mRNA_D-dichotoma_M_contig110.877.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig110.877.1
Unique NamemRNA_D-dichotoma_M_contig110.877.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig110.877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig110contigD-dichotoma_M_contig110:327682..328848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAdenylate cyclase-associated CAP, C-terminal
Ec32 orthologEc-15_001460.1
Exons2
Model size698
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig110.877.1prot_D-dichotoma_M_contig110.877.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig110 327742..328510 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927612.1131134-UTR-D-dichotoma_M_contig110:327681..3277411622927612.1131134-UTR-D-dichotoma_M_contig110:327681..327741Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig110 327682..327741 +
1690798061.186313-UTR-D-dichotoma_M_contig110:327681..3277411690798061.186313-UTR-D-dichotoma_M_contig110:327681..327741Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig110 327682..327741 +
1622927612.1512356-UTR-D-dichotoma_M_contig110:328510..3288481622927612.1512356-UTR-D-dichotoma_M_contig110:328510..328848Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig110 328511..328848 +
1690798061.2102494-UTR-D-dichotoma_M_contig110:328510..3288481690798061.2102494-UTR-D-dichotoma_M_contig110:328510..328848Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig110 328511..328848 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927612.1256292-CDS-D-dichotoma_M_contig110:327741..3280041622927612.1256292-CDS-D-dichotoma_M_contig110:327741..328004Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig110 327742..328004 +
1690798061.1942225-CDS-D-dichotoma_M_contig110:327741..3280041690798061.1942225-CDS-D-dichotoma_M_contig110:327741..328004Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig110 327742..328004 +
1622927612.1383529-CDS-D-dichotoma_M_contig110:328473..3285101622927612.1383529-CDS-D-dichotoma_M_contig110:328473..328510Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig110 328474..328510 +
1690798061.2020688-CDS-D-dichotoma_M_contig110:328473..3285101690798061.2020688-CDS-D-dichotoma_M_contig110:328473..328510Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig110 328474..328510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig110.877.1

>prot_D-dichotoma_M_contig110.877.1 ID=prot_D-dichotoma_M_contig110.877.1|Name=mRNA_D-dichotoma_M_contig110.877.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=100bp
MSEIFYAIAGRRARQQIIEKKENETIDVNSEGCSAVLITGCRNCTINAVR
KASKVTIERCTDISLRLGVVIAALEIIHCTGVRVSIQSAHSKNGTESSL*
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mRNA from alignment at D-dichotoma_M_contig110:327682..328848+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig110.877.1 ID=mRNA_D-dichotoma_M_contig110.877.1|Name=mRNA_D-dichotoma_M_contig110.877.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=1167bp|location=Sequence derived from alignment at D-dichotoma_M_contig110:327682..328848+ (Dictyota dichotoma ODC1387m male)
ACCACCCAGCGGTCCCAGAATACCGAGGAGAGAAGGTGCCTAAGAAATAA
CCATCCCGTGATGTCGGAGATATTTTACGCCATCGCTGGCCGCCGAGCAC
GGCAGCAGATCATCGAGAAGAAGGAGAACGAGACAATTGATGTGAACTCA
GAGGGTTGCTCAGCAGTGCTCATCACGGGGTGCCGCAACTGTACCATCAA
CGCAGTTCGGAAGGCGAGTAAGGTCACCATCGAGCGCTGCACAGATATTT
CTTTGCGGTTGGGCGTCGTCATAGCTGCTCTCGAGATCATCCACTGCACA
GGTGTACGCGTGAGCATACAGAGGTGAGAAGAAAACGGTTTACAATGTGC
TGTACCCCTGGCAGTGTTGTACTCAAGGCCACGTGTTAGCAGTGTTTCCG
GTGGAGAGGTGAGCGAAGCTTGCTTTCATAGCTTCCGAAGTCTTCGACAG
ACATGGTTTCATGGTCCGCAAAGGGTCAATGTTGAGGAAGCGCCACAGTT
ACAAAGGTGGGCCTCCTGTGCGTCATGCTCCAGATGTTCGAGTTTTGCAA
GAAATGCCGGCGATTGTGAATCTCTCTGCCGTATATCGAGTGCGCAGCTC
TTGGGTGTTGATCTCGACGCCCATTCTCCACGGTTGCACAGTCACCACCT
TCTTAGAGACTGGACAATTATCTTCTCGTGAGGGTGTTTGCGTGCAATCG
AAAAACATATCTTGGAGATTTCACTCGTCCATGTTGCACTCCTCTTCTCG
TGTTTCGTATGTTCGTTGCTTCTCGGCGACCATTTGCGAAAGTGCTCACT
CGAAAAACGGTACGGAAAGCTCCCTCTAGACGGTTACCGGATGGAACCCG
TGACGGCATGCCGCAAGAACGAGGATCGCATCATGGCTCTCTTCGACACC
AAGTGACCAACACTTCACGGCGGCGGTGGGACCTTTACCTCGTCTGTGGG
ATTCGAAATACTGTACTCTGGAGTAGGCAGAGTTGGAAGTTCACGAAAAA
AACGACGCGTAACCGCAACGACCGGGTTCTCCTCTCGAGGAAGCGAGGAA
GTCGATCAGATGTATTAGAGGGTTTCCCCTGACCTGCCCTTGTCGGTGAT
ATCAGAGGTTATTGTTTACTATCCGTGGCCCGGGGGCAGGTTAGGGGAAA
CCCCGGATTAGCCTCGG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig110:327682..328848+

>mRNA_D-dichotoma_M_contig110.877.1 ID=mRNA_D-dichotoma_M_contig110.877.1|Name=mRNA_D-dichotoma_M_contig110.877.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=600bp|location=Sequence derived from alignment at D-dichotoma_M_contig110:327682..328848+ (Dictyota dichotoma ODC1387m male)
ATGTCGGAGATATTTTACGCCATCGCTGGCCGCCGAGCACGGCAGCAGAT
CATCGAGAAGAAGGAGAACGAGACAATTGATGTGAACTCAGAGGGTTGCT
CAGCAGTGCTCATCACGGGGTGCCGCAACTGTACCATCAACGCAGTTCGG
AAGGCGAGTAAGGTCACCATCGAGCGCTGCACAGATATTTCTTTGCGGTT
GGGCGTCGTCATAGCTGCTCTCGAGATCATCCACTGCACAGGTGTACGCG
TGAGCATACAGAGATGTCGGAGATATTTTACGCCATCGCTGGCCGCCGAG
CACGGCAGCAGATCATCGAGAAGAAGGAGAACGAGACAATTGATGTGAAC
TCAGAGGGTTGCTCAGCAGTGCTCATCACGGGGTGCCGCAACTGTACCAT
CAACGCAGTTCGGAAGGCGAGTAAGGTCACCATCGAGCGCTGCACAGATA
TTTCTTTGCGGTTGGGCGTCGTCATAGCTGCTCTCGAGATCATCCACTGC
ACAGGTGTACGCGTGAGCATACAGAGTGCTCACTCGAAAAACGGTACGGA
AAGCTCCCTCTAGTGCTCACTCGAAAAACGGTACGGAAAGCTCCCTCTAG
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