mRNA_D-dichotoma_M_contig1106.926.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1106.926.1
Unique NamemRNA_D-dichotoma_M_contig1106.926.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
[Close]
BLAST of mRNA_D-dichotoma_M_contig1106.926.1 vs. uniprot
Match: A0A6H5JQU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQU5_9PHAE)

HSP 1 Score: 445 bits (1145), Expect = 1.370e-149
Identity = 231/312 (74.04%), Postives = 258/312 (82.69%), Query Frame = 2 
Query:  224 MSRSTLAGLNISASERQYVTLGVELGTRGDGRGRLDYRTLSVQAGVLAQTNGSARVTIAHNGTDVLATVKVEVGEPAIGAPMRGRIEACVECSNSLFPKFDERSSADVNAALSRALERSMACAGGIDLDSLGIVEGKFCWVIFVDVLVLQARRAIRADGNLLDASSFAAFTALNTTRVPKVTPLVGEGGTVDDFEMSSDVTEAVPIVGIEKVPICLTMSTIDGHFIIDASMEEEACVEASMTVFVDRLGRICGSRKEGAGSVPLQHLGGMAQCAMAVGKRVFEILDAAISKAPREKGTDGEPEVGASGVGFL 1159
            MSRSTL GLN S+SER+YV LGVELG RGDGRGRLDYR+LSVQAGVLAQ+NGSARVTIAHNGTDVLA VKVEVGEP + AP  GR+E C+ CSNSLFPKFDERSS DVNA LS ALERSM   GG+DLD+LGIV+GKFCWV+FVD+LVLQA      DGNLLDASSFAA+TALNT R+PKVTPLVGEGG  DDFE+SS++ +AV I G   VP+CLTMS + GHFI+DAS+EEEACVEAS+ VFVDR GR+CGSRKEG GSVP QHLGGMAQCA A+ K VF ILD   S A   +G  G  EVGA+G GFL
Sbjct:    1 MSRSTLTGLNTSSSEREYVALGVELGMRGDGRGRLDYRSLSVQAGVLAQSNGSARVTIAHNGTDVLAAVKVEVGEPGLEAPGAGRVEVCISCSNSLFPKFDERSSGDVNAVLSGALERSMRGVGGLDLDALGIVDGKFCWVVFVDILVLQA------DGNLLDASSFAAYTALNTARIPKVTPLVGEGGIYDDFEISSNIDDAVAIKGATNVPVCLTMSRVGGHFIVDASLEEEACVEASVAVFVDREGRVCGSRKEGDGSVPAQHLGGMAQCAAAMAKGVFAILD---SSAGAARGGTGA-EVGAAGAGFL 302
[Close]
BLAST of mRNA_D-dichotoma_M_contig1106.926.1 vs. uniprot
Match: D7FYR5_ECTSI (RNase_PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYR5_ECTSI)

HSP 1 Score: 332 bits (851), Expect = 2.120e-106
Identity = 169/219 (77.17%), Postives = 187/219 (85.39%), Query Frame = 2 
Query:  224 MSRSTLAGLNISASERQYVTLGVELGTRGDGRGRLDYRTLSVQAGVLAQTNGSARVTIAHNGTDVLATVKVEVGEPAIGAPMRGRIEACVECSNSLFPKFDERSSADVNAALSRALERSMACAGGIDLDSLGIVEGKFCWVIFVDVLVLQARRAIRADGNLLDASSFAAFTALNTTRVPKVTPLVGEGGTVDDFEMSSDVTEAVPIVGIEKVPICLTMS 880
            MSRSTL GLN S+SER+YV LGVELG RGDGRGRLDYR+LSVQAGVLAQ+NGSARVTIAHNGTDVLA VKVEVGEP + AP  GR+E CV CSNSLFPKFDERSS DVNA LS ALERSM   GG+DLD+LGIV+GKFCWV+FVD+LVLQA      DGNLLDASSFAA+TALNT R+PKVTPLVGEGG  DDFE+SS++ +AV I G   VP+CLTMS
Sbjct:    1 MSRSTLTGLNTSSSEREYVALGVELGMRGDGRGRLDYRSLSVQAGVLAQSNGSARVTIAHNGTDVLAAVKVEVGEPGLEAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSMQGVGGLDLDALGIVDGKFCWVVFVDILVLQA------DGNLLDASSFAAYTALNTARIPKVTPLVGEGGIYDDFEISSEIDDAVAIKGATNVPVCLTMS 213
[Close]
BLAST of mRNA_D-dichotoma_M_contig1106.926.1 vs. uniprot
Match: A0A7S2Y3L9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3L9_9STRA)

HSP 1 Score: 261 bits (668), Expect = 1.430e-78
Identity = 140/280 (50.00%), Postives = 188/280 (67.14%), Query Frame = 2 
Query:  254 ISASERQYVTLGVELGTRGDGRGRLDYRTLSVQAGVLAQTNGSARVTIAHNGTDVLATVKVEVGEPAIGAPMRGRIEACVECSNSLFPKFDERSSADVNAALSRALERSMACAGGIDLDSLGIVEGKFCWVIFVDVLVLQARRAIRADGNLLDASSFAAFTALNTTRVPKVTPLVGEGG-TVDDFEMSSDVTEAVPIVGIEKVPICLTMSTIDGHFIIDASMEEEACVEASMTVFVDRLGRICGSRKEGAGSVPLQHLGGMAQCAMAVGKRVFEILDAAI 1090
            IS+SE+QY+ LGVE G R DGRG +D+R + V+ GV  Q NGS RV I H  T V+A VK EVGEP+   P  GR+   VE S S+FPKFD+R +AD+ A  + AL R +  +  +D  SL I+ G+FCWV++VD+LVL      RADGN+LDA+SFAA+ ALNT RVPK+T + GE G + DDFE+SSDV ++VP++  + VP+C+T+S +   F++DA+  EE C     TV V+R GR+CG RK GAG +PL  L  + Q A      +F  L+AAI
Sbjct:    6 ISSSEKQYIILGVEQGVRCDGRGCMDFRPMEVETGVFPQANGSVRVKIDHGATSVIAVVKCEVGEPSPSRPREGRVVVGVEISGSMFPKFDDRHAADLQAEATGALARVIQDSSTMDTHSLCIIPGRFCWVVYVDILVL------RADGNVLDATSFAAYAALNTARVPKLTVVPGEAGASEDDFELSSDVADSVPLLA-QDVPVCITLSLVGRQFLVDATGAEEDCASCGATVAVNRQGRVCGLRKIGAGGLPLPALPQLLQGAQQTASLLFPSLEAAI 278
[Close]
BLAST of mRNA_D-dichotoma_M_contig1106.926.1 vs. uniprot
Match: A0A7S3XUS1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUS1_HETAK)

HSP 1 Score: 221 bits (564), Expect = 6.060e-64
Identity = 110/241 (45.64%), Postives = 160/241 (66.39%), Query Frame = 2 
Query:  257 SASERQYVTLGVELGTRGDGRGRLDYRTLSVQAGVLAQTNGSARVTIAHNGTDVLATVKVEVGEPAIGAPMRGRIEACVECSNSLFPKFDERSSADVNAALSRALERSMACAGGIDLDSLGIVEGKFCWVIFVDVLVLQARRAIRADGNLLDASSFAAFTALNTTRVPKVTPLVGEGGTVDDFEMSSDVTEAVPIVGIEKVPICLTMSTIDGHFIIDASMEEEACVEASMTVFVDRLGRIC 979
            S SE++Y+ LGVE G R DGRGRLDYR ++++  +L Q NGSARVTI+H  T V+A  KVEVG+P    P  GR+    E SN+LFP+ D+R++ + NA L+ AL R +  +  +DL+ L I+ GKFCWVI +DVL+L +      +GN+LD +S AA+  LNTTR+PK T    EGG   DF++SSD  +A  + G + +P+ +T++ +  H+++DA+  EE C  A + V  +R G+IC
Sbjct:    9 SRSEKEYILLGVEQGIRTDGRGRLDYRPVAIETNILPQANGSARVTISHGATTVIAASKVEVGKPDPRRPREGRVSVGAEVSNALFPRADDRANLEANAELASALTRIIVNSDTLDLEQLCIIPGKFCWVIHLDVLILSS------NGNILDPASMAAYVTLNTTRIPKTTVFELEGGGGQDFDISSDFADAELVPGADLLPVAVTLAKVGAHWVVDAAGAEEGCAGARVAVAANRRGKIC 243
[Close]
BLAST of mRNA_D-dichotoma_M_contig1106.926.1 vs. uniprot
Match: A0A7S1GE40_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GE40_9STRA)

HSP 1 Score: 218 bits (556), Expect = 4.810e-62
Identity = 121/278 (43.53%), Postives = 169/278 (60.79%), Query Frame = 2 
Query:  266 ERQYVTLGVELGTRGDGRGRLDYRTLSVQAGVLAQTNGSARVTIAHNGTDVLATVKVEVGEPAIGAPMRGRIEACVECSNSLFPKFDERSSADVNAALSRALERSMACAGGIDLDSLGIVEGKFCWVIFVDVLVLQARRAIRADGNLLDASSFAAFTALNTTRVPKVTPLVGEGGTVDDFEMSSDVTEAVPIVGIEKVPICLTMSTIDGHFIIDASMEEEACVEASMTVFVDRLGRICGSRKEGAGSVPLQHLGGMAQCAMAVGKRVFEILDAAISKA 1099
            ER +V  GV+ G RGDGRGRLDYR +SV AG+LAQ NGSARVT+ +  TDVL  VK E+ EP+  AP  GR+E  V C +S  P+F+ R +  +NA L+ ALER++  +G IDL SL ++ G+ CWV++VDV+VL +       G++ DA S AA  AL  TR+P++  + GE     D E+  D   AV + G+E +P+ +T   + G  ++DAS EEE C  A + V V+R GR+C     G G V    L    + A  V  R+   +DAA+ K+
Sbjct:    3 ERAFVQAGVDAGVRGDGRGRLDYRFVSVDAGLLAQANGSARVTLVNAATDVLGAVKAELAEPSPDAPDAGRVECSVACWSSASPQFEGRGADAINAQLTAALERTLGSSGAIDLKSLCVIPGRMCWVLYVDVIVLDS------GGSIDDAVSLAAHAALRDTRLPRLYVVPGETEEEADVEVEEDPAAAVAL-GVEALPVTITFFQLGGKTVVDASGEEEVCATARVLVSVNRAGRVCAVETSGRGGVAPAVLHASLEAARQVSARLIARVDAALEKS 273
[Close]
BLAST of mRNA_D-dichotoma_M_contig1106.926.1 vs. uniprot
Match: A0A835YWB1_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWB1_9STRA)

HSP 1 Score: 213 bits (543), Expect = 1.940e-61
Identity = 110/189 (58.20%), Postives = 136/189 (71.96%), Query Frame = 2 
Query:  296 LGTRGDGRGRLDYRTLSVQAGVLAQTNGSARVTIAHNGTDVLATVKVEVGEPAIGAPMRGRIEACVECSNSLFPKFDERSSADVNAALSRALERSMACAGGIDLDSLGIVEGKFCWVIFVDVLVLQARRAIRADGNLLDASSFAAFTALNTTRVPKVTPLVGEG-GTVDDFEMSSDVTEAVPIVGIEKV 859
            LG   DGRG LDYR++SVQ  VL Q NGSAR+TIAH GT+VLA VK+E G P+  AP  GR+E CVECSNSLFP FD+RS  DVNAALS  L R++  +G +DL SL I+ G+FCW++++DVLVLQA      DGNLLDA+SFAA+ A NT  VP+ T + GEG G  DDFE+  D+  A  + G +KV
Sbjct:    4 LGGVQDGRGWLDYRSISVQGEVLPQANGSARITIAHGGTEVLAAVKIETGVPSADAPHEGRVEVCVECSNSLFPTFDDRSGGDVNAALSLMLARTVVESGALDLKSLCIIPGRFCWIVYLDVLVLQA------DGNLLDAASFAAYVAFNTALVPRTTVISGEGAGVEDDFEIDGDLNTATRLPGADKV 186
[Close]
BLAST of mRNA_D-dichotoma_M_contig1106.926.1 vs. uniprot
Match: A0A7S2BM69_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BM69_9STRA)

HSP 1 Score: 204 bits (519), Expect = 2.070e-56
Identity = 122/317 (38.49%), Postives = 186/317 (58.68%), Query Frame = 2 
Query:  230 RSTLAGLNISASERQYVTLGVELGTRGDGRGRLDYRTLSVQAGVLAQTNGSARVTIAHN-----GTDVLATVKVEVGEPAIGAPMRGRIEACVECSNSLFPKFDERSSA--DVNAALSRALERSMACAGGIDLDSLGIVEGKFCWVIFVDVLVLQARRAIRADGNLLDASSFAAFTALNTTRVPKVTPLVGEGGTVDDFEMSSDVTEAVPIVGIEKVPICLTMSTIDGHFIIDASMEEEACVEASMTVFVDRLGRICGSRKEGAGSVPLQHLGGMAQCAMAVGKRVFEILDAAISKAPREKGTDGEPEVGASGVGFL 1159
            R T+   + +A+E+ + TLGVE   R DGR RLDYR L+V  GVL Q +GSARVT+  +     GTD LA VK E+  PA  AP +G +   V+C+ SLF   + R  A  DVNA LS A+ R ++ +  + L+SL ++ G+F W +F+DV+V          GN+LD  S A ++AL+TTR+PK+ P+  E G  DDFE+ S+   + P+  IE+VPI +T++ I    ++DA+  EEAC    ++V V+R G  CG  + G+ ++P   +  +  CA+     +FE L+AA  ++ ++ G    P++     GF 
Sbjct:   16 RRTMIATSAAATEKAFATLGVEQNIRNDGRDRLDYRDLAVDNGVLPQAHGSARVTVGRDLVGGGGTDALAAVKAELATPAQEAPGQGFVVVSVDCAPSLFIHANNRRDARDDVNAELSAAMGRLLSSS--LALESLCVMHGRFAWRLFIDVMVFSTA------GNVLDVVSMAVWSALSTTRLPKLVPIKAEAGFPDDFELDSNQENSQPL-DIEQVPISVTLNIIGTEHVVDAAPLEEACAATRVSVGVNRRGDFCGVYQAGSSALPATRIPELMGCALGTASTLFEGLEAAAKQSTKQAGE--HPDLLPMAAGFF 321
[Close]
BLAST of mRNA_D-dichotoma_M_contig1106.926.1 vs. uniprot
Match: A0A1Y1I1Z2_KLENI (3'-5'-exoribonuclease family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I1Z2_KLENI)

HSP 1 Score: 196 bits (497), Expect = 1.120e-53
Identity = 112/287 (39.02%), Postives = 170/287 (59.23%), Query Frame = 2 
Query:  254 ISASERQYVTLGVELGTRGDGRGRLDYRTLSVQAGVLAQTNGSARVTIAHNGTDVLATVKVEVGEPAIGAPMRGRIEACVECSNSLFPKFDERSSADVNAALSRALERSMA-----CAGGIDLDSLGIVEGKFCWVIFVDVLVLQARRAIRADGNLLDASSFAAFTALNTTRVPKVTPLVGEGGTVDDFEMSSDVTEAVPIVGIEKVPICLTMSTIDGHFIIDASMEEEACVEASMTVFVDRLGRICGSRKEGAGSVPLQHLGGMAQCAMAVGKRVFEILDAAISKA 1099
            +SA+E  ++  G+    R DGRGR D+R+ S+Q  V++Q +GSARV +    TD+LA++K E+G P    P  GR+E  VE S +  P+F+ R   +++A L +ALERS A         +DL +L +VEGK CWV++ DVLVL A      DGN+LDAS+     AL+ TR+PKV  L GEG    + E++ D  E    V    VP+ +T++ +  H+I DA+ +EEA + ++++V V+  G++CG  K G+  +    +  M   A  +GKR+   +DA IS A
Sbjct:    4 LSAAELSFLEGGIAQDLRNDGRGREDFRSFSIQLDVISQASGSARVRL--GATDILASIKAELGSPPAEFPHLGRLELAVEISPTAGPEFEGRGGEELSAELGKALERSFAGGANGTGAAVDLAALSVVEGKTCWVLYADVLVLNA------DGNILDASAIGIKAALSNTRIPKVEVLAGEGDEEGELELNDDPDECAR-VSTAAVPLIVTLTKVGRHYIADATGDEEAQMSSALSVAVNEKGQLCGVTKRGSAGIDPSVISDMLSVARRIGKRLLAKVDAEISLA 281
[Close]
BLAST of mRNA_D-dichotoma_M_contig1106.926.1 vs. uniprot
Match: A0A5D6XYY3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYY3_9STRA)

HSP 1 Score: 194 bits (492), Expect = 6.920e-53
Identity = 125/304 (41.12%), Postives = 170/304 (55.92%), Query Frame = 2 
Query:  248 LNISASERQYVTLGVELGTRGDGRGRLDYRTLSVQAGVLAQTNGSARVTIAHNGTDVLATVKVEVGEPAIGAPMRGRIEACVECSNSLFPKFDERSSADVNAALSRALERSMACAGGIDLDSLGIVEGKFCWVIFVDVLVLQARRAIRADGNLLDASSFAAFTALNTTRVPKVTPLVGEGGTVDDFEMSSDVTEAVPIVGIEKVPICLTMSTIDGHFIIDASMEEEACVEASMTVFVDRLGRICGSRKEGAGSVPLQHLGGMAQCAMAVGKRVFEILDAAISKAPREKGTDGEPEVGASGVGFL 1159
            L ISASE+QYV  G+    R DGR RL YR+L+V+  +LAQ+NGSARVT+ H+GTDVLA+VK+EV  P   AP  G +   V CS S+  K   R++ ++N  LS+ L R +  A   DL S  IV G+  W IFVDV+V ++       GNL D  S A + ALN T  P V  LVG  G     E+ +D   A   +     P+C+T+  +  HFI D  +EEE C+ A M+V VD  G +CG +K GAG++ ++ +  M   A A  K +F+ L AA+    +     G        VGFL
Sbjct:    4 LQISASEQQYVAEGIAADVRADGRARLAYRSLAVETSLLAQSNGSARVTLEHSGTDVLASVKLEVTSPRPEAPDAGVVTVNVSCSPSVSAKLAGRAAEELNVELSQQLTRLLCSAA--DLSSYCIVPGESVWGIFVDVVVFES------TGNLPDLISMAVYAALNDTVFPAVR-LVGVEGEDRTIEVETD-PAAGKRMAAAHWPLCITLCKVGAHFITDPMLEEELCMTAQMSVAVDPSGNVCGVQKSGAGAIDMREMQSMVDEACARSKDLFKQLQAALQLQRKRDARAGHK---LERVGFL 294
[Close]
BLAST of mRNA_D-dichotoma_M_contig1106.926.1 vs. uniprot
Match: K3X0U9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0U9_GLOUD)

HSP 1 Score: 189 bits (481), Expect = 2.550e-51
Identity = 117/304 (38.49%), Postives = 168/304 (55.26%), Query Frame = 2 
Query:  248 LNISASERQYVTLGVELGTRGDGRGRLDYRTLSVQAGVLAQTNGSARVTIAHNGTDVLATVKVEVGEPAIGAPMRGRIEACVECSNSLFPKFDERSSADVNAALSRALERSMACAGGIDLDSLGIVEGKFCWVIFVDVLVLQARRAIRADGNLLDASSFAAFTALNTTRVPKVTPLVGEGGTVDDFEMSSDVTEAVPIVGIEKVPICLTMSTIDGHFIIDASMEEEACVEASMTVFVDRLGRICGSRKEGAGSVPLQHLGGMAQCAMAVGKRVFEILDAAISKAPREKGTDGEPEVGASGVGFL 1159
            L ISASE++Y+  GVE   R DGR RL YR L ++  +L Q+NGSARV++ ++GTD+LA+VK+EV  P   AP  G ++  V CS S+  K   R++ ++N  LS+ + R +      DLD   IV G+  W I VDV+V ++       GNL D  S A + ALN T  P V  LVG  G     E+ +D   A  ++     PIC+T+  I  +FI D   EEE C  A M+V VD  G++CG +K G+G++ ++ +  M   A A  K +F++L AA+    +     G        VGFL
Sbjct:    2 LKISASEQKYIVEGVEANVRADGRSRLAYRNLVIETSLLTQSNGSARVSLENSGTDILASVKLEVTTPKPEAPNAGIVQVAVSCSPSVSAKLSGRAAEEMNVELSQLMTRLLCSCPSADLDQYCIVPGESVWGINVDVVVFES------TGNLPDLISMAIYAALNDTIFPSVR-LVGVEGEDKTIEVETD-PAAGKLMAAANWPICVTLCKIAAYFITDPMQEEELCTTAQMSVAVDPNGKVCGVQKSGSGAIDMREMQAMVDEASARSKDLFKLLQAALQLQRKRDARAGHK---IERVGFL 294
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1106.926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQU5_9PHAE1.370e-14974.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYR5_ECTSI2.120e-10677.17RNase_PH domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S2Y3L9_9STRA1.430e-7850.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3XUS1_HETAK6.060e-6445.64Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1GE40_9STRA4.810e-6243.53Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A835YWB1_9STRA1.940e-6158.20Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
A0A7S2BM69_9STRA2.070e-5638.49Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A1Y1I1Z2_KLENI1.120e-5339.023'-5'-exoribonuclease family protein n=1 Tax=Klebs... [more]
A0A5D6XYY3_9STRA6.920e-5341.12Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3X0U9_GLOUD2.550e-5138.49Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1106contigD-dichotoma_M_contig1106:38339..44772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score334.3
Seed ortholog evalue5.9e-89
Seed eggNOG ortholog2880.D7FYR5
Preferred nameEXOSC7
KEGG koko:K12589
KEGG Pathwayko03018,map03018
KEGG ModuleM00390,M00391
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005652,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009892,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016075,GO:0016078,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017091,GO:0019219,GO:0019222,GO:0019439,GO:0022613,GO:0031123,GO:0031125,GO:0031323,GO:0031329,GO:0031974,GO:0031981,GO:0032991,GO:0034399,GO:0034427,GO:0034470,GO:0034472,GO:0034473,GO:0034475,GO:0034476,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071035,GO:0071038,GO:0071042,GO:0071046,GO:0071047,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903311,GO:1905354
EggNOG free text desc.U1 snRNA 3'-end processing
EggNOG OGsCOG2123@1,KOG1612@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRrp42 is a component of the exosome 3'->5' exoribonuclease complex, a complex that degrades mRNAs.
Ec32 orthologEc-26_004200.1
Exons8
Model size2084
Cds size939
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1106.926.1prot_D-dichotoma_M_contig1106.926.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1106 39327..44549 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927619.4457214-UTR-D-dichotoma_M_contig1106:38338..391371622927619.4457214-UTR-D-dichotoma_M_contig1106:38338..39137Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1106 38339..39137 -
1690798064.8504515-UTR-D-dichotoma_M_contig1106:38338..391371690798064.8504515-UTR-D-dichotoma_M_contig1106:38338..39137Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1106 38339..39137 -
1622927619.4628046-UTR-D-dichotoma_M_contig1106:39203..393261622927619.4628046-UTR-D-dichotoma_M_contig1106:39203..39326Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1106 39204..39326 -
1690798064.8653276-UTR-D-dichotoma_M_contig1106:39203..393261690798064.8653276-UTR-D-dichotoma_M_contig1106:39203..39326Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1106 39204..39326 -
1622927619.6296072-UTR-D-dichotoma_M_contig1106:44549..447721622927619.6296072-UTR-D-dichotoma_M_contig1106:44549..44772Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1106 44550..44772 -
1690798064.9555686-UTR-D-dichotoma_M_contig1106:44549..447721690798064.9555686-UTR-D-dichotoma_M_contig1106:44549..44772Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1106 44550..44772 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927619.478038-CDS-D-dichotoma_M_contig1106:39326..396051622927619.478038-CDS-D-dichotoma_M_contig1106:39326..39605Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1106 39327..39605 -
1690798064.8833258-CDS-D-dichotoma_M_contig1106:39326..396051690798064.8833258-CDS-D-dichotoma_M_contig1106:39326..39605Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1106 39327..39605 -
1622927619.4923341-CDS-D-dichotoma_M_contig1106:40186..403061622927619.4923341-CDS-D-dichotoma_M_contig1106:40186..40306Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1106 40187..40306 -
1690798064.8956847-CDS-D-dichotoma_M_contig1106:40186..403061690798064.8956847-CDS-D-dichotoma_M_contig1106:40186..40306Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1106 40187..40306 -
1622927619.509233-CDS-D-dichotoma_M_contig1106:41085..411571622927619.509233-CDS-D-dichotoma_M_contig1106:41085..41157Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1106 41086..41157 -
1690798064.9074826-CDS-D-dichotoma_M_contig1106:41085..411571690798064.9074826-CDS-D-dichotoma_M_contig1106:41085..41157Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1106 41086..41157 -
1622927619.5366151-CDS-D-dichotoma_M_contig1106:42160..422551622927619.5366151-CDS-D-dichotoma_M_contig1106:42160..42255Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1106 42161..42255 -
1690798064.9187238-CDS-D-dichotoma_M_contig1106:42160..422551690798064.9187238-CDS-D-dichotoma_M_contig1106:42160..42255Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1106 42161..42255 -
1622927619.5786273-CDS-D-dichotoma_M_contig1106:42927..430901622927619.5786273-CDS-D-dichotoma_M_contig1106:42927..43090Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1106 42928..43090 -
1690798064.927052-CDS-D-dichotoma_M_contig1106:42927..430901690798064.927052-CDS-D-dichotoma_M_contig1106:42927..43090Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1106 42928..43090 -
1622927619.595185-CDS-D-dichotoma_M_contig1106:43646..437091622927619.595185-CDS-D-dichotoma_M_contig1106:43646..43709Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1106 43647..43709 -
1690798064.935208-CDS-D-dichotoma_M_contig1106:43646..437091690798064.935208-CDS-D-dichotoma_M_contig1106:43646..43709Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1106 43647..43709 -
1622927619.6122987-CDS-D-dichotoma_M_contig1106:44402..445491622927619.6122987-CDS-D-dichotoma_M_contig1106:44402..44549Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1106 44403..44549 -
1690798064.945254-CDS-D-dichotoma_M_contig1106:44402..445491690798064.945254-CDS-D-dichotoma_M_contig1106:44402..44549Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1106 44403..44549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1106.926.1

>prot_D-dichotoma_M_contig1106.926.1 ID=prot_D-dichotoma_M_contig1106.926.1|Name=mRNA_D-dichotoma_M_contig1106.926.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=313bp
MSRSTLAGLNISASERQYVTLGVELGTRGDGRGRLDYRTLSVQAGVLAQT
NGSARVTIAHNGTDVLATVKVEVGEPAIGAPMRGRIEACVECSNSLFPKF
DERSSADVNAALSRALERSMACAGGIDLDSLGIVEGKFCWVIFVDVLVLQ
ARRAIRADGNLLDASSFAAFTALNTTRVPKVTPLVGEGGTVDDFEMSSDV
TEAVPIVGIEKVPICLTMSTIDGHFIIDASMEEEACVEASMTVFVDRLGR
ICGSRKEGAGSVPLQHLGGMAQCAMAVGKRVFEILDAAISKAPREKGTDG
EPEVGASGVGFL*
back to top

mRNA from alignment at D-dichotoma_M_contig1106:38339..44772-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1106.926.1 ID=mRNA_D-dichotoma_M_contig1106.926.1|Name=mRNA_D-dichotoma_M_contig1106.926.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=6434bp|location=Sequence derived from alignment at D-dichotoma_M_contig1106:38339..44772- (Dictyota dichotoma ODC1387m male)
ACCAGCTGATCGCATTCGCTCCTGTGTGGTGCCTTCGCTCGTCATCCATT
AATCCAGTGGCTCCTCGAAGTGAGTACAGCTAGACTGTGAGAAGAAAAAA
CGGAAGCCCGACAACTCATTTGTCATCGATTGCTCTAGGACTTAGTCGGT
GACAGACTTCAGCTTCGAGTTTGTCGGCCTGCAGGCGCCCCTCACTGCCT
ACCGGGCGAGCATCGCGGCATCCATGTCCAGGTCAACGCTTGCAGGACTA
AACATCTCGGCGTCAGAGCGACAGTATGTGACACTTGGAGTTGAGCTCGG
AACAAGGGGAGATGGTCGAGGGAGACTGGACTACCGCACGTTGTCGGTGC
AGGCTGGCGTGCTTGCACAGGTGAACTCTCCTTAGATCTTACTAAAAGCA
CTTGAGATCATCACATACAGTAAGGTATCATGCGAAGAACAGCATCAGAT
GCACAATCGTTGGAGCTTGCACCTCCTTGAAACCATGAACTACCCTGTAT
CTATAATAGGTCGTTGTCCCACATGGTTTCAACCACTTCCTCGGTGAATG
CAGTCGTTGATTTCCTCGTTTTCTAAGCACCGTCTTCCGCTCTGGATGTC
ATGAAAGCTGTAATGCGACATCCACGTCAAGGACGCAGCATACACCCGAT
TTTTGAAGACAGACTCGTCGCCAAGACGAAGCTGTTCCTTGCGCACGAGG
TGCAGGATGCTCCCATCATTCAGGGGGTTGGTATCCGCGAGCGTCGATGG
ATGCTTCACGATCTTTTTGCGGAAAAAATAAGTATGTATGTAGGATTAGC
TGAAACGGTCACCCTGCGAGGAGCAAACGTTGACCGATGCGTGAGATTGT
TGCCTGCAGCATACTAGCTTTCGAGCTCGCCGAAGTCATCGAGTTTCGCG
AGTACATCGTAAGTCGTCTCTACGCATCCTCCGAAAGGTTCAAACTACTG
TACAGTAGGATGAATCATGCGCTGAAAGCCCTGGAAGCAACAAAATCTCG
ATCGCCCATGCTCCATCGGGCGTCCGGCCCTTGCTCTTTCCCCCCCGGCG
TTGGTCGCTGCAGACGAATGGATCAGCGAGGGTGACGATCGCACACAATG
GTACTGACGTCCTTGCTACGGTGAAGGTGAGACGACGCTACGGTAGCGGG
AAGGAGTCAGGAAGAGGGGGACGGAGCCCAGCAGCCCGTGCCCTGTGAAC
AACGCAGAGCAAGAACAACAAATGCTTAGGCTGTTTGTTGTGCCCACATC
GATACAGAGCTTTCCTTCCGTCACGTCACGTCTTGCAGCCGTGTAGGATA
CAGCTACTGTGCTGATGCGGAGGAAGACTTTGGACTGCAACGCTACATGG
ATTTTCTACCTGATCCTAGAGCAAGGAGGAGCACGGGATCGACGTTTCCG
GACTTTTTCCTGTCTCTCATCCCGTCTCCGCTGCTCGTTCGATGCGAACG
GCTCTCATGGTGTTGGGAAGCACCCCACATGAACGACAACCCTTCCCCAT
CATGTCCTGGGCGTTGGTTGTCTCGTTCATCATCGTCGCGAAGAGTATTC
GATGCCGATACATCGATGGACGGGAAAACTTCCGAAGCGGGTCGAGCTTC
TCGAGCGAAACGTCGTTGTCATCGTCGTCGTCGTCGTCGTCGTCGTCGTC
ATTGCCGTTGTCGTTGTCGTTCGTTCGGAAAGGTCGAGGTTGGCGAGCCC
GCAATCGGTGCGCCCATGAGAGGACGCATAGAGGCGTGCGTCGAGTGCTC
GAACAGCCTGTTCCCGAAGTTCGACGAACGCTCATCGGCAGACGTGAACG
CTGCTCTCAGTCGGGCGCTAGAACGAAGCATGGCCTGCGCTGGAGGTCAG
AGGAACCCGGCGAGCGAAGACAGGATCCGATCCTCGAGGAATCGCTGTGG
GCATGTTCGCCCCCCGCTCCCCCGCCCCCGCCCCCGCCCCCCTGCGTTCC
GCTTGAGATGGTGGGGTTGGCGTTCCGGGAGGCCCCATGTCGGCAATGAT
TGATTTTCGTGACTAGAGTCCATCAAATCGTGATGAACTCAAGTTTTAAC
CCATTCACGTGGGAGTGATCTGTGTACCCAATCAAATAGTCATTTTGTTT
CCCATATGACAGGATGTGTATGCCCACCGTATGAATTTGCTGTACTCCAA
GCTGGTGGGAGTGCCAAGTAAGGTCTTGGCTTTAAATTTCCGGGTCTTTG
GTTCCTCGATGTACCCTTCAAGCCATCTCCACGATGTTTCTGGCGGACCT
TTTTCTTCTGCGACTGTGAGTTTTGTCAACAACCTCCCCGTGCCATTCTC
AATTGAAAGTTGAGCGATGCCATAACAAACACCGCTTGGTTCATGTGGAA
TTCGTCGGTCAGTCGGCCCCTGGTGTCGGCAAGTAGCGCGATACGCTCGA
AGCTTACGTTGCGACCTCTGCATCTCGCAGGCTGCCTGAGGCGATCATGT
GCGTACTCTTGGCCCCCTCCTCCATGCTTCCATGGCTTCATGCCTCTATG
CTCTCTGCGTTTCTCAGGAATCGACTTGGACTCGCTCGGCATCGTGGAGG
GCAAGTTCTGTTGGGTCATCTTCGTCGACGTGCTTGTGCTGCAGGCGAGG
CGAGCAATCCGAGTTCGTTCGCCAAACAGATACGCACACACACACATACA
GACAAACGCATACGCACACACAAGTAGCTCATCCGCCGCCCGAACAGTTC
GGGTACGCGTAGCTTTGGGAAGCCTTCGGGGAAGACGATACATTGCGTGC
GTTGGATTAGCGAGTTTCGTTTAGTACGATTGCCACTGTTTTTGAGGTTT
TGGTGGGAACTCTGAAAATTTATTTTGGATAAAGTATAGTACCACTGCCG
CAATTATAGTTATCTCCCACCCAACGGGGTTTTCGATAAACGAAACTCGC
TCATTCGCTGAGGCATGCAGAAAGATAGCGCAGGGATGTTAAGGTAGAGT
GGTGACGAATGTTTTGAGGAATGTATGCTATTGAGCGAGGTCACGTATAC
GTGATAAATGCCTACGCGCACCCAGATCCGCACTCGTGCCATCATGGTCG
AGCAGTCGCGTCTCCTGCAGTAATCACTAACGAGTCGTCCATGAAAGGTC
AAGGAAAGGAGGAGGTGAGACGGGATGCTGATCGAAACGCGCCTACTCAC
GTTGAAGTAGAGAGTCGACCGGAGGATGGACAGCGTCAAGCGTAATATTA
CCTATCGATATATGGGCACTATTGAAGGACGTGTCGGATTGACCCCGGTT
ATGTTACGGTTCTGGGTGACTGCGCTACCGATGTCACTAGCCTTCTCCCC
ACCTGTAGTTCTCATTGTGGAAAAGAGAGCAAAGCCAAACGTACTGCCCG
AAGGAGTTGATACCCTCGCGCGATCGACGACGCGGCAGGTGCTCGAAAAG
ATGATCCAATGAAACGCAGCGATTCCGGATGGATGATGACGGGTGAAACC
CGGGGAGCGGTAGTAACAAAGCAGATGCTGACTGTCGCAACGGTGCGAAC
TCCTCGTGTTGTTTCTAGTCGACTTCCGTGTCGAGCGCACCGATGAATCC
GTGTCCTGCTCGAGCAAGCAGCGCTCCTGATTCGCACCCCCGTGCGTCGT
GGTGATTCGCGCCAGGCTGACGGGAACCTGTTGGACGCCTCGTCCTTCGC
GGCTTTCACGGCTCTCAATACTACGAGGGTTCCCAAGGTGTGTGTTAACA
TAATCGCCTTTTGGAGGGAGATAGAGGGGGGGCGGTCGATTCAACTCCCA
TATTGTGACGTCGTGAACATACGGGGCTCGGGTGGGACACCCAACATAGT
AACCGATCGTGGCAGGTCACTGCAAGGCAAGGAGCGACGCAGCACTACCC
CGCCGGACTCGTGCCCGCCGAAACATTCAGGGACTTCGGAAACGCCGAGC
CTTTGGTACATATCTCACGTGTTCGAACCGGAGCAGTAGTCTCTCTCTCT
CTCTCTCAGTCAGTCATGATTCTCGTGGGCCGGGGTCGTCATTCGCAGGT
CTGGTCCGCGAACGCCTCTCGGGCTTGCTTTACCTGCTGGAATCCTGGAA
AATACAGTCATTGTAGGATATCAAGTTACTGACGGAAACGGTACCCATGA
GTATAATCCATCGGAAGCCTGGATCATAAAAATCCCCCAGAGAAGGCGGG
CAAGAATGCGCACTGTAGAGGGTACCCTCGAGGTGATTCTGCGCGTGCTC
CGCGTTCTCGCCGTGAGCTGCAGAGGTTGCGGCAGCTGAAAACTGGGGTT
TTCAACTCGCTTTACGGGTAATGCCAGCAAATAGACCAAATGTTCTTGTT
TTGATTTTCGTTACAACTGGTGTGTTACTTTTTGCGGCAGACAGCAACGG
TTGTGACTTCCTTCGGGCTCACCGACGGAAGGGCTGTAAGGGTCGCCTCG
CTCTCACCCAGGAATGGATTTGCTTGCTATGTGCCCGTCCCGTTCCATCC
TTTCCACGTCTCGCAGGTGACACCCTTGGTTGGAGAGGGAGGAACCGTGG
ACGACTTTGAGATGTCGTCGGATGTGACCGAAGCCGTCCCGATTGTAGGG
ATCGAGAAGGTGCCCATCTGCCTCACGATGTCGACGGTGAGACGAGACGA
TCAGGCGTGATCGAGAGGGAGAGCGGGGGTCCTCAAGAGTCCTATCGTTT
CTTCCGTCCTTGATTCAAGTGTTGGACAGCGGGTTGCCGTCGCCTAGATC
GTGCCGTGGGGTTGATCCACAGATTTGATGCGTGATCGTCCCTGAACCAA
GTTCAGTTGACGTTCGGCATGGTGTTCCTGCAAAGTAGGGTGGCATATCT
TTTGAAATAGTATGGGAGATACATGGTATACTTTCCTTCTTTCGCGAGGG
GCGGGATGATCTTGGTGGGATTCGCCTCCCGTAGTATTCCTGTCTTTGCA
TCGTGGTGAGCCGCCGTCCGAACTTCTGCGTTGTTCGATTCAAAGTGTAT
CTCACGGGCAATTTCCCGAAGAATTTTCGCCAGCACATCTGACACATCTA
CATCCTTCTTCTATTCCGTGTTTTTTCTTCTTTTTTTTTCAGTGGATTGT
CTCTGAGAGCGTGCGAGTTCCGCCGGGTAAGTGCTGTGAGACTCTACATG
CCGTTATGCTCCGGCACTTGTAGAAGTTCAGTGGTTCGCCCACGTCGCTG
TCCGTTTCCTCAAGCAGATCGATGGCCACTTCATTATTGATGCCAGCATG
GAAGAGGAGGCGTGCGTGGAGGCGTCGATGACGGTTTTCGTAGACCGCTT
