mRNA_D-dichotoma_M_contig1006.141.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1006.141.1
Unique NamemRNA_D-dichotoma_M_contig1006.141.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
BLAST of mRNA_D-dichotoma_M_contig1006.141.1 vs. uniprot
Match: A0A6H5J676_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J676_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 9.510e-47
Identity = 68/116 (58.62%), Postives = 92/116 (79.31%), Query Frame = 1
Query:   16 DVYSRLRAPWTTNARRYLSRGLGGMCGARAEGWFPWPSCETHHGLLTSHDDFYGWVWDAMYDPHGNVHIWLGGVIDCDETYE-EVKKLVGERAGNTFTVMSFAHRKDMYREGVWYC 360
            DVYS+LR+PW  N RRY+SRG+G MC ARAE ++PWP+CE+H+ L TS  DFY WVW+++YDPHG VHIW+GGV+DC+ETY  +++ LVGE       +M+F HRKDM+R+G++ C
Sbjct:  378 DVYSKLRSPWNVNDRRYISRGMGQMCHARAETFYPWPTCESHYNLATSFTDFYSWVWESLYDPHGPVHIWIGGVMDCEETYGVDIEHLVGEETALDLALMAFVHRKDMFRDGIFSC 493          
BLAST of mRNA_D-dichotoma_M_contig1006.141.1 vs. uniprot
Match: A0A6H5J7R8_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7R8_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 1.800e-46
Identity = 66/116 (56.90%), Postives = 87/116 (75.00%), Query Frame = 1
Query:   16 DVYSRLRAPWTTNARRYLSRGLGGMCGARAEGWFPWPSCETHHGLLTSHDDFYGWVWDAMYDPHGNVHIWLGGVIDCDETYEEVKKLVGERAGNTFTVMSFAHRKDMYREGVWYCS 363
            DVY +LRAPW  N R YL+RG+G MCG      +PWP+CETH+ L TS+ DFY +VWD++YDPHG VHIW+GGV+DC++TY  ++ LVGE A     + SF HRK++YREG++ CS
Sbjct:  397 DVYLKLRAPWNVNDRAYLTRGMGNMCGIPTSNTYPWPTCETHYDLATSYKDFYSYVWDSLYDPHGPVHIWIGGVLDCEQTYTTIRNLVGEEAAGELAMFSFVHRKNLYREGIFQCS 512          
BLAST of mRNA_D-dichotoma_M_contig1006.141.1 vs. uniprot
Match: D8LC42_ECTSI (TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC42_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 1.700e-44
Identity = 64/115 (55.65%), Postives = 87/115 (75.65%), Query Frame = 1
Query:   16 DVYSRLRAPWTTNARRYLSRGLGGMCGARAEGWFPWPSCETHHGLLTSHDDFYGWVWDAMYDPHGNVHIWLGGVIDCDETYEEVKKLVGERAGNTFTVMSFAHRKDMYREGVWYC 360
            DVY +LRAPW  N R+YL+RG+G +CGA  E  FPWP+C +H+ L T + DFY WVW ++YDPHG VHIW+GGV+DC+ETYE ++ LVG+ A +     SF HRK++YR+G++ C
Sbjct:  418 DVYGKLRAPWNVNDRQYLTRGMGELCGADMEKAFPWPTCTSHYDLATGYSDFYSWVWQSLYDPHGPVHIWVGGVLDCEETYERIEGLVGKIAASQLAEQSFIHRKNLYRDGIFKC 532          
BLAST of mRNA_D-dichotoma_M_contig1006.141.1 vs. uniprot
Match: D8LC46_ECTSI (Tyrosinase_Cu-bd domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LC46_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 8.880e-44
Identity = 61/115 (53.04%), Postives = 86/115 (74.78%), Query Frame = 1
Query:   16 DVYSRLRAPWTTNARRYLSRGLGGMCGARAEGWFPWPSCETHHGLLTSHDDFYGWVWDAMYDPHGNVHIWLGGVIDCDETYEEVKKLVGERAGNTFTVMSFAHRKDMYREGVWYC 360
            DVYS+LRAPW  N R YL+RG+G MC A+ + W+PWP+CETH+ L T + DFY WVW ++YDPHG VHIW+GGV+DC++T+  + +LVG        + SF HRK+++R+G++ C
Sbjct:  432 DVYSKLRAPWNVNDRPYLTRGMGKMCDAKVDEWYPWPTCETHYDLATGYSDFYSWVWYSLYDPHGPVHIWIGGVLDCEKTFGAIAELVGPSIAEDLALYSFIHRKNLFRDGIFSC 546          
BLAST of mRNA_D-dichotoma_M_contig1006.141.1 vs. uniprot
Match: D7G9A4_ECTSI (Ortho-aminophenol oxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A4_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 1.360e-34
Identity = 53/115 (46.09%), Postives = 78/115 (67.83%), Query Frame = 1
Query:   16 DVYSRLRAPWTTNARRYLSRGLGGMCGARAEGWFPWPSCETHHGLLTSHDDFYGWVWDAMYDPHGNVHIWLGGVIDCDETYEEVKKLVGERAGNTFTVMSFAHRKDMYREGVWYC 360
            DVY  LR+ WT N+  YL+RGLG +C       + WPSCE HH L+  +DDFY WV ++MY PHG VH W+GGV++C++T   +  LVGE+  N+ ++ +F  RK+++R+G + C
Sbjct:  356 DVYGLLRSRWTVNSSPYLTRGLGKLCDGSVLDTYAWPSCEEHHNLVMDYDDFYSWVSESMYSPHGPVHTWIGGVLNCEDTISSISSLVGEKNANSLSLNTFDQRKNLWRDGFFAC 470          
BLAST of mRNA_D-dichotoma_M_contig1006.141.1 vs. uniprot
Match: D7FW00_ECTSI (Ortho-aminophenol oxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW00_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 2.660e-34
Identity = 54/115 (46.96%), Postives = 77/115 (66.96%), Query Frame = 1
Query:   16 DVYSRLRAPWTTNARRYLSRGLGGMCGARAEGWFPWPSCETHHGLLTSHDDFYGWVWDAMYDPHGNVHIWLGGVIDCDETYEEVKKLVGERAGNTFTVMSFAHRKDMYREGVWYC 360
            DVY  LR+ WT N+  YL+RGLG +C       + WPSCE HH L+  +DDFY WV  +MY PHG VH W+GGV++C++T   V  LVGE+  N+ ++ +F  RK+++R+G + C
Sbjct:  358 DVYGLLRSRWTINSSPYLTRGLGKLCDGSVVDTYGWPSCEEHHNLVMDYDDFYSWVSKSMYSPHGPVHTWIGGVLNCEDTISSVSSLVGEKNANSLSLKTFDQRKNLWRDGFFEC 472          
BLAST of mRNA_D-dichotoma_M_contig1006.141.1 vs. uniprot
Match: A0A6H5JRR4_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRR4_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.160e-31
Identity = 52/116 (44.83%), Postives = 74/116 (63.79%), Query Frame = 1
Query:   16 DVYSRLRAPWTTNARRYLSRGLGGMCGAR-AEGWFPWPSCETHHGLLTSHDDFYGWVWDAMYDPHGNVHIWLGGVIDCDETYEEVKKLVGERAGNTFTVMSFAHRKDMYREGVWYC 360
            DVY  LR+ W  N+  YL+RG+G +C        +PWP+CE H+ + T + DFY WVW +MY PHG VH W+GGV++C+ET   V  LVGE   N+  + +F  RK+ +R+G + C
Sbjct:  392 DVYGLLRSRWNVNSSPYLTRGMGTLCNTYDVTQIYPWPTCELHYWMATEYSDFYSWVWTSMYAPHGPVHTWIGGVLNCEETMASVSGLVGEENANSLALYAFDQRKNFWRDGFFDC 507          
BLAST of mRNA_D-dichotoma_M_contig1006.141.1 vs. uniprot
Match: D7G3A2_ECTSI (Tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3A2_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 7.960e-31
Identity = 49/115 (42.61%), Postives = 74/115 (64.35%), Query Frame = 1
Query:   16 DVYSRLRAPWTTNARRYLSRGLGGMCGARAEGWFPWPSCETHHGLLTSHDDFYGWVWDAMYDPHGNVHIWLGGVIDCDETYEEVKKLVGERAGNTFTVMSFAHRKDMYREGVWYC 360
            DVY R+R+PW  N+R YL+RGLG MCG  +  ++ WP C +H+ L    + +YG+ W + Y PHG VH+W+GG +DC +  ++V  +VGE    + +   F  RKDM+R+ V+ C
Sbjct:  232 DVYGRMRSPWNVNSRPYLTRGLGEMCGLDSTEFYSWPGCSSHYDLQDKFNSYYGYTWWSQYGPHGPVHVWVGGNVDCKKNLDKVMAIVGEEYRLSMSGYLFVKRKDMFRDAVFKC 346          
BLAST of mRNA_D-dichotoma_M_contig1006.141.1 vs. uniprot
Match: A0A6H5K0B2_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0B2_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.050e-30
