mRNA_D-dichotoma_M_contig110.883.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig110.883.1
Unique NamemRNA_D-dichotoma_M_contig110.883.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig110.883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig110contigD-dichotoma_M_contig110:565847..569448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2448
Cds size651
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig110.883.1prot_D-dichotoma_M_contig110.883.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig110 567141..567791 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927612.691655-UTR-D-dichotoma_M_contig110:565846..5671401622927612.691655-UTR-D-dichotoma_M_contig110:565846..567140Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig110 565847..567140 -
1690798061.5301285-UTR-D-dichotoma_M_contig110:565846..5671401690798061.5301285-UTR-D-dichotoma_M_contig110:565846..567140Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig110 565847..567140 -
1622927612.717552-UTR-D-dichotoma_M_contig110:568528..5687361622927612.717552-UTR-D-dichotoma_M_contig110:568528..568736Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig110 568529..568736 -
1690798061.5482352-UTR-D-dichotoma_M_contig110:568528..5687361690798061.5482352-UTR-D-dichotoma_M_contig110:568528..568736Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig110 568529..568736 -
1622927612.7281523-UTR-D-dichotoma_M_contig110:569153..5694481622927612.7281523-UTR-D-dichotoma_M_contig110:569153..569448Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig110 569154..569448 -
1690798061.5572417-UTR-D-dichotoma_M_contig110:569153..5694481690798061.5572417-UTR-D-dichotoma_M_contig110:569153..569448Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig110 569154..569448 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927612.704063-CDS-D-dichotoma_M_contig110:567140..5677911622927612.704063-CDS-D-dichotoma_M_contig110:567140..567791Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig110 567141..567791 -
1690798061.538531-CDS-D-dichotoma_M_contig110:567140..5677911690798061.538531-CDS-D-dichotoma_M_contig110:567140..567791Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig110 567141..567791 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig110.883.1

>prot_D-dichotoma_M_contig110.883.1 ID=prot_D-dichotoma_M_contig110.883.1|Name=mRNA_D-dichotoma_M_contig110.883.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=217bp
MRLVLPLYFHLVLKKRVKNGDALTFVSEALGIGESTIRDPREDFVEHGTV
RTRDGSKRGPRRGPKAPPGLTLLLKEKVKGMNKAGRQVTVTGLQTWLASA
PSEKETRLPIQVSNRTVRNWFGNLDFHRAKGKPGYTVTEERKARIREYLI
DFTNAYKLDLDDNSPYKIVYVDESYLHVNHRSDFSWFEVNGDHRSTNKKG
RGQRIIDVHVITKAAQ*
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mRNA from alignment at D-dichotoma_M_contig110:565847..569448-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig110.883.1 ID=mRNA_D-dichotoma_M_contig110.883.1|Name=mRNA_D-dichotoma_M_contig110.883.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=3602bp|location=Sequence derived from alignment at D-dichotoma_M_contig110:565847..569448- (Dictyota dichotoma ODC1387m male)
TGGCCATTCTCCTGTTTTTCTCCTGTTTTTCTCTTGTTTTCTCCTTGCTT
TCTCCTTTCCTCTTGGGTGAGCATGGTTTGTCAACCACCACCTCTGCTGT
GAGCTTGTTGATATCAAAGTAATATATGTATATGTATATATATATTTGTT
TAAGAGCTGCTCAAGCACTAGTCCAAGTGATCAGAGCATCCACCAGGACG
AGACTTCGCGCCAAAACCAGGAAGGACTCTTCCTGTGCAGTATCTTGTTG
CTGAACATCCTACAGTACTCTGTAAGCCGAGAGCTCCAGCCTGAGGTGAG
TCTTACCACCCTCGTTTCCCTTGTCGTAGGTCCTTCACTGTATATGAGTC
TTTGCATTCGCTGTATAAGGGGAAAGCCGAGAGCATGATGCCTACTGTAG
AAGGAAACATGCCCGTAATGCCTCCGGAATTCTCAGTTGTTGCGGACCAT
CATCTTCTCTGGACTGCTTGAGCAGGTCGGTTAGAGTGAACATGTACTGG
TACAAAATCGACAATCCGTGCCAATGACATACAGTAAGTTTTCTAAAGTA
CTGTATAATAGGCTTTGGTAGGCTGATAATCTACTGTACTATACAGTAGT
TGAGCATCAAATTGTATACGGACTGTGTAAGAGCATGCTGTGGTCTGAAA
TCCAGTTGGGCACTGTATGTCCCGTTCCTTGCCCTGTCTTTGCTGTTTTA
TTCTTTCTCGAGAGTCATGCCTCGCAAGAGTAAGCGAGCTCTACAGTACC
AAAAAGCAGCTGTAAGGCTGGTGGAATCCAATGAAAGGAGACACCGTGAC
CGCTTGATGAGAGAAGAGAGGGAACAAAGAGAAGAGGGGCGTAAAGCACG
CGGAAGACTTTCTAAGCAAGTGAAGAGGGAGCTCAAGCGGGTGAAAGGAG
AAATCCTTTTGTAAGGCGAGGTAAGACGCAGCGTCGAGAGGAGTTCTTCA
CCGACTGACCCACCTGATGAATCGAAGTTATTGTACTGTGTTGCTTTGGA
AGTCACGTCCTGTCTCCTGAAAACAGTAATCTGCTTTGTCGCGTTTGGGC
CCGAGCTATTTTCTGGACGAGATTACTGTAGTGTGTTGTACAGTAGTACA
ATCATGGCATATATATAATGCGCTCGGCGAGTTCACATGAACATCCTTGC
GTACGCTATCCGAAGCCAACGACTTCGAGCTTTGCGACTGGAGGTTGAGA
GCAGGAAACTCGCACTGTATATCAGGTTGAAAAGTATCAGATTGCAGTGA
AACACAGGCTCAGTAGAGTACAGTATTTGCGTATTCGAAAAAGCGTACCC
TTAGGGGTTACGTTGGCATGGTAAAACTCACGCTAGATGCAACTGCCGGT
TCCAAAGAGAAATTACTGTACTGTAGCAGTAGTCTTGTCAGTAAGGGCCA
TTGTAGGCCCTTCCTTTCAATATGTGTAGCTGAAATGACTGCTCGATGCA
GCAATGTGAAGTATCCTACAGTATTTCAGCCCCTCTTTGAAATCGCCGTT
ATCGATGTCGCCCGTACGCCCACCACGTACATCCTGTTCTTGAAACAGTA
CATTCTGTACCGTGCTGACGTAGACACCGTAGACATAGACTCTCTTCCTC
CCGATGACTTCAGTGTAACCAAAATATATCCTCCTTGCTTGCCATAAATT
ACCGCAGATGAGGCTGGTGCTGCCCCTTTACTTTCACCTCGTGTTGAAGA
AGAGAGTAAAAAATGGCGACGCTCTGACATTCGTAAGCGAGGCTCTCGGG
ATCGGGGAATCTACCATCAGGGACCCAAGGGAGGATTTTGTAGAGCATGG
GACGGTACGTACGAGGGATGGTTCGAAACGTGGACCTAGGCGTGGACCCA
AGGCCCCACCAGGCCTCACCCTTCTTCTGAAAGAAAAGGTGAAGGGAATG
AACAAAGCGGGCCGCCAGGTAACGGTAACTGGGCTGCAGACATGGCTTGC
TAGTGCTCCGTCTGAAAAAGAAACTAGGTTACCAATCCAAGTCAGCAACA
GGACCGTTCGCAACTGGTTTGGTAACCTTGACTTTCATAGAGCGAAGGGG
AAGCCTGGTTACACGGTGACAGAAGAAAGAAAGGCCCGCATACGCGAATA
CCTGATCGACTTCACAAATGCGTATAAACTCGATCTCGATGATAACTCCC
CGTATAAGATAGTGTACGTGGACGAGTCGTATCTCCACGTGAACCACAGA
AGTGACTTTTCTTGGTTCGAGGTCAACGGAGACCATCGCTCCACGAATAA
AAAGGGGCGTGGGCAACGGATAATCGATGTCCATGTCATCACAAAGGCGG
CCCAGTGATTGCTGACGAGTGGCGCGAGGGTGGAAGAAGGGAAGGATTTC
CCAAGGCAGAAGGGTGGTTTGTAGCAGGGGATGGACGGCGTGGTTCAAAG
AAGGGCAAGGGTCGTTCTAAGGGTTCAGGAAGCGGAGGGCGGAACTTGAA
AGATCGAGAGAGCCAGGGTGCAGGGAGCCGAGGTGATAGCAGAGTTTCAC
TCAGCACAAGAGGTGACGGGAGTAGCGTCCAACGCACTGATGCAGACGGC
