mRNA_D-dichotoma_M_contig1089.762.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1089.762.1
Unique NamemRNA_D-dichotoma_M_contig1089.762.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1089.762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1089contigD-dichotoma_M_contig1089:217575..219279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size304
Cds size303
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1089.762.1prot_D-dichotoma_M_contig1089.762.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1089 217575..219279 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927588.0647137-CDS-D-dichotoma_M_contig1089:217574..2176901622927588.0647137-CDS-D-dichotoma_M_contig1089:217574..217690Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1089 217575..217690 +
1690798050.4809752-CDS-D-dichotoma_M_contig1089:217574..2176901690798050.4809752-CDS-D-dichotoma_M_contig1089:217574..217690Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1089 217575..217690 +
1622927588.0803971-CDS-D-dichotoma_M_contig1089:218065..2182141622927588.0803971-CDS-D-dichotoma_M_contig1089:218065..218214Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1089 218066..218214 +
1690798050.498245-CDS-D-dichotoma_M_contig1089:218065..2182141690798050.498245-CDS-D-dichotoma_M_contig1089:218065..218214Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1089 218066..218214 +
1622927588.0952404-CDS-D-dichotoma_M_contig1089:219241..2192791622927588.0952404-CDS-D-dichotoma_M_contig1089:219241..219279Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1089 219242..219279 +
1690798050.5124123-CDS-D-dichotoma_M_contig1089:219241..2192791690798050.5124123-CDS-D-dichotoma_M_contig1089:219241..219279Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1089 219242..219279 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1089.762.1

>prot_D-dichotoma_M_contig1089.762.1 ID=prot_D-dichotoma_M_contig1089.762.1|Name=mRNA_D-dichotoma_M_contig1089.762.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=101bp
NDVQVVYCADDAEEDIRKECKKLKDEYEDARKDRMYQIRELQETLNNAWS
TIVHVSPILAPDEQMVLDAVSGAGCGLQKFNDKKPFKRGLERWAVADQTG
R
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mRNA from alignment at D-dichotoma_M_contig1089:217575..219279+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1089.762.1 ID=mRNA_D-dichotoma_M_contig1089.762.1|Name=mRNA_D-dichotoma_M_contig1089.762.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=1705bp|location=Sequence derived from alignment at D-dichotoma_M_contig1089:217575..219279+ (Dictyota dichotoma ODC1387m male)
AATGACGTGCAAGTTGTGTATTGTGCGGATGATGCCGAGGAAGACATCCG
GAAAGAATGCAAGAAACTCAAAGACGAGTATGAGGACGCCCGGAAGGACA
GGATGTATCAGATCCGGTGAGATACATTGCACTGAAATACCTCAATCCCC
ATCGTACAGCTAGTTCACAGTGCGTTGCCCTAGGCCTGCACCCCACCTAC
GATTCGACGACTTCTAGCGCCTGGCACGTACAGTCTTGCAGCGTAGTATT
CACTCGCAGTCCGTATGGTGGCTTGTATCAGGTGTTCCCCCCGCTCGCAC
AGAAATTCTCTGCCGTGAAAATGGAATCGGAGTCGTCCACACGAGACGGT
CACGTCTCGAGGAGGGGTTTCAGCTATTGCTTGGCTTACAAATGAATTAA
TTGCCTCGATGCTTCTGCGATTTCACCTACGAACCTTCCGTGACATACGC
ACTCTCTTTCGCTACCCTTGCGCTCGACGCTCTTAACCCAGGGAGCTGCA
AGAAACCCTGAACAACGCGTGGAGCACCATTGTCCATGTGTCACCCATAT
TGGCACCGGACGAGCAAATGGTGCTAGACGCGGTGAGCGGAGCAGGTTGT
GGCCTACAGAAATTCAACGACAAGAAGCCCTTCAAGCGAGGTAAGACAGT
AGCATGATTCGAGCGGTTGATGAAAGGCAGAGTGGAGCCCAATGCCACGG
ACTAGCCTCAAGACGCTCGTTGAGTGCTGAACCAAATTTTGCCCAACAAA
TTGTAATGTGATCGTCCCTTGTATCCGAATGGGATCTCCATCGCCGTATT
CCGTACGCAATGTTAGAACCGTAACTTCGACTCTCCGGGTCAAGTTACAG
TACATCGAGATATCCCCTGCGGTTCTCTTGGCAACCTGCCTACGGTTCGT
CTCATGAGGGACCCCAGTACGTTGTTