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Homology
BLAST of mRNA_D-dichotoma_M_contig1105.924.1 vs. uniprot
Match: D7FVF3_ECTSI (GBF1, ArfGEF protein of the BIG/GBF subfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVF3_ECTSI) HSP 1 Score: 80.1 bits (196), Expect = 4.740e-15 Identity = 48/90 (53.33%), Postives = 61/90 (67.78%), Query Frame = 3
Query: 3 QQFVTNMVMVAAHMGLLGGPNASGNTGAGDSSGVRRESQGGGS--SDPERLLYLTGQILDPVCSGLQPLLRGLAGDS----DFLAHDPPP 254
QQ +TN+VMV A+ GLLGG + G+TG GD+SG GGGS DP+RLL+ T +IL+PVC GL+PLL+GLAG + L PPP
Sbjct: 1702 QQILTNLVMVVAYAGLLGGQHVLGDTGPGDASG------GGGSRGGDPQRLLHETREILEPVCPGLRPLLKGLAGTGTTTPEALDSQPPP 1785
BLAST of mRNA_D-dichotoma_M_contig1105.924.1 vs. uniprot
Match: A0A6H5JJL6_9PHAE (SEC7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJL6_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 9.300e-13 Identity = 43/74 (58.11%), Postives = 53/74 (71.62%), Query Frame = 3
Query: 3 QQFVTNMVMVAAHMGLLGGPNASGNTGAGDSSGVRRESQGGGS--SDPERLLYLTGQILDPVCSGLQPLLRGLA 218
QQ +TNMVMV A+ GLLGG + +TG GD+SG GGGS DP RLL+ T +IL+PVC GL+PLL+GLA
Sbjct: 1734 QQILTNMVMVVAYAGLLGGQHVLDDTGPGDASG------GGGSRGGDPRRLLHETREILEPVCPGLRPLLKGLA 1801
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 74.3 |
| Seed ortholog evalue | 4.1e-11 |
| Seed eggNOG ortholog | 2880.D7FVF3 |
| Preferred name | GBF1 |
| KEGG ko | ko:K18443 |
| KEGG Pathway | ko04144,map04144 |
| GOs | GO:0000003,GO:0000137,GO:0000139,GO:0000278,GO:0000281,GO:0000578,GO:0000902,GO:0000910,GO:0000911,GO:0001736,GO:0001738,GO:0001775,GO:0002009,GO:0002064,GO:0002252,GO:0002263,GO:0002376,GO:0002790,GO:0003006,GO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005543,GO:0005547,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005783,GO:0005793,GO:0005794,GO:0005795,GO:0005798,GO:0005801,GO:0005802,GO:0005829,GO:0005886,GO:0005933,GO:0006810,GO:0006888,GO:0006890,GO:0006891,GO:0006892,GO:0006893,GO:0006895,GO:0006897,GO:0006900,GO:0006901,GO:0006903,GO:0006914,GO:0006928,GO:0006935,GO:0006955,GO:0006996,GO:0007005,GO:0007010,GO:0007029,GO:0007030,GO:0007049,GO:0007155,GO:0007163,GO:0007164,GO:0007275,GO:0007346,GO:0007389,GO:0007424,GO:0007431,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009058,GO:0009306,GO:0009605,GO:0009606,GO:0009607,GO:0009615,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009798,GO:0009826,GO:0009846,GO:0009856,GO:0009880,GO:0009888,GO:0009914,GO:0009926,GO:0009942,GO:0009966,GO:0009987,GO:0010008,GO:0010015,GO:0010053,GO:0010054,GO:0010087,GO:0010101,GO:0010102,GO:0010154,GO:0010256,GO:0010274,GO:0010311,GO:0010540,GO:0010646,GO:0010