GACACCGGCGAAGGAGAACCAGTGGGCCCTACCCGAATCATAATTTCGGG
TGAGCCGACAGCAGAGATGCTTTTCCCTGCAGGAGAAAAGAGTTCTGAAG
ATTATCACGATAACATGGACAGTGATGTTTTTCTCACTTGGCTAAAAAAA
GCGCCTGTGGCCCACCTTTAAGCAGCTCAATGGTGAGGATAAGAAAATGA
TCCCCGTATTGGACAACGCTCCATATCACCATGGTATGGAGGAAGGGTGG
AAAAGCCCTCTTCACATGACCAAGACGGACAGTACTGCCCTGCTGTGTAA
TCTGAAGATTGGCAAAATTCGTGAGACAGTATCAGCGTGGTGCATTCGCC
AACGCTCCGAAAGGGCCCATGGTTGCTGAGGTCCGACTGGCTGCTTTCAA
GGCAGTTAAGGAGAATCGGCCTCAAGATATTCTTACCCGTGCAGAGAAAT
GGTTCAAGGACCATGATGCAGGATACATCCTGTTCACGCCACCGTACTGC
CCTGACTTCCAGCCCATCGAGCTCTTCTGGGGTATGCCAAAACCTACGTT
GCAAGCACCTACCCAGGAGAAGATGAAGGTCAAACGATGCAAGAGGCGAT
CACGTCCTTGTGTCGAGGATGGCACGGAGGAGACGCAGTCGATGGCCGAG
AGCGAAAGGCGCCCGTAAATTGTAAGACATTGGTGCGACACAGCATAACG
AAAGTTAATGAGACCATCCCAAGAGACGAGGTCTGAAGTGGCTCCGTAGA
AGATGGACTGGATAACATTCTTCCTTCTTACAAAGTTTCTCGAGACGCAG
GGTTGGAAGCTCTAGAGACAGGCGATGAAGTTGAGTTGCTCGAGGTTGAT
GTTGAGGAGGACCATTGTGACCTTGAGAAAGACGAAAACTCTCTGAAGGC
AACGTTCAATGCTCTAGAGAGATGTGATGAAGATGCAAAGGACATGGAAA
CCGCTCTGGCGACCCGGGGAGAAGAGTAGCTTCGGTACCTTGGAATTCGT
CATCTTCGTCCCTGGGTCTCCATTATGAAGTCCACTCGTAAGAATAGTAC
AG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig110:565847..569448-

>mRNA_D-dichotoma_M_contig110.883.1 ID=mRNA_D-dichotoma_M_contig110.883.1|Name=mRNA_D-dichotoma_M_contig110.883.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1302bp|location=Sequence derived from alignment at D-dichotoma_M_contig110:565847..569448- (Dictyota dichotoma ODC1387m male)
ATGAGGCTGGTGCTGCCCCTTTACTTTCACCTCGTGTTGAAGAAGAGAGT
AAAAAATGGCGACGCTCTGACATTCGTAAGCGAGGCTCTCGGGATCGGGG
AATCTACCATCAGGGACCCAAGGGAGGATTTTGTAGAGCATGGGACGGTA
CGTACGAGGGATGGTTCGAAACGTGGACCTAGGCGTGGACCCAAGGCCCC
ACCAGGCCTCACCCTTCTTCTGAAAGAAAAGGTGAAGGGAATGAACAAAG
CGGGCCGCCAGGTAACGGTAACTGGGCTGCAGACATGGCTTGCTAGTGCT
CCGTCTGAAAAAGAAACTAGGTTACCAATCCAAGTCAGCAACAGGACCGT
TCGCAACTGGTTTGGTAACCTTGACTTTCATAGAGCGAAGGGGAAGCCTG
GTTACACGGTGACAGAAGAAAGAAAGGCCCGCATACGCGAATACCTGATC
GACTTCACAAATGCGTATAAACTCGATCTCGATGATAACTCCCCGTATAA
GATAGTGTACGTGGACGAGTCGTATCTCCACGTGAACCACAGAAGTGACT
TTTCTTGGTTCGAGGTCAACGGAGACCATCGCTCCACGAATAAAAAGGGG
CGTGGGCAACGGATAATCGATGTCCATGTCATCACAAAGGCGGCCCAGTG
AATGAGGCTGGTGCTGCCCCTTTACTTTCACCTCGTGTTGAAGAAGAGAG
TAAAAAATGGCGACGCTCTGACATTCGTAAGCGAGGCTCTCGGGATCGGG
GAATCTACCATCAGGGACCCAAGGGAGGATTTTGTAGAGCATGGGACGGT
ACGTACGAGGGATGGTTCGAAACGTGGACCTAGGCGTGGACCCAAGGCCC
CACCAGGCCTCACCCTTCTTCTGAAAGAAAAGGTGAAGGGAATGAACAAA
GCGGGCCGCCAGGTAACGGTAACTGGGCTGCAGACATGGCTTGCTAGTGC
TCCGTCTGAAAAAGAAACTAGGTTACCAATCCAAGTCAGCAACAGGACCG
TTCGCAACTGGTTTGGTAACCTTGACTTTCATAGAGCGAAGGGGAAGCCT
GGTTACACGGTGACAGAAGAAAGAAAGGCCCGCATACGCGAATACCTGAT
CGACTTCACAAATGCGTATAAACTCGATCTCGATGATAACTCCCCGTATA
AGATAGTGTACGTGGACGAGTCGTATCTCCACGTGAACCACAGAAGTGAC
TTTTCTTGGTTCGAGGTCAACGGAGACCATCGCTCCACGAATAAAAAGGG
GCGTGGGCAACGGATAATCGATGTCCATGTCATCACAAAGGCGGCCCAGT
GA
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