mRNA_D-dichotoma_M_contig1109.938.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1109.938.1
Unique NamemRNA_D-dichotoma_M_contig1109.938.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1109.938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1109contigD-dichotoma_M_contig1109:31550..32270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size278
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927622.4826088-CDS-D-dichotoma_M_contig1109:31551..316291622927622.4826088-CDS-D-dichotoma_M_contig1109:31551..31629Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1109 31552..31629 -
1690798065.881698-CDS-D-dichotoma_M_contig1109:31551..316291690798065.881698-CDS-D-dichotoma_M_contig1109:31551..31629Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1109 31552..31629 -
1622927622.4948316-CDS-D-dichotoma_M_contig1109:32072..322701622927622.4948316-CDS-D-dichotoma_M_contig1109:32072..32270Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1109 32073..32270 -
1690798065.8937893-CDS-D-dichotoma_M_contig1109:32072..322701690798065.8937893-CDS-D-dichotoma_M_contig1109:32072..32270Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1109 32073..32270 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1109.938.1prot_D-dichotoma_M_contig1109.938.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1109 31552..32270 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1109.938.1

>prot_D-dichotoma_M_contig1109.938.1 ID=prot_D-dichotoma_M_contig1109.938.1|Name=mRNA_D-dichotoma_M_contig1109.938.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=92bp
RTTVLHLAGNSQVRKQPSVQGGEGCCGNLSLSGWRASRPRRSWRQICWEG
TTLHLIVPSSRGLRFQYLIMPQKSKRTLRYEKAGQRLIEYNE
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mRNA from alignment at D-dichotoma_M_contig1109:31550..32270-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1109.938.1 ID=mRNA_D-dichotoma_M_contig1109.938.1|Name=mRNA_D-dichotoma_M_contig1109.938.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=721bp|location=Sequence derived from alignment at D-dichotoma_M_contig1109:31550..32270- (Dictyota dichotoma ODC1387m male)
AGAACTACTGTACTTCACCTTGCTGGAAACTCGCAAGTTCGAAAACAACC
ATCAGTTCAGGGTGGTGAAGGCTGTTGTGGCAACCTTTCCTTGAGCGGCT
GGCGTGCTTCTCGTCCGAGACGAAGCTGGCGCCAAATTTGTTGGGAAGGC
ACCACCCTCCATCTCATCGTTCCTTCCAGCAGAGGGCTCCGGTTTCAAGT
GAGTTTGTCTGTAAGAAGATGTCTCTGGTACGCACTGTACCACACCCCTT
GTTGGTGTGGCGATAAACTCTGTATTCGAGGAATGCCCAAGGCGTTAAGT
CTACGGTAGAGACAAGGAGACAGTTGTTTGGACTCTGAACATGTAGACTT
CGCGCATTAGAGGACCGCATCATCAATCGACCACGTATGTTGAACGGTTA
GAGACAAACATGAGTGTGACACGAAAATGTACCCACATGACGAGACTACA
GTAATACATGGTCCAGGTTGTACAGTAACGTGATACAGTATCGTAACTCG
GAAGAACATGGTAGGGCTGGGGTGCTTGTCGGCCCTCAGGCTCCATGCGA
TAACTGTAAGAGCATATGCCGTCACCTCTTTCACTGGAGGGTATAAACAT
ACTGTACCCTACTTACTCTGTGTTTCTCCTTCGATGCACAGTATCTCATC
ATGCCTCAAAAGAGCAAGCGAACTCTGCGCTACGAGAAAGCTGGCCAAAG
GCTCATCGAGTACAACGAGGA
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1109:31550..32270-

>mRNA_D-dichotoma_M_contig1109.938.1 ID=mRNA_D-dichotoma_M_contig1109.938.1|Name=mRNA_D-dichotoma_M_contig1109.938.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=552bp|location=Sequence derived from alignment at D-dichotoma_M_contig1109:31550..32270- (Dictyota dichotoma ODC1387m male)
AGAACTACTGTACTTCACCTTGCTGGAAACTCGCAAGTTCGAAAACAACC
ATCAGTTCAGGGTGGTGAAGGCTGTTGTGGCAACCTTTCCTTGAGCGGCT
GGCGTGCTTCTCGTCCGAGACGAAGCTGGCGCCAAATTTGTTGGGAAGGC
ACCACCCTCCATCTCATCGTTCCTTCCAGCAGAGGGCTCCGGTTTCAAAG
AACTACTGTACTTCACCTTGCTGGAAACTCGCAAGTTCGAAAACAACCAT
CAGTTCAGGGTGGTGAAGGCTGTTGTGGCAACCTTTCCTTGAGCGGCTGG
CGTGCTTCTCGTCCGAGACGAAGCTGGCGCCAAATTTGTTGGGAAGGCAC
CACCCTCCATCTCATCGTTCCTTCCAGCAGAGGGCTCCGGTTTCAATATC
TCATCATGCCTCAAAAGAGCAAGCGAACTCTGCGCTACGAGAAAGCTGGC
CAAAGGCTCATCGAGTACAACGAGTATCTCATCATGCCTCAAAAGAGCAA
GCGAACTCTGCGCTACGAGAAAGCTGGCCAAAGGCTCATCGAGTACAACG
AG
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