mRNA_D-dichotoma_M_contig1105.924.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1105.924.1
Unique NamemRNA_D-dichotoma_M_contig1105.924.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
BLAST of mRNA_D-dichotoma_M_contig1105.924.1 vs. uniprot
Match: D7FVF3_ECTSI (GBF1, ArfGEF protein of the BIG/GBF subfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVF3_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 4.740e-15
Identity = 48/90 (53.33%), Postives = 61/90 (67.78%), Query Frame = 3
Query:    3 QQFVTNMVMVAAHMGLLGGPNASGNTGAGDSSGVRRESQGGGS--SDPERLLYLTGQILDPVCSGLQPLLRGLAGDS----DFLAHDPPP 254
            QQ +TN+VMV A+ GLLGG +  G+TG GD+SG      GGGS   DP+RLL+ T +IL+PVC GL+PLL+GLAG      + L   PPP
Sbjct: 1702 QQILTNLVMVVAYAGLLGGQHVLGDTGPGDASG------GGGSRGGDPQRLLHETREILEPVCPGLRPLLKGLAGTGTTTPEALDSQPPP 1785          
BLAST of mRNA_D-dichotoma_M_contig1105.924.1 vs. uniprot
Match: A0A6H5JJL6_9PHAE (SEC7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJL6_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 9.300e-13
Identity = 43/74 (58.11%), Postives = 53/74 (71.62%), Query Frame = 3
Query:    3 QQFVTNMVMVAAHMGLLGGPNASGNTGAGDSSGVRRESQGGGS--SDPERLLYLTGQILDPVCSGLQPLLRGLA 218
            QQ +TNMVMV A+ GLLGG +   +TG GD+SG      GGGS   DP RLL+ T +IL+PVC GL+PLL+GLA
Sbjct: 1734 QQILTNMVMVVAYAGLLGGQHVLDDTGPGDASG------GGGSRGGDPRRLLHETREILEPVCPGLRPLLKGLA 1801          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1105.924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVF3_ECTSI4.740e-1553.33GBF1, ArfGEF protein of the BIG/GBF subfamily n=1 ... [more]
A0A6H5JJL6_9PHAE9.300e-1358.11SEC7 domain-containing protein n=1 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1105contigD-dichotoma_M_contig1105:197643..202019 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue4.1e-11
Seed eggNOG ortholog2880.D7FVF3
Preferred nameGBF1
KEGG koko:K18443
KEGG Pathwayko04144,map04144
GOsGO:0000003,GO:0000137,GO:0000139,GO:0000278,GO:0000281,GO:0000578,GO:0000902,GO:0000910,GO:0000911,GO:0001736,GO:0001738,GO:0001775,GO:0002009,GO:0002064,GO:0002252,GO:0002263,GO:0002376,GO:0002790,GO:0003006,GO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005543,GO:0005547,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005783,GO:0005793,GO:0005794,GO:0005795,GO:0005798,GO:0005801,GO:0005802,GO:0005829,GO:0005886,GO:0005933,GO:0006810,GO:0006888,GO:0006890,GO:0006891,GO:0006892,GO:0006893,GO:0006895,GO:0006897,GO:0006900,GO:0006901,GO:0006903,GO:0006914,GO:0006928,GO:0006935,GO:0006955,GO:0006996,GO:0007005,GO:0007010,GO:0007029,GO:0007030,GO:0007049,GO:0007155,GO:0007163,GO:0007164,GO:0007275,GO:0007346,GO:0007389,GO:0007424,GO:0007431,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009058,GO:0009306,GO:0009605,GO:0009606,GO:0009607,GO:0009615,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009798,GO:0009826,GO:0009846,GO:0009856,GO:0009880,GO:0009888,GO:0009914,GO:0009926,GO:0009942,GO:0009966,GO:0009987,GO:0010008,GO:0010015,GO:0010053,GO:0010054,GO:0010087,GO:0010101,GO:0010102,GO:0010154,GO:0010256,GO:0010274,GO:0010311,GO:0010540,GO:0010646,GO:0010817,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016477,GO:0016482,GO:0017016,GO:0017137,GO:0019898,GO:0019899,GO:0021700,GO:0022402,GO:0022411,GO:0022414,GO:0022610,GO:0022622,GO:0023051,GO:0023052,GO:0030010,GO:0030029,GO:0030036,GO:0030154,GO:0030593,GO:0030595,GO:0030855,GO:0031090,GO:0031224,GO:0031252,GO:0031267,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032012,GO:0032501,GO:0032502,GO:0032506,GO:0032509,GO:0032879,GO:0032880,GO:0032940,GO:0032989,GO:0033036,GO:0033363,GO:0033365,GO:0034067,GO:0034613,GO:0035091,GO:0035148,GO:0035149,GO:0035150,GO:0035151,GO:0035152,GO:0035158,GO:0035159,GO:0035239,GO:0035272,GO:0035295,GO:0035296,GO:0035964,GO:0040007,GO:0040011,GO:0042147,GO:0042221,GO:0042330,GO:0042802,GO:0042803,GO:0042886,GO:0042995,GO:0043001,GO:0043087,GO:0043167,GO:0043168,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044706,GO:0045184,GO:0045229,GO:0046578,GO:0046903,GO:0046907,GO:0046983,GO:0048193,GO:0048194,GO:0048199,GO:0048200,GO:0048205,GO:0048209,GO:0048308,GO:0048313,GO:0048316,GO:0048364,GO:0048468,GO:0048469,GO:0048513,GO:0048527,GO:0048528,GO:0048583,GO:0048589,GO:0048608,GO:0048646,GO:0048729,GO:0048731,GO:0048732,GO:0048764,GO:0048765,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0050900,GO:0051020,GO:0051049,GO:0051056,GO:0051179,GO:0051234,GO:0051301,GO:0051336,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0060326,GO:0060341,GO:0060429,GO:0060541,GO:0060560,GO:0060627,GO:0060918,GO:0061024,GO:0061162,GO:0061339,GO:0061458,GO:0061640,GO:0061919,GO:0061951,GO:0065007,GO:0065008,GO:0065009,GO:0070727,GO:0070887,GO:0070971,GO:0070972,GO:0070973,GO:0071554,GO:0071555,GO:0071621,GO:0071695,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072593,GO:0072657,GO:0072659,GO:0080025,GO:0080119,GO:0090066,GO:0090150,GO:0090166,GO:0090406,GO:0090558,GO:0090627,GO:0090696,GO:0090697,GO:0090698,GO:0097111,GO:0097529,GO:0097530,GO:0097708,GO:0098586,GO:0098588,GO:0098657,GO:0098772,GO:0098791,GO:0098805,GO:0098876,GO:0099402,GO:0120025,GO:1901981,GO:1902410,GO:1902531,GO:1902936,GO:1903008,GO:1903047,GO:1903409,GO:1903420,GO:1903827,GO:1905392,GO:1905393,GO:1990266,GO:1990778,GO:2000008
EggNOG free text desc.regulation of ARF protein signal transduction
EggNOG OGsCOG5307@1,KOG0928@2759
Ec32 ortholog descriptionGBF1, ArfGEF protein of the BIG/GBF subfamily
Ec32 orthologEc-14_000900.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size367
Cds size345
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1105.924.1prot_D-dichotoma_M_contig1105.924.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1105 197643..201999 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927619.2436037-CDS-D-dichotoma_M_contig1105:197642..1979261622927619.2436037-CDS-D-dichotoma_M_contig1105:197642..197926Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1105 197643..197926 -
1690798064.775203-CDS-D-dichotoma_M_contig1105:197642..1979261690798064.775203-CDS-D-dichotoma_M_contig1105:197642..197926Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1105 197643..197926 -
1622927619.2591488-CDS-D-dichotoma_M_contig1105:201938..2019991622927619.2591488-CDS-D-dichotoma_M_contig1105:201938..201999Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1105 201939..201999 -
1690798064.7888288-CDS-D-dichotoma_M_contig1105:201938..2019991690798064.7888288-CDS-D-dichotoma_M_contig1105:201938..201999Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1105 201939..201999 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927619.276964-UTR-D-dichotoma_M_contig1105:201999..2020191622927619.276964-UTR-D-dichotoma_M_contig1105:201999..202019Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1105 202000..202019 -
1690798064.7995749-UTR-D-dichotoma_M_contig1105:201999..2020191690798064.7995749-UTR-D-dichotoma_M_contig1105:201999..202019Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1105 202000..202019 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1105.924.1

>prot_D-dichotoma_M_contig1105.924.1 ID=prot_D-dichotoma_M_contig1105.924.1|Name=mRNA_D-dichotoma_M_contig1105.924.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=115bp
MVMVAAHMGLLGGPNASGNTGAGDSSGVRRESQGGGSSDPERLLYLTGQI
LDPVCSGLQPLLRGLAGDSDFLAHDPPPEPRGGVERAGIRDSNAPHDARS
RPAQARSDGGEIELS
back to top

mRNA from alignment at D-dichotoma_M_contig1105:197643..202019-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1105.924.1 ID=mRNA_D-dichotoma_M_contig1105.924.1|Name=mRNA_D-dichotoma_M_contig1105.924.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=4377bp|location=Sequence derived from alignment at D-dichotoma_M_contig1105:197643..202019- (Dictyota dichotoma ODC1387m male)
