATCATCATTCGTTGCTGTATCAAGATCACAAGCACTGTACCC
ACTACATGTCCACGATGCCTGAAAGAAAATAGTGTACATATTGTAGCCTA
CTACAGTACCAGAATATCATTAATTCCTCACAATATATGTAACTCATTTG
TGTTCCCTGCCCACCACGAATCGCCGCAGATTAAAATGATGCTGCTCCTC
TACTTCCATCTCACCTTGAAGATAGGGAAGAAGGAACGCGAAGCTGTACA
GTTTGTGCATCAGGCTCTCGGAATCAGTAA
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1007:147321..148750+

>mRNA_D-dichotoma_M_contig1007.144.1 ID=mRNA_D-dichotoma_M_contig1007.144.1|Name=mRNA_D-dichotoma_M_contig1007.144.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=726bp|location=Sequence derived from alignment at D-dichotoma_M_contig1007:147321..148750+ (Dictyota dichotoma ODC1387m male)
GGCACCACCCTCAATCTCATCGTTCGTTCAAGCAAAGGGCTCCGGTTTCA
AGGCACCACCCTCAATCTCATCGTTCGTTCAAGCAAAGGGCTCCGGTTTC
AATATCTCATCATGCCTCAAAAGAGCAAGCGAACTCTGCGCTACGAGAAA
GCTGGCCAAAGGCTCATCGAGTACAACGAGGAGCAGAAGCGTCTACGCAA
GATATTTGAATCAAGAATCAAGAGGCAGGAACAACGGAAAGCACGCCGTA
GGATTGCGCATAACGTGAAGAAGGAACTCAAGCGACGTCAAGGAGCTATC
TTGTCCGAACGAGAGTATCTCATCATGCCTCAAAAGAGCAAGCGAACTCT
GCGCTACGAGAAAGCTGGCCAAAGGCTCATCGAGTACAACGAGGAGCAGA
AGCGTCTACGCAAGATATTTGAATCAAGAATCAAGAGGCAGGAACAACGG
AAAGCACGCCGTAGGATTGCGCATAACGTGAAGAAGGAACTCAAGCGACG
TCAAGGAGCTATCTTGTCCGAACGAGAGATTAAAATGATGCTGCTCCTCT
ACTTCCATCTCACCTTGAAGATAGGGAAGAAGGAACGCGAAGCTGTACAG
TTTGTGCATCAGGCTCTCGGAATCAGTATTAAAATGATGCTGCTCCTCTA
CTTCCATCTCACCTTGAAGATAGGGAAGAAGGAACGCGAAGCTGTACAGT
TTGTGCATCAGGCTCTCGGAATCAGT
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