mRNA_D-dichotoma_M_contig110.885.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig110.885.1
Unique NamemRNA_D-dichotoma_M_contig110.885.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig110.885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig110contigD-dichotoma_M_contig110:578328..579058 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size213
Cds size165
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig110.885.1prot_D-dichotoma_M_contig110.885.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig110 578376..579058 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927610.7092419-UTR-D-dichotoma_M_contig110:578327..5783751622927610.7092419-UTR-D-dichotoma_M_contig110:578327..578375Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig110 578328..578375 -
1690798060.4133248-UTR-D-dichotoma_M_contig110:578327..5783751690798060.4133248-UTR-D-dichotoma_M_contig110:578327..578375Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig110 578328..578375 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927610.7208982-CDS-D-dichotoma_M_contig110:578375..5784091622927610.7208982-CDS-D-dichotoma_M_contig110:578375..578409Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig110 578376..578409 -
1690798060.4212396-CDS-D-dichotoma_M_contig110:578375..5784091690798060.4212396-CDS-D-dichotoma_M_contig110:578375..578409Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig110 578376..578409 -
1622927610.7322688-CDS-D-dichotoma_M_contig110:578927..5790581622927610.7322688-CDS-D-dichotoma_M_contig110:578927..579058Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig110 578928..579058 -
1690798060.4293556-CDS-D-dichotoma_M_contig110:578927..5790581690798060.4293556-CDS-D-dichotoma_M_contig110:578927..579058Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig110 578928..579058 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig110.885.1

>prot_D-dichotoma_M_contig110.885.1 ID=prot_D-dichotoma_M_contig110.885.1|Name=mRNA_D-dichotoma_M_contig110.885.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=55bp
MELGEPFPCVHAARVLTTTTALLCAVCCSLTPFYCTLLQDNRYRSIKAAD
ACTR*
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mRNA from alignment at D-dichotoma_M_contig110:578328..579058-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig110.885.1 ID=mRNA_D-dichotoma_M_contig110.885.1|Name=mRNA_D-dichotoma_M_contig110.885.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=731bp|location=Sequence derived from alignment at D-dichotoma_M_contig110:578328..579058- (Dictyota dichotoma ODC1387m male)
ATGGAACTGGGTGAGCCCTTTCCCTGTGTGCATGCTGCACGGGTACTAAC
TACTACTACTGCACTCCTGTGTGCTGTATGTTGTAGTCTTACTCCATTCT
ACTGCACTCTACTGCAAGACAACCGCTACAGGTATTGAAGCAGCCTGTGA
AACTACTGGGTGCTGAACACCTGGAGGTTCTTACCGACTCTCACAACTGA
TCGACGGAAATTATCGATTGTGGTTCGTCCGAATGGGGGCCGGGCCAAGT
GTCTCATGAGACTTCATGGTCGCAGACGATCTTCAATCTGTTGCAGCACG
TATCCTCGGGACTAAACCGGTCAGCGGCGTAGCATTACAGTGTAGTACGT
ACACATTTCGCAAATAAATGCAGCAATTACCGGTATAGATCACAAGTTCA
CCGGGCGATAGATATCCTTCTCCATTCTGTTTCACAACGGAATGGGATTT
GAATCGTCTGGGTCCGCGAAGAGTTGATCGTGGGAATTAATCAATTCTGA
GGGCGATAGCGTGCAGCGAACAGCGAAAAGATTGGGCATGACGATCAGCA
TCAAGAGAAATATAAAACACAGCAGTATGATCTTGCAGATATACCCCTTG
CTGCGAAGATGGATCTCTGATTACCGTTTCGAATCTTCATCTTCGAAAGG
TCCATCAAGGCAGCGGATGCATGCACTCGTTGATCCAAGAACACTTCGGT
ACACTTCCAGGGACCGTCCATCAACAACGTG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig110:578328..579058-

>mRNA_D-dichotoma_M_contig110.885.1 ID=mRNA_D-dichotoma_M_contig110.885.1|Name=mRNA_D-dichotoma_M_contig110.885.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=330bp|location=Sequence derived from alignment at D-dichotoma_M_contig110:578328..579058- (Dictyota dichotoma ODC1387m male)
ATGGAACTGGGTGAGCCCTTTCCCTGTGTGCATGCTGCACGGGTACTAAC
TACTACTACTGCACTCCTGTGTGCTGTATGTTGTAGTCTTACTCCATTCT
ACTGCACTCTACTGCAAGACAACCGCTACAGATGGAACTGGGTGAGCCCT
TTCCCTGTGTGCATGCTGCACGGGTACTAACTACTACTACTGCACTCCTG
TGTGCTGTATGTTGTAGTCTTACTCCATTCTACTGCACTCTACTGCAAGA
CAACCGCTACAGGTCCATCAAGGCAGCGGATGCATGCACTCGTTGAGTCC
ATCAAGGCAGCGGATGCATGCACTCGTTGA
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