817,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016477,GO:0016482,GO:0017016,GO:0017137,GO:0019898,GO:0019899,GO:0021700,GO:0022402,GO:0022411,GO:0022414,GO:0022610,GO:0022622,GO:0023051,GO:0023052,GO:0030010,GO:0030029,GO:0030036,GO:0030154,GO:0030593,GO:0030595,GO:0030855,GO:0031090,GO:0031224,GO:0031252,GO:0031267,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032012,GO:0032501,GO:0032502,GO:0032506,GO:0032509,GO:0032879,GO:0032880,GO:0032940,GO:0032989,GO:0033036,GO:0033363,GO:0033365,GO:0034067,GO:0034613,GO:0035091,GO:0035148,GO:0035149,GO:0035150,GO:0035151,GO:0035152,GO:0035158,GO:0035159,GO:0035239,GO:0035272,GO:0035295,GO:0035296,GO:0035964,GO:0040007,GO:0040011,GO:0042147,GO:0042221,GO:0042330,GO:0042802,GO:0042803,GO:0042886,GO:0042995,GO:0043001,GO:0043087,GO:0043167,GO:0043168,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044706,GO:0045184,GO:0045229,GO:0046578,GO:0046903,GO:0046907,GO:0046983,GO:0048193,GO:0048194,GO:0048199,GO:0048200,GO:0048205,GO:0048209,GO:0048308,GO:0048313,GO:0048316,GO:0048364,GO:0048468,GO:0048469,GO:0048513,GO:0048527,GO:0048528,GO:0048583,GO:0048589,GO:0048608,GO:0048646,GO:0048729,GO:0048731,GO:0048732,GO:0048764,GO:0048765,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0050900,GO:0051020,GO:0051049,GO:0051056,GO:0051179,GO:0051234,GO:0051301,GO:0051336,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0060326,GO:0060341,GO:0060429,GO:0060541,GO:0060560,GO:0060627,GO:0060918,GO:0061024,GO:0061162,GO:0061339,GO:0061458,GO:0061640,GO:0061919,GO:0061951,GO:0065007,GO:0065008,GO:0065009,GO:0070727,GO:0070887,GO:0070971,GO:0070972,GO:0070973,GO:0071554,GO:0071555,GO:0071621,GO:0071695,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072593,GO:0072657,GO:0072659,GO:0080025,GO:0080119,GO:0090066,GO:0090150,GO:0090166,GO:0090406,GO:0090558,GO:0090627,GO:0090696,GO:0090697,GO:0090698,GO:0097111,GO:0097529,GO:0097530,GO:0097708,GO:0098586,GO:0098588,GO:0098657,GO:0098772,GO:0098791,GO:0098805,GO:0098876,GO:0099402,GO:0120025,GO:1901981,GO:1902410,GO:1902531,GO:1902936,GO:1903008,GO:1903047,GO:1903409,GO:1903420,GO:1903827,GO:1905392,GO:1905393,GO:1990266,GO:1990778,GO:2000008 |
| EggNOG free text desc. | regulation of ARF protein signal transduction |
| EggNOG OGs | COG5307@1,KOG0928@2759 |
| Ec32 ortholog description | GBF1, ArfGEF protein of the BIG/GBF subfamily |
| Ec32 ortholog | Ec-14_000900.1 |
| COG Functional cat. | L |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko04131 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 367 |