Identity = 49/115 (42.61%), Postives = 74/115 (64.35%), Query Frame = 1
Query:   16 DVYSRLRAPWTTNARRYLSRGLGGMCGARAEGWFPWPSCETHHGLLTSHDDFYGWVWDAMYDPHGNVHIWLGGVIDCDETYEEVKKLVGERAGNTFTVMSFAHRKDMYREGVWYC 360
            DVY R+R+PW  N+R YL+RGLG MCG  +  ++ WP C +H+ L    + +YG+ W + Y PHG VH+W+GG +DC +  ++V  +VGE    + +   F  RKDM+R+ V+ C
Sbjct:  397 DVYGRMRSPWNVNSRPYLTRGLGEMCGLDSTEFYSWPGCSSHYDLQDKFNSYYGYTWWSQYGPHGPVHVWVGGNVDCKKNLDKVMAIVGEEYRLSMSGYLFVKRKDMFRDAVFKC 511          
BLAST of mRNA_D-dichotoma_M_contig1006.141.1 vs. uniprot
Match: D8LC28_ECTSI (TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC28_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 2.270e-29
Identity = 49/99 (49.49%), Postives = 64/99 (64.65%), Query Frame = 1
Query:   16 DVYSRLRAPWTTNARRYLSRGLGGMCGARAEGWFPWPSCETHHGLLTSHDDFYGWVWDAMYDPHGNVHIWLGGVIDCDETYEEVKKLVGERAGNTFTVM 312
            DVY +LRAPW TN R YL+RGLG +C    +    WP+C+TH+ L T    FY WVWD+M  PH  +H+WLGG +DC  TYE + +LVG     T T++
Sbjct:  387 DVYGKLRAPWNTNDRAYLTRGLGQLCQLNTDQLLAWPTCQTHYELTTGFHTFYDWVWDSMKAPHAPLHLWLGGTMDCAGTYEAIGELVGNSIAETLTLL 485          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1006.141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5J676_9PHAE9.510e-4758.62TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A6H5J7R8_9PHAE1.800e-4656.90TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LC42_ECTSI1.700e-4455.65TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpu... [more]
D8LC46_ECTSI8.880e-4453.04Tyrosinase_Cu-bd domain-containing protein n=3 Tax... [more]
D7G9A4_ECTSI1.360e-3446.09Ortho-aminophenol oxidase n=1 Tax=Ectocarpus silic... [more]
D7FW00_ECTSI2.660e-3446.96Ortho-aminophenol oxidase n=1 Tax=Ectocarpus silic... [more]
A0A6H5JRR4_9PHAE1.160e-3144.83TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
D7G3A2_ECTSI7.960e-3142.61Tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5K0B2_9PHAE1.050e-3042.61TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LC28_ECTSI2.270e-2949.49TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1006contigD-dichotoma_M_contig1006:39337..39869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue2.1e-13
Seed eggNOG ortholog44056.XP_009040493.1
EggNOG free text desc.ERAD pathway
EggNOG OGsCOG0790@1,KOG1550@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size366
Cds size366
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927484.6861098-CDS-D-dichotoma_M_contig1006:39336..396401622927484.6861098-CDS-D-dichotoma_M_contig1006:39336..39640Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1006 39337..39640 -
1690797994.8200874-CDS-D-dichotoma_M_contig1006:39336..396401690797994.8200874-CDS-D-dichotoma_M_contig1006:39336..39640Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1006 39337..39640 -
1622927484.7010226-CDS-D-dichotoma_M_contig1006:39807..398691622927484.7010226-CDS-D-dichotoma_M_contig1006:39807..39869Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1006 39808..39869 -
1690797994.8305526-CDS-D-dichotoma_M_contig1006:39807..398691690797994.8305526-CDS-D-dichotoma_M_contig1006:39807..39869Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1006 39808..39869 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1006.141.1prot_D-dichotoma_M_contig1006.141.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1006 39337..39869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1006.141.1

>prot_D-dichotoma_M_contig1006.141.1 ID=prot_D-dichotoma_M_contig1006.141.1|Name=mRNA_D-dichotoma_M_contig1006.141.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=122bp
MEGRGDVYSRLRAPWTTNARRYLSRGLGGMCGARAEGWFPWPSCETHHGL
LTSHDDFYGWVWDAMYDPHGNVHIWLGGVIDCDETYEEVKKLVGERAGNT
FTVMSFAHRKDMYREGVWYCSE
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mRNA from alignment at D-dichotoma_M_contig1006:39337..39869-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1006.141.1 ID=mRNA_D-dichotoma_M_contig1006.141.1|Name=mRNA_D-dichotoma_M_contig1006.141.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=533bp|location=Sequence derived from alignment at D-dichotoma_M_contig1006:39337..39869- (Dictyota dichotoma ODC1387m male)
ATGGAAGGTCGAGGCGATGTGTACAGCAGACTCAGAGCTCCATGGACAAC CAACGCTCGGAGGTAAGCTTTCTCCCGCTCTCTTCTCTCTGCGTGTATTA AACTTGTTTCGACTTAGGCGCCTGGCCATGTTGTTGGGTGTTGTGTGAGA TGCGACTGACTCACTCCTGGCTGCCTGGATGATTCGAATGGTGCATGGCG TGGCATGGGATGGGGATGGGGATGATCAGGTACCTCTCCCGCGGCCTGGG CGGCATGTGCGGCGCTCGGGCAGAAGGATGGTTCCCATGGCCATCTTGCG AGACCCACCACGGGTTGTTAACGTCCCACGACGATTTCTACGGATGGGTT TGGGACGCCATGTATGATCCGCACGGGAATGTTCATATCTGGCTCGGTGG GGTGATCGACTGCGACGAGACGTATGAGGAGGTGAAGAAGCTCGTGGGCG AGCGTGCGGGCAACACTTTCACTGTTATGTCATTTGCTCACCGCAAGGAT ATGTACCGCGAAGGCGTTTGGTATTGCAGCGAG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1006:39337..39869-

>mRNA_D-dichotoma_M_contig1006.141.1 ID=mRNA_D-dichotoma_M_contig1006.141.1|Name=mRNA_D-dichotoma_M_contig1006.141.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=732bp|location=Sequence derived from alignment at D-dichotoma_M_contig1006:39337..39869- (Dictyota dichotoma ODC1387m male)
ATGGAAGGTCGAGGCGATGTGTACAGCAGACTCAGAGCTCCATGGACAAC
CAACGCTCGGAGATGGAAGGTCGAGGCGATGTGTACAGCAGACTCAGAGC
TCCATGGACAACCAACGCTCGGAGGTACCTCTCCCGCGGCCTGGGCGGCA
TGTGCGGCGCTCGGGCAGAAGGATGGTTCCCATGGCCATCTTGCGAGACC
CACCACGGGTTGTTAACGTCCCACGACGATTTCTACGGATGGGTTTGGGA
CGCCATGTATGATCCGCACGGGAATGTTCATATCTGGCTCGGTGGGGTGA
TCGACTGCGACGAGACGTATGAGGAGGTGAAGAAGCTCGTGGGCGAGCGT
GCGGGCAACACTTTCACTGTTATGTCATTTGCTCACCGCAAGGATATGTA
CCGCGAAGGCGTTTGGTATTGCAGCGAGGTACCTCTCCCGCGGCCTGGGC
GGCATGTGCGGCGCTCGGGCAGAAGGATGGTTCCCATGGCCATCTTGCGA
GACCCACCACGGGTTGTTAACGTCCCACGACGATTTCTACGGATGGGTTT
GGGACGCCATGTATGATCCGCACGGGAATGTTCATATCTGGCTCGGTGGG
GTGATCGACTGCGACGAGACGTATGAGGAGGTGAAGAAGCTCGTGGGCGA
GCGTGCGGGCAACACTTTCACTGTTATGTCATTTGCTCACCGCAAGGATA
TGTACCGCGAAGGCGTTTGGTATTGCAGCGAG
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