prot_D-dichotoma_M_contig1004.128.1 (polypeptide) Dictyota dichotoma ODC1387m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-dichotoma_M_contig1004.128.1
Unique Nameprot_D-dichotoma_M_contig1004.128.1
Typepolypeptide
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Sequence length176
Homology
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BLAST of mRNA_D-dichotoma_M_contig1004.128.1 vs. uniprot
Match: A0A6H5KIP6_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIP6_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 5.040e-19
Identity = 48/105 (45.71%), Postives = 54/105 (51.43%), Query Frame = 0 
Query:    6 RPQPPAQHIPTPGHPTWGKNGPYDSGSNTRYFQPKTQIPPGAPVPV---CPRCGRDGHTLDDCNATLRFNGNCAECGQFGHMRRHCIKAVRSHPQANIVHGGGVN 107
            RPQPP  H P P  PTWG  G YD G N  Y Q ++  P GA + V   C RCGR GH+L DCNA  RF GNC       H RR C    R      +  G G+N
Sbjct:  305 RPQPPPAHYPPPNFPTWGSGGLYDCGRNAVYPQEESASPQGALIGVVHQCVRCGRHGHSLGDCNAPRRFEGNCTAXXXXXHRRRMCCTIDRMQQHVPVGDGEGLN 409
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BLAST of mRNA_D-dichotoma_M_contig1004.128.1 vs. uniprot
Match: A0A6H5L4A7_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A7_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 5.300e-19
Identity = 48/105 (45.71%), Postives = 54/105 (51.43%), Query Frame = 0 
Query:    6 RPQPPAQHIPTPGHPTWGKNGPYDSGSNTRYFQPKTQIPPGAPVPV---CPRCGRDGHTLDDCNATLRFNGNCAECGQFGHMRRHCIKAVRSHPQANIVHGGGVN 107
            RPQPP  H P P  PTWG  G YD G N  Y Q ++  P GA + V   C RCGR GH+L DCNA  RF GNC       H RR C    R      +  G G+N
Sbjct:  305 RPQPPPAHYPPPNFPTWGSGGLYDCGRNAVYPQEESASPQGALIGVVHQCVRCGRHGHSLGDCNAPRRFEGNCTAXXXXXHRRRMCCTIDRMQQHVPVGDGEGLN 409
[Close]
BLAST of mRNA_D-dichotoma_M_contig1004.128.1 vs. uniprot
Match: A0A6H5KYI1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYI1_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 5.470e-19
Identity = 48/105 (45.71%), Postives = 54/105 (51.43%), Query Frame = 0 
Query:    6 RPQPPAQHIPTPGHPTWGKNGPYDSGSNTRYFQPKTQIPPGAPVPV---CPRCGRDGHTLDDCNATLRFNGNCAECGQFGHMRRHCIKAVRSHPQANIVHGGGVN 107
            RPQPP  H P P  PTWG  G YD G N  Y Q ++  P GA + V   C RCGR GH+L DCNA  RF GNC       H RR C    R      +  G G+N
Sbjct:  305 RPQPPPAHYPPPNFPTWGSGGLYDCGRNAVYPQEESASPQGALIGVVHQCVRCGRHGHSLGDCNAPRRFEGNCTAXXXXXHRRRMCCTIDRMQQHVPVGDGEGLN 409
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1004.128.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KIP6_9PHAE5.040e-1945.71CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5L4A7_9PHAE5.300e-1945.71CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KYI1_9PHAE5.470e-1945.71CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 51..67
e-value: 0.16
score: 16.1
coord: 74..90
e-value: 0.1
score: 17.3
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 52..65
score: 8.829
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 75..88
score: 9.043
NoneNo IPR availableGENE3D4.10.60.10coord: 44..93
e-value: 3.3E-7
score: 32.0
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 43..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1004contigD-dichotoma_M_contig1004:26759..27286 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1004.128.1mRNA_D-dichotoma_M_contig1004.128.1Dictyota dichotoma ODC1387m malemRNAD-dichotoma_M_contig1004 26759..27288 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-dichotoma_M_contig1004.128.1 ID=prot_D-dichotoma_M_contig1004.128.1|Name=mRNA_D-dichotoma_M_contig1004.128.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=176bp
QQQQFRPQPPAQHIPTPGHPTWGKNGPYDSGSNTRYFQPKTQIPPGAPVP
VCPRCGRDGHTLDDCNATLRFNGNCAECGQFGHMRRHCIKAVRSHPQANI
VHGGGVNGCSYGGAGSSGPDGDGTWEQQQDGEIYGPGGVEYTQQPQEQQE
QLFPWGSNDGGRFFGRNDAVAEEMGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf