mRNA_D-dichotoma_M_contig1004.130.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1004.130.1
Unique NamemRNA_D-dichotoma_M_contig1004.130.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1004.130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1004contigD-dichotoma_M_contig1004:82371..82965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size595
Cds size459
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1004.130.1prot_D-dichotoma_M_contig1004.130.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1004 82387..82845 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927482.8024464-UTR-D-dichotoma_M_contig1004:82370..823861622927482.8024464-UTR-D-dichotoma_M_contig1004:82370..82386Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1004 82371..82386 +
1690797993.7152138-UTR-D-dichotoma_M_contig1004:82370..823861690797993.7152138-UTR-D-dichotoma_M_contig1004:82370..82386Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1004 82371..82386 +
1622927482.8288941-UTR-D-dichotoma_M_contig1004:82845..829651622927482.8288941-UTR-D-dichotoma_M_contig1004:82845..82965Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1004 82846..82965 +
1690797993.7376728-UTR-D-dichotoma_M_contig1004:82845..829651690797993.7376728-UTR-D-dichotoma_M_contig1004:82845..82965Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1004 82846..82965 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927482.8148806-CDS-D-dichotoma_M_contig1004:82386..828451622927482.8148806-CDS-D-dichotoma_M_contig1004:82386..82845Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1004 82387..82845 +
1690797993.725963-CDS-D-dichotoma_M_contig1004:82386..828451690797993.725963-CDS-D-dichotoma_M_contig1004:82386..82845Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1004 82387..82845 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1004.130.1

>prot_D-dichotoma_M_contig1004.130.1 ID=prot_D-dichotoma_M_contig1004.130.1|Name=mRNA_D-dichotoma_M_contig1004.130.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=153bp
MRRPPLILARRSPSRPYMPSSSLVVRSGVPGMRLFIVTFLFLQSHSLLHY
LILPAEFPHQGKHSIGVILQPLELNVPGDLLLEVLRPRALDRGRHDCPGV
LFLLSALREDPITPVPGPSRLPNIPLHDGDALFNRPSRLHSGCPPHHRTK
LC*
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mRNA from alignment at D-dichotoma_M_contig1004:82371..82965+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1004.130.1 ID=mRNA_D-dichotoma_M_contig1004.130.1|Name=mRNA_D-dichotoma_M_contig1004.130.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=595bp|location=Sequence derived from alignment at D-dichotoma_M_contig1004:82371..82965+ (Dictyota dichotoma ODC1387m male)
GCCCACACTCCAGCGAATGAGAAGACCTCCGCTCATCCTCGCCCGGCGGT
CTCCGTCCCGCCCCTATATGCCCTCCAGCTCCCTGGTCGTGAGGTCCGGA
GTTCCTGGTATGCGCCTGTTTATTGTCACCTTTCTCTTTCTTCAATCTCA
TTCTCTCCTCCATTATCTCATACTTCCCGCTGAGTTTCCCCATCAGGGCA
AACACTCCATCGGGGTCATCTTGCAGCCGCTTGAACTCAACGTCCCGGGC
GACCTCCTCCTGGAAGTCCTTCGGCCACGTGCCCTCGACCGCGGCCGCCA
CGATTGCCCGGGCGTACTCTTTCTCCTGTCTGCCCTCAGGGAGGACCCAA
TCACTCCAGTCCCTGGACCTAGTCGACTCCCAAACATCCCTCTTCATGAT
GGCGATGCGCTGTTCAATCGGCCATCGAGACTCCATTCGGGCTGCCCCCC
TCACCACAGGACAAAACTCTGCTAGAAACGGTCCCTCATTCGAAATTCCC
GCTTTCCTTTTCAGCGCAACTAACAGTTCATTCTCCGAGATCTCCGCAAG
AGGCCGATTTTGTAGCCTTACTCGCCTTACCCCGTCAAGGAACGA
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1004:82371..82965+

>mRNA_D-dichotoma_M_contig1004.130.1 ID=mRNA_D-dichotoma_M_contig1004.130.1|Name=mRNA_D-dichotoma_M_contig1004.130.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=918bp|location=Sequence derived from alignment at D-dichotoma_M_contig1004:82371..82965+ (Dictyota dichotoma ODC1387m male)
ATGAGAAGACCTCCGCTCATCCTCGCCCGGCGGTCTCCGTCCCGCCCCTA
TATGCCCTCCAGCTCCCTGGTCGTGAGGTCCGGAGTTCCTGGTATGCGCC
TGTTTATTGTCACCTTTCTCTTTCTTCAATCTCATTCTCTCCTCCATTAT
CTCATACTTCCCGCTGAGTTTCCCCATCAGGGCAAACACTCCATCGGGGT
CATCTTGCAGCCGCTTGAACTCAACGTCCCGGGCGACCTCCTCCTGGAAG
TCCTTCGGCCACGTGCCCTCGACCGCGGCCGCCACGATTGCCCGGGCGTA
CTCTTTCTCCTGTCTGCCCTCAGGGAGGACCCAATCACTCCAGTCCCTGG
ACCTAGTCGACTCCCAAACATCCCTCTTCATGATGGCGATGCGCTGTTCA
ATCGGCCATCGAGACTCCATTCGGGCTGCCCCCCTCACCACAGGACAAAA
CTCTGCTAGATGAGAAGACCTCCGCTCATCCTCGCCCGGCGGTCTCCGTC
CCGCCCCTATATGCCCTCCAGCTCCCTGGTCGTGAGGTCCGGAGTTCCTG
GTATGCGCCTGTTTATTGTCACCTTTCTCTTTCTTCAATCTCATTCTCTC
CTCCATTATCTCATACTTCCCGCTGAGTTTCCCCATCAGGGCAAACACTC
CATCGGGGTCATCTTGCAGCCGCTTGAACTCAACGTCCCGGGCGACCTCC
TCCTGGAAGTCCTTCGGCCACGTGCCCTCGACCGCGGCCGCCACGATTGC
CCGGGCGTACTCTTTCTCCTGTCTGCCCTCAGGGAGGACCCAATCACTCC
AGTCCCTGGACCTAGTCGACTCCCAAACATCCCTCTTCATGATGGCGATG
CGCTGTTCAATCGGCCATCGAGACTCCATTCGGGCTGCCCCCCTCACCAC
AGGACAAAACTCTGCTAG
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