GTCAACAGTTCGTGACGAACATGGTGATGGTCGCGGCGCACATGGGGCTG CTTGGAGGGCCGAATGCCTCGGGAAATACAGGTGTGGAGGGGGGTGGCAT CGTCGTGGTTGGTCATCGGGGTATTACGGTGGAACGAATGACACCAAACT TACGGGGGAAAAATCGCAGAAACTTACCCATAACTCAGCGAATACGCATG CGATTCCACTACTTGTTCGTGCATCGTGTTTTCTAGGTTTTTGCCTATAA TCGAAGTATAAATTGATAAAAATTGGCCCAATATTGCGTGAGTTTTGGCC TTTCAAGTATTTCAGATTTGGTGTCGTTTGCTACAGTGGTTCAAATCGTA ACATATTGGGCCTTGGATTGGTTTCTGTTTCTATCCAAGTGAATCAGGTC GAAGAACGAATCGATTTCACATCGAATCGCAGGAAACAAAGATTCGGCGG TTTACATACTGAATCCAAGTAAATTGCATCACAAATCAGGCGCGCCAACA AGGTTTCACATCGAATCGCAGGAAACAAAGATTCGACGGTTTACATACTG AATCCAAGTAAATTGCATCACAGATCCAAAATGTTGCGACTTGAGGTAGT GTATCTTCCACCGTAATAGGACGCGAAGGAGTCGGAGCGCCGTATGTTCG ATGTCAGCTCGAGCCATTTTATGTGACGTTATGTCCGCATGACTACTGTA CAGTGCTTGAAACTATACAAATATCGTTTTTTGGCCGGCTTCATATTAAA TGCCAGTTAAATGGACCCGAAGATTCATTTTTTAATGTTTCAAGTACTGT ACATGGTCTAGTACGGTGGTTGAAACCGTAAAAAAATGAAGCTCCGGGAG CCCATCACTTCCCTTGTGTATTCAAGTAACTACAGTACTAGGAATGACAA CAATCGGGCTCTTTCATTTTTTGACTCGGATTTAGTAAGTATCCGTGAAA AGATCCCGATTTTTATCGTTGATAGTACAGTCGAAACTCCAGATTAAGAC ACTCCCTCATTCGGGTCCCCTCCAGATTAAGGCACTCCCAAGGGTCGTAC AGGGGTTCAAATGGTAACCTTTCGGATCTTCGATTGAATGCTCTTTAAAT CCAGGTAAATCCGATTAAAAGAACGATTTTCTTACGGTTTGCGAGTGCTG CACACGCCAACCAGGTTTCACATCGAATCACAGCCAACGAAGATTCGGCG GTTTACATACTGAATCCAAGTCAATCGCATCAAAGATCCATAATATTACT ATTTGAAGTGCAGTACTAGCCCGAGGAATTTCAGCTCCCCCTGGGTTTCG ATGATATAGAACTTAATGACAGCATGGGTATCAATGGTATGCCTGTGCGG CAAGAAGATCGCACGATACAGGTATAGGATGTGTGGTAGTTTGCTGTGTG TTCATTCCGAAATGACTTGGCCATCCTTTGGCTAGATTAAGGCACCTTCT AGATTAAGGCACGTCCCATGGGTGTCTTAATCTGGAGCTTCGACTGTACT GTAGACGATTTTTTTTTTACAGTTACACTGCTTAGAAAATAGTTGAACCC CCAGATTAAGGCGCCCATTGATTAGAGCCTCTCCCAGTTTAAGGCACCCC AAGATTAAGGCACCTCCAGATTAAGACCACCTCAAAGGTCGTACTAGCTG GAGAAAATTCAGGCTCCCCTGGGTTTCGATAATCGAGAAATGAATCACCT AACAAGTAACTATTCACATAACATAGCATGATCAAGGAACATGTTCACTA CACGGAGATGGGAGGTGGAGTAGTTTACTGTGTTCCCGGGGACGAAACTA GAGGGTTAGCCGTCCTTGGTTAGATTGAGGCCACCCCTCAGATTAAGACC ATCCCCATGAGCGCCTCAATCTGGGGGTTCCACTGTAGTTGACGTTGTAA AATACGGTATTTCTTGAATGGCCACACAGTAAATCCAAGTCACAGGGTTC AAAGAGTGATGATGCTACGATGTCACCTACTGTAGTGTGCTTGGCCCTTT CAACGCTCGGTTCGGGGTAGTCATTATTTCCCAAACCCCCGGGAGAAATG AGGCTAGATGATTCGATGTAATCCATCTGGGAGTGTCTTACCCAGGTGTG TTTAGTCACATCGGTCGGTCGGGGTAACAGGGACGGAATTATAATAAACC CAACTTGGGTTCCGCTAAGCGTCTTAAGGGTTACCACACCATCAAAACCC CAGACAACGATATATACGGTGGCCCAAATCGTGACAAAATGGATCTTTAA AATATGACTTGGATTTAGTAATAAACCAATCAGCGATCCGTTTTTTTACG AGTCGGATGACCGTAGGTCGAATCGTAACACAATGGTTCTTTTGTCCGTT GACTTCGAGTTAGTATGGAGCCAATCTAAGAGCGATTTTGTTACGATTCG AAGCTCTGTACGGGCATGATACCTGGCTTTCCACTCTGAAATTCGACGTC AATAACCGACGGAAGCCGACCGAAGGAAGCCGACCGAAGGAAGCCGACCG ACGAGACCGATGGAGTTCGGGTTAAGCTCAGGGGAAGAAACAAGGAGAGT AGAGCACACGTACATCACAAAGTATCGTTTGAACTTTTAGACTACTCAGG TCTATACAAAACCCATATTGAGATGGGAAAGGATGCATGTTTTTCAGTAC ACTTGAGCGCAATTTTAAAAGAGGAAGGATGCAACGGCCGCTTGTTGAAC GAAAGCCTCATGGTTCATCAATCACGTACAGTACTATGATAACAATTGAG CTCTTCACGGCTACGTACTAAATCCAATTCAAAAAATTAAAAAGCTCGAT TGTTATCATTGATAGTACTGTAGATATGAATGACAAATTGAGAGAAAAAG AAGGGGAAACGTGTAGAACCGGTATACCGTGCGCATTCTATCCTAGAACC GGTACAATTGTGGGACCGCTACGAAAGCGCTTGAGTGAACACGCGGGGAC CACTGACTCTCCACCGAATCCGCGTTCTCGTTCACCTGATGGACTCGAGG CAACGGGAGGTAACGGATTCTGGACGAAAAATGCCGTGCTCTGTCTCTGC ACGCGTGTCTACAGTGCAGCAGGGGTCCCGTTATAGAGCGGTTCTGAGCA ACGCGGCCGTCGTCCGTTACAGAGCGTTAACCATAGTCGCGCAACAACGA GACATAAAGCCAACTAACTGCATGTAGATACAGTATGCAGTTCATCACCC TCGACAAAGTTCCTTTCAGCAGCGTGGCATACTCCATAAGAGGGTGGAAG TGGGTTGTTGGAGGTAGAGGTTGGGCTAGTCATTATTAATTTACCACATC ATCCATGGATAGAAATAATCTCTTTTCTGCGGCCCGCGAACAGTAGCGCG GCTGCCTTCGATAGCACCGGTAATGGTAAAAGCGCCGGTAACGGTAAAAG CACCGATAATGATAACGGTAACGGTAACGGTGACGGGCACCGTGCTATAC AAGGCGACCTACTGTGGTTCAAGCGCAACAAAATGGATCTGTGACCCATT TACTTGATTCTACAGTAGTTGTAACTAAAAAAATAGGAAGATCCAACCGG CTTCATATTGATTGAATGTAAAATGAACCCGAAAAAATCATTATTTGTTA TTTCTAGTACTGGACTGTAACGTATGATATCCAAGTTAACCTCGGTAAAG ATCCATTTTGTGACGATTTGAAGTACTGTGGTAGCAAGCAAGGGAGTGGG ACAGTACAGAGTTGAGAGGTACAGTACTATCAATGATAACAATCGGGCTC TTTTCACGGTACATACTAAATCCAAGTAATTTGTTTTTTAAAGAGCTCGA GTGTTATCATTGATACTACTGTACGAGTGAGGTAGAATGTCAACGAGCTA TCCTTGCTGGTGCGGAAGCTAGATTCGTATCCCGGGAGATGATGAGGCGA TGGACGCCTGAACGCCTGGACGTATGAATCGATTTTCCATGGACCCGTGA AGGCTAGCCAAGATGTTTTCCGTGTGCGACTCTGATGCCTTCAATTCCCA TGTTTGCTTGCCCGCCCGCCTGCCCTCCCTTCCGCCGTTCGTTTGCGGGC TCCTTTCCCCCTCATATATCCAAAAACTCGGCGCGAATCGCAGGGGCAGG CGATTCCTCTGGAGTTCGACGAGAGAGTCAAGGCGGGGGGAGCAGTGATC CCGAGCGGTTACTCTACCTTACGGGGCAGATCCTAGATCCTGTCTGTTCT GGGCTACAGCCGCTCTTGCGCGGCTTGGCCGGGGATTCCGATTTCCTTGC CCACGATCCACCGCCAGAGCCGCGGGGAGGCGTCGAAAGGGCGGGGATCA GGGACAGCAATGCCCCTCATGATGCCCGATCACGCCCAGCTCAAGCCCGG TCGGACGGTGGTGAGATAGAGCTTTCG
back to top

Coding sequence (CDS) from alignment at D-dichotoma_M_contig1105:197643..202019-

>mRNA_D-dichotoma_M_contig1105.924.1 ID=mRNA_D-dichotoma_M_contig1105.924.1|Name=mRNA_D-dichotoma_M_contig1105.924.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=690bp|location=Sequence derived from alignment at D-dichotoma_M_contig1105:197643..202019- (Dictyota dichotoma ODC1387m male)
ATGGTGATGGTCGCGGCGCACATGGGGCTGCTTGGAGGGCCGAATGCCTC
GGGAAATACAGATGGTGATGGTCGCGGCGCACATGGGGCTGCTTGGAGGG
CCGAATGCCTCGGGAAATACAGGGGCAGGCGATTCCTCTGGAGTTCGACG
AGAGAGTCAAGGCGGGGGGAGCAGTGATCCCGAGCGGTTACTCTACCTTA
CGGGGCAGATCCTAGATCCTGTCTGTTCTGGGCTACAGCCGCTCTTGCGC
GGCTTGGCCGGGGATTCCGATTTCCTTGCCCACGATCCACCGCCAGAGCC
GCGGGGAGGCGTCGAAAGGGCGGGGATCAGGGACAGCAATGCCCCTCATG
ATGCCCGATCACGCCCAGCTCAAGCCCGGTCGGACGGTGGTGAGATAGAG
CTTTCGGGGCAGGCGATTCCTCTGGAGTTCGACGAGAGAGTCAAGGCGGG
GGGAGCAGTGATCCCGAGCGGTTACTCTACCTTACGGGGCAGATCCTAGA
TCCTGTCTGTTCTGGGCTACAGCCGCTCTTGCGCGGCTTGGCCGGGGATT
CCGATTTCCTTGCCCACGATCCACCGCCAGAGCCGCGGGGAGGCGTCGAA
AGGGCGGGGATCAGGGACAGCAATGCCCCTCATGATGCCCGATCACGCCC
AGCTCAAGCCCGGTCGGACGGTGGTGAGATAGAGCTTTCG
back to top