AGGGCGTATTTGCGGATCGCGAAAGGAGGGGGCAGGGTCTGTACCACTGC
AGCATCTAGGGGGAATGGCCCAGTGTGCCATGGCCGTTGGCAAGCGGGTG
TTCGAGATACTGGATGCTGCGATCAGCAAGGCGCCGAGGGAGAAAGGTAC
AGACGGCGAGCCGGAGGTTGGAGCGTCGGGAGTAGGATTCTTGTAGCCAA
CTAATCTCTCCATTTCGCTCGTTTGATATGTAGCATCGACCGCGTGGCCG
GGATGGACTCTATCTCCTTCGTTGTTGTGCCATCGCTCCACTCCTTAGGA
GTTTCCGTAGACCACCAAATATCTTCGTAGATTCTGATAGGCAGGGAGGA
CACGCCACGGTCGTAGACTCTGATTATGCTGTTCTGGACGCTGGGGGGGG
GGGGGAGTCACACGATGGGATCTAGTGAGCATCGATATAATTATTTTTGG
GTCACGTGAAAGCGCCGTATCGATTTGTTGCAAAAGGAAATAGGACCATT
GGAGAGCCACATATCCACTGGGCCAGGGTTTCGAATGTCCAAGCCGGTCA
TATGGTGTGGCTGGGCGAGAACAGACCACGGTCGCCATACCTTCGGTGCT
TTTGTGAAAGTCCAAATGCATGGAAGGCGTTTTGGATGGCTCCTCTTGGA
AAAGCGTGACTCCTTTGGTTCAGCCGTGAGGGGTTGTCTCTGCCTGAAAG
GAGGGCTGAAAAGAATGGAAATGAAATTGCCACAGTGCCCTGCTCGTTTG
AGCACCTTCAGGACCGTTGTTGGGTCCGAGTCCTGCTTCTGGATTCCATT
TTCGCCTTCGCGCTGCAGTGTCCCTGCTGGCGTCGCTGGATGCATTCATC
TGCTCGGTCGAGTCGCGGCTCGACCTTCAAGGTTAGGAATTGAAAGTTGC
TCAAGTGGCAGGGACGTGATGGCTCGTTCATGGAGGACCTCCGTTGCTTG
AGGTCCAAGCGCAACCGAAATGTATATACAGTATCATGGATGGGGGCGCA
CTCACTGGTGTGTGAAGCACGTGGAATAGATAGACAGCGGGGACTACGAT
TGCGATATTCGCCAGGTTTATTACCCTTCCCGTGCAGTGCCGAGCAAACA
TGCGTGGGACGAAACCCGGGTTCGGCCTCCTCGGTCGAGCTGCAGCAGTC
TCCGGCTTCGAGGGGCCCTATGATGGAGTCTGAC
back to top

Coding sequence (CDS) from alignment at D-dichotoma_M_contig1106:38339..44772-

>mRNA_D-dichotoma_M_contig1106.926.1 ID=mRNA_D-dichotoma_M_contig1106.926.1|Name=mRNA_D-dichotoma_M_contig1106.926.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1878bp|location=Sequence derived from alignment at D-dichotoma_M_contig1106:38339..44772- (Dictyota dichotoma ODC1387m male)
ATGTCCAGGTCAACGCTTGCAGGACTAAACATCTCGGCGTCAGAGCGACA
GTATGTGACACTTGGAGTTGAGCTCGGAACAAGGGGAGATGGTCGAGGGA
GACTGGACTACCGCACGTTGTCGGTGCAGGCTGGCGTGCTTGCACAGATG
TCCAGGTCAACGCTTGCAGGACTAAACATCTCGGCGTCAGAGCGACAGTA
TGTGACACTTGGAGTTGAGCTCGGAACAAGGGGAGATGGTCGAGGGAGAC
TGGACTACCGCACGTTGTCGGTGCAGGCTGGCGTGCTTGCACAGACGAAT
GGATCAGCGAGGGTGACGATCGCACACAATGGTACTGACGTCCTTGCTAC
GGTGAAGACGAATGGATCAGCGAGGGTGACGATCGCACACAATGGTACTG
ACGTCCTTGCTACGGTGAAGGTCGAGGTTGGCGAGCCCGCAATCGGTGCG
CCCATGAGAGGACGCATAGAGGCGTGCGTCGAGTGCTCGAACAGCCTGTT
CCCGAAGTTCGACGAACGCTCATCGGCAGACGTGAACGCTGCTCTCAGTC
GGGCGCTAGAACGAAGCATGGCCTGCGCTGGAGGTCGAGGTTGGCGAGCC
CGCAATCGGTGCGCCCATGAGAGGACGCATAGAGGCGTGCGTCGAGTGCT
CGAACAGCCTGTTCCCGAAGTTCGACGAACGCTCATCGGCAGACGTGAAC
GCTGCTCTCAGTCGGGCGCTAGAACGAAGCATGGCCTGCGCTGGAGGAAT
CGACTTGGACTCGCTCGGCATCGTGGAGGGCAAGTTCTGTTGGGTCATCT
TCGTCGACGTGCTTGTGCTGCAGGCGAGGCGAGCAATCCGAGAATCGACT
TGGACTCGCTCGGCATCGTGGAGGGCAAGTTCTGTTGGGTCATCTTCGTC
GACGTGCTTGTGCTGCAGGCGAGGCGAGCAATCCGAGCTGACGGGAACCT
GTTGGACGCCTCGTCCTTCGCGGCTTTCACGGCTCTCAATACTACGAGGG
TTCCCAAGGCTGACGGGAACCTGTTGGACGCCTCGTCCTTCGCGGCTTTC
ACGGCTCTCAATACTACGAGGGTTCCCAAGGTGACACCCTTGGTTGGAGA
GGGAGGAACCGTGGACGACTTTGAGATGTCGTCGGATGTGACCGAAGCCG
TCCCGATTGTAGGGATCGAGAAGGTGCCCATCTGCCTCACGATGTCGACG
GTGACACCCTTGGTTGGAGAGGGAGGAACCGTGGACGACTTTGAGATGTC
GTCGGATGTGACCGAAGCCGTCCCGATTGTAGGGATCGAGAAGGTGCCCA
TCTGCCTCACGATGTCGACGATCGATGGCCACTTCATTATTGATGCCAGC
ATGGAAGAGGAGGCGTGCGTGGAGGCGTCGATGACGGTTTTCGTAGACCG
CTTAGGGCGTATTTGCGGATCGCGAAAGGAGGGGGCAGGGTCTGTACCAC
TGCAGCATCTAGGGGGAATGGCCCAGTGTGCCATGGCCGTTGGCAAGCGG
GTGTTCGAGATACTGGATGCTGCGATCAGCAAGGCGCCGAGGGAGAAAGG
TACAGACGGCGAGCCGGAGGTTGGAGCGTCGGGAGTAGGATTCTTGTAGA
TCGATGGCCACTTCATTATTGATGCCAGCATGGAAGAGGAGGCGTGCGTG
GAGGCGTCGATGACGGTTTTCGTAGACCGCTTAGGGCGTATTTGCGGATC
GCGAAAGGAGGGGGCAGGGTCTGTACCACTGCAGCATCTAGGGGGAATGG
CCCAGTGTGCCATGGCCGTTGGCAAGCGGGTGTTCGAGATACTGGATGCT
GCGATCAGCAAGGCGCCGAGGGAGAAAGGTACAGACGGCGAGCCGGAGGT
TGGAGCGTCGGGAGTAGGATTCTTGTAG
back to top