mRNA_D-dichotoma_M_contig1106.930.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1106.930.1
Unique NamemRNA_D-dichotoma_M_contig1106.930.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1106.930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1106contigD-dichotoma_M_contig1106:102134..102746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size613
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1106.930.1prot_D-dichotoma_M_contig1106.930.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1106 102290..102673 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927619.354466-UTR-D-dichotoma_M_contig1106:102133..1022891622927619.354466-UTR-D-dichotoma_M_contig1106:102133..102289Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1106 102134..102289 +
1690798064.8087604-UTR-D-dichotoma_M_contig1106:102133..1022891690798064.8087604-UTR-D-dichotoma_M_contig1106:102133..102289Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1106 102134..102289 +
1622927619.3897743-UTR-D-dichotoma_M_contig1106:102673..1027461622927619.3897743-UTR-D-dichotoma_M_contig1106:102673..102746Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1106 102674..102746 +
1690798064.8360224-UTR-D-dichotoma_M_contig1106:102673..1027461690798064.8360224-UTR-D-dichotoma_M_contig1106:102673..102746Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1106 102674..102746 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927619.3713799-CDS-D-dichotoma_M_contig1106:102289..1026731622927619.3713799-CDS-D-dichotoma_M_contig1106:102289..102673Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1106 102290..102673 +
1690798064.8223436-CDS-D-dichotoma_M_contig1106:102289..1026731690798064.8223436-CDS-D-dichotoma_M_contig1106:102289..102673Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1106 102290..102673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1106.930.1

>prot_D-dichotoma_M_contig1106.930.1 ID=prot_D-dichotoma_M_contig1106.930.1|Name=mRNA_D-dichotoma_M_contig1106.930.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=128bp
MVQVVASSSIQFWAGSSVTARALHFTRRKDHAPAHHHGSFRSGLSVISNA
LPVSMRSSPVHRRCTPSLFIGRCYSIRNPVCRHHEKPSQPWCLQRRRNCR
CRNCQCRNQSQIRMEEATQVPSTPRSP*
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mRNA from alignment at D-dichotoma_M_contig1106:102134..102746+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1106.930.1 ID=mRNA_D-dichotoma_M_contig1106.930.1|Name=mRNA_D-dichotoma_M_contig1106.930.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=613bp|location=Sequence derived from alignment at D-dichotoma_M_contig1106:102134..102746+ (Dictyota dichotoma ODC1387m male)
ATCCCCTGCTCCTTCCTCGTCTCCCGATTTCCGCCGCTTTCCCCTTCTGC
TTGTTCCCAGCAAGCAACACACAGCAACACACAGCAACACACAGCTTTGA
AGTAGAACCATTGCCTCTTGTCCGGTGATGGTTCATCATTTTGACTGGTC
AAAAAAATGGTTCAAGTGGTTGCCTCGTCCTCGATTCAGTTCTGGGCTGG
AAGTTCAGTTACAGCAAGGGCTCTACATTTTACCAGAAGGAAAGACCATG
CACCCGCCCACCATCACGGCTCATTCCGTTCTGGTCTGAGCGTTATTTCC
AATGCTCTCCCCGTCTCCATGCGTTCGTCCCCCGTGCATAGGCGGTGCAC
GCCTAGCTTGTTCATTGGCCGATGTTATTCTATACGAAACCCCGTCTGCC
GACACCATGAGAAACCATCGCAGCCTTGGTGCCTTCAGCGCCGTCGCAAC
TGCAGGTGTCGTAACTGCCAGTGTCGCAACCAGAGTCAGATACGGATGGA
GGAAGCAACTCAGGTCCCCTCCACCCCCCGGTCACCCTGACGCCTTCTAT
GTCCTACATCGAGGAGAGAGCCAAATGTCACACTCTTGCACCAAGGAAGA
CCATGAGCAATCG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1106:102134..102746+

>mRNA_D-dichotoma_M_contig1106.930.1 ID=mRNA_D-dichotoma_M_contig1106.930.1|Name=mRNA_D-dichotoma_M_contig1106.930.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=768bp|location=Sequence derived from alignment at D-dichotoma_M_contig1106:102134..102746+ (Dictyota dichotoma ODC1387m male)
ATGGTTCAAGTGGTTGCCTCGTCCTCGATTCAGTTCTGGGCTGGAAGTTC
AGTTACAGCAAGGGCTCTACATTTTACCAGAAGGAAAGACCATGCACCCG
CCCACCATCACGGCTCATTCCGTTCTGGTCTGAGCGTTATTTCCAATGCT
CTCCCCGTCTCCATGCGTTCGTCCCCCGTGCATAGGCGGTGCACGCCTAG
CTTGTTCATTGGCCGATGTTATTCTATACGAAACCCCGTCTGCCGACACC
ATGAGAAACCATCGCAGCCTTGGTGCCTTCAGCGCCGTCGCAACTGCAGG
TGTCGTAACTGCCAGTGTCGCAACCAGAGTCAGATACGGATGGAGGAAGC
AACTCAGGTCCCCTCCACCCCCCGGTCACCCTGAATGGTTCAAGTGGTTG
CCTCGTCCTCGATTCAGTTCTGGGCTGGAAGTTCAGTTACAGCAAGGGCT
CTACATTTTACCAGAAGGAAAGACCATGCACCCGCCCACCATCACGGCTC
ATTCCGTTCTGGTCTGAGCGTTATTTCCAATGCTCTCCCCGTCTCCATGC
GTTCGTCCCCCGTGCATAGGCGGTGCACGCCTAGCTTGTTCATTGGCCGA
TGTTATTCTATACGAAACCCCGTCTGCCGACACCATGAGAAACCATCGCA
GCCTTGGTGCCTTCAGCGCCGTCGCAACTGCAGGTGTCGTAACTGCCAGT
GTCGCAACCAGAGTCAGATACGGATGGAGGAAGCAACTCAGGTCCCCTCC
ACCCCCCGGTCACCCTGA
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