| Cds size | 345 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622927619.2436037-CDS-D-dichotoma_M_contig1105:197642..197926 | 1622927619.2436037-CDS-D-dichotoma_M_contig1105:197642..197926 | Dictyota dichotoma ODC1387m male | CDS | D-dichotoma_M_contig1105 197643..197926 - |
| 1690798064.775203-CDS-D-dichotoma_M_contig1105:197642..197926 | 1690798064.775203-CDS-D-dichotoma_M_contig1105:197642..197926 | Dictyota dichotoma ODC1387m male | CDS | D-dichotoma_M_contig1105 197643..197926 - |
| 1622927619.2591488-CDS-D-dichotoma_M_contig1105:201938..201999 | 1622927619.2591488-CDS-D-dichotoma_M_contig1105:201938..201999 | Dictyota dichotoma ODC1387m male | CDS | D-dichotoma_M_contig1105 201939..201999 - |
| 1690798064.7888288-CDS-D-dichotoma_M_contig1105:201938..201999 | 1690798064.7888288-CDS-D-dichotoma_M_contig1105:201938..201999 | Dictyota dichotoma ODC1387m male | CDS | D-dichotoma_M_contig1105 201939..201999 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622927619.276964-UTR-D-dichotoma_M_contig1105:201999..202019 | 1622927619.276964-UTR-D-dichotoma_M_contig1105:201999..202019 | Dictyota dichotoma ODC1387m male | UTR | D-dichotoma_M_contig1105 202000..202019 - |
| 1690798064.7995749-UTR-D-dichotoma_M_contig1105:201999..202019 | 1690798064.7995749-UTR-D-dichotoma_M_contig1105:201999..202019 | Dictyota dichotoma ODC1387m male | UTR | D-dichotoma_M_contig1105 202000..202019 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dichotoma_M_contig1105.924.1 >prot_D-dichotoma_M_contig1105.924.1 ID=prot_D-dichotoma_M_contig1105.924.1|Name=mRNA_D-dichotoma_M_contig1105.924.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=115bp
MVMVAAHMGLLGGPNASGNTGAGDSSGVRRESQGGGSSDPERLLYLTGQI LDPVCSGLQPLLRGLAGDSDFLAHDPPPEPRGGVERAGIRDSNAPHDARS RPAQARSDGGEIELS back to topmRNA from alignment at D-dichotoma_M_contig1105:197643..202019- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_D-dichotoma_M_contig1105.924.1 ID=mRNA_D-dichotoma_M_contig1105.924.1|Name=mRNA_D-dichotoma_M_contig1105.924.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=4377bp|location=Sequence derived from alignment at D-dichotoma_M_contig1105:197643..202019- (Dictyota dichotoma ODC1387m male) GTCAACAGTTCGTGACGAACATGGTGATGGTCGCGGCGCACATGGGGCTG
CTTGGAGGGCCGAATGCCTCGGGAAATACAGGTGTGGAGGGGGGTGGCAT
CGTCGTGGTTGGTCATCGGGGTATTACGGTGGAACGAATGACACCAAACT
TACGGGGGAAAAATCGCAGAAACTTACCCATAACTCAGCGAATACGCATG
CGATTCCACTACTTGTTCGTGCATCGTGTTTTCTAGGTTTTTGCCTATAA
TCGAAGTATAAATTGATAAAAATTGGCCCAATATTGCGTGAGTTTTGGCC
TTTCAAGTATTTCAGATTTGGTGTCGTTTGCTACAGTGGTTCAAATCGTA
ACATATTGGGCCTTGGATTGGTTTCTGTTTCTATCCAAGTGAATCAGGTC
GAAGAACGAATCGATTTCACATCGAATCGCAGGAAACAAAGATTCGGCGG
TTTACATACTGAATCCAAGTAAATTGCATCACAAATCAGGCGCGCCAACA
AGGTTTCACATCGAATCGCAGGAAACAAAGATTCGACGGTTTACATACTG
AATCCAAGTAAATTGCATCACAGATCCAAAATGTTGCGACTTGAGGTAGT
GTATCTTCCACCGTAATAGGACGCGAAGGAGTCGGAGCGCCGTATGTTCG
ATGTCAGCTCGAGCCATTTTATGTGACGTTATGTCCGCATGACTACTGTA
CAGTGCTTGAAACTATACAAATATCGTTTTTTGGCCGGCTTCATATTAAA
TGCCAGTTAAATGGACCCGAAGATTCATTTTTTAATGTTTCAAGTACTGT
ACATGGTCTAGTACGGTGGTTGAAACCGTAAAAAAATGAAGCTCCGGGAG
CCCATCACTTCCCTTGTGTATTCAAGTAACTACAGTACTAGGAATGACAA
CAATCGGGCTCTTTCATTTTTTGACTCGGATTTAGTAAGTATCCGTGAAA
AGATCCCGATTTTTATCGTTGATAGTACAGTCGAAACTCCAGATTAAGAC
ACTCCCTCATTCGGGTCCCCTCCAGATTAAGGCACTCCCAAGGGTCGTAC
AGGGGTTCAAATGGTAACCTTTCGGATCTTCGATTGAATGCTCTTTAAAT
CCAGGTAAATCCGATTAAAAGAACGATTTTCTTACGGTTTGCGAGTGCTG
CACACGCCAACCAGGTTTCACATCGAATCACAGCCAACGAAGATTCGGCG
GTTTACATACTGAATCCAAGTCAATCGCATCAAAGATCCATAATATTACT
ATTTGAAGTGCAGTACTAGCCCGAGGAATTTCAGCTCCCCCTGGGTTTCG
ATGATATAGAACTTAATGACAGCATGGGTATCAATGGTATGCCTGTGCGG
CAAGAAGATCGCACGATACAGGTATAGGATGTGTGGTAGTTTGCTGTGTG
TTCATTCCGAAATGACTTGGCCATCCTTTGGCTAGATTAAGGCACCTTCT
AGATTAAGGCACGTCCCATGGGTGTCTTAATCTGGAGCTTCGACTGTACT
GTAGACGATTTTTTTTTTACAGTTACACTGCTTAGAAAATAGTTGAACCC
CCAGATTAAGGCGCCCATTGATTAGAGCCTCTCCCAGTTTAAGGCACCCC
AAGATTAAGGCACCTCCAGATTAAGACCACCTCAAAGGTCGTACTAGCTG
GAGAAAATTCAGGCTCCCCTGGGTTTCGATAATCGAGAAATGAATCACCT
AACAAGTAACTATTCACATAACATAGCATGATCAAGGAACATGTTCACTA
CACGGAGATGGGAGGTGGAGTAGTTTACTGTGTTCCCGGGGACGAAACTA
GAGGGTTAGCCGTCCTTGGTTAGATTGAGGCCACCCCTCAGATTAAGACC
ATCCCCATGAGCGCCTCAATCTGGGGGTTCCACTGTAGTTGACGTTGTAA
AATACGGTATTTCTTGAATGGCCACACAGTAAATCCAAGTCACAGGGTTC
AAAGAGTGATGATGCTACGATGTCACCTACTGTAGTGTGCTTGGCCCTTT
CAACGCTCGGTTCGGGGTAGTCATTATTTCCCAAACCCCCGGGAGAAATG
AGGCTAGATGATTCGATGTAATCCATCTGGGAGTGTCTTACCCAGGTGTG
TTTAGTCACATCGGTCGGTCGGGGTAACAGGGACGGAATTATAATAAACC
CAACTTGGGTTCCGCTAAGCGTCTTAAGGGTTACCACACCATCAAAACCC
CAGACAACGATATATACGGTGGCCCAAATCGTGACAAAATGGATCTTTAA
AATATGACTTGGATTTAGTAATAAACCAATCAGCGATCCGTTTTTTTACG
AGTCGGATGACCGTAGGTCGAATCGTAACACAATGGTTCTTTTGTCCGTT
GACTTCGAGTTAGTATGGAGCCAATCTAAGAGCGATTTTGTTACGATTCG
AAGCTCTGTACGGGCATGATACCTGGCTTTCCACTCTGAAATTCGACGTC
AATAACCGACGGAAGCCGACCGAAGGAAGCCGACCGAAGGAAGCCGACCG
ACGAGACCGATGGAGTTCGGGTTAAGCTCAGGGGAAGAAACAAGGAGAGT
AGAGCACACGTACATCACAAAGTATCGTTTGAACTTTTAGACTACTCAGG
TCTATACAAAACCCATATTGAGATGGGAAAGGATGCATGTTTTTCAGTAC
ACTTGAGCGCAATTTTAAAAGAGGAAGGATGCAACGGCCGCTTGTTGAAC
GAAAGCCTCATGGTTCATCAATCACGTACAGTACTATGATAACAATTGAG
CTCTTCACGGCTACGTACTAAATCCAATTCAAAAAATTAAAAAGCTCGAT
TGTTATCATTGATAGTACTGTAGATATGAATGACAAATTGAGAGAAAAAG
AAGGGGAAACGTGTAGAACCGGTATACCGTGCGCATTCTATCCTAGAACC
GGTACAATTGTGGGACCGCTACGAAAGCGCTTGAGTGAACACGCGGGGAC
CACTGACTCTCCACCGAATCCGCGTTCTCGTTCACCTGATGGACTCGAGG
CAACGGGAGGTAACGGATTCTGGACGAAAAATGCCGTGCTCTGTCTCTGC
ACGCGTGTCTACAGTGCAGCAGGGGTCCCGTTATAGAGCGGTTCTGAGCA
ACGCGGCCGTCGTCCGTTACAGAGCGTTAACCATAGTCGCGCAACAACGA
GACATAAAGCCAACTAACTGCATGTAGATACAGTATGCAGTTCATCACCC
TCGACAAAGTTCCTTTCAGCAGCGTGGCATACTCCATAAGAGGGTGGAAG
TGGGTTGTTGGAGGTAGAGGTTGGGCTAGTCATTATTAATTTACCACATC
ATCCATGGATAGAAATAATCTCTTTTCTGCGGCCCGCGAACAGTAGCGCG
GCTGCCTTCGATAGCACCGGTAATGGTAAAAGCGCCGGTAACGGTAAAAG
CACCGATAATGATAACGGTAACGGTAACGGTGACGGGCACCGTGCTATAC
AAGGCGACCTACTGTGGTTCAAGCGCAACAAAATGGATCTGTGACCCATT
TACTTGATTCTACAGTAGTTGTAACTAAAAAAATAGGAAGATCCAACCGG
CTTCATATTGATTGAATGTAAAATGAACCCGAAAAAATCATTATTTGTTA
TTTCTAGTACTGGACTGTAACGTATGATATCCAAGTTAACCTCGGTAAAG
ATCCATTTTGTGACGATTTGAAGTACTGTGGTAGCAAGCAAGGGAGTGGG
ACAGTACAGAGTTGAGAGGTACAGTACTATCAATGATAACAATCGGGCTC
TTTTCACGGTACATACTAAATCCAAGTAATTTGTTTTTTAAAGAGCTCGA
GTGTTATCATTGATACTACTGTACGAGTGAGGTAGAATGTCAACGAGCTA
TCCTTGCTGGTGCGGAAGCTAGATTCGTATCCCGGGAGATGATGAGGCGA
TGGACGCCTGAACGCCTGGACGTATGAATCGATTTTCCATGGACCCGTGA
AGGCTAGCCAAGATGTTTTCCGTGTGCGACTCTGATGCCTTCAATTCCCA
TGTTTGCTTGCCCGCCCGCCTGCCCTCCCTTCCGCCGTTCGTTTGCGGGC
TCCTTTCCCCCTCATATATCCAAAAACTCGGCGCGAATCGCAGGGGCAGG
CGATTCCTCTGGAGTTCGACGAGAGAGTCAAGGCGGGGGGAGCAGTGATC
CCGAGCGGTTACTCTACCTTACGGGGCAGATCCTAGATCCTGTCTGTTCT
GGGCTACAGCCGCTCTTGCGCGGCTTGGCCGGGGATTCCGATTTCCTTGC
CCACGATCCACCGCCAGAGCCGCGGGGAGGCGTCGAAAGGGCGGGGATCA
GGGACAGCAATGCCCCTCATGATGCCCGATCACGCCCAGCTCAAGCCCGG
TCGGACGGTGGTGAGATAGAGCTTTCG back to topCoding sequence (CDS) from alignment at D-dichotoma_M_contig1105:197643..202019- >mRNA_D-dichotoma_M_contig1105.924.1 ID=mRNA_D-dichotoma_M_contig1105.924.1|Name=mRNA_D-dichotoma_M_contig1105.924.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=690bp|location=Sequence derived from alignment at D-dichotoma_M_contig1105:197643..202019- (Dictyota dichotoma ODC1387m male) ATGGTGATGGTCGCGGCGCACATGGGGCTGCTTGGAGGGCCGAATGCCTC GGGAAATACAGATGGTGATGGTCGCGGCGCACATGGGGCTGCTTGGAGGG CCGAATGCCTCGGGAAATACAGGGGCAGGCGATTCCTCTGGAGTTCGACG AGAGAGTCAAGGCGGGGGGAGCAGTGATCCCGAGCGGTTACTCTACCTTA CGGGGCAGATCCTAGATCCTGTCTGTTCTGGGCTACAGCCGCTCTTGCGC GGCTTGGCCGGGGATTCCGATTTCCTTGCCCACGATCCACCGCCAGAGCC GCGGGGAGGCGTCGAAAGGGCGGGGATCAGGGACAGCAATGCCCCTCATG ATGCCCGATCACGCCCAGCTCAAGCCCGGTCGGACGGTGGTGAGATAGAG CTTTCGGGGCAGGCGATTCCTCTGGAGTTCGACGAGAGAGTCAAGGCGGG GGGAGCAGTGATCCCGAGCGGTTACTCTACCTTACGGGGCAGATCCTAGA TCCTGTCTGTTCTGGGCTACAGCCGCTCTTGCGCGGCTTGGCCGGGGATT CCGATTTCCTTGCCCACGATCCACCGCCAGAGCCGCGGGGAGGCGTCGAA AGGGCGGGGATCAGGGACAGCAATGCCCCTCATGATGCCCGATCACGCCC AGCTCAAGCCCGGTCGGACGGTGGTGAGATAGAGCTTTCG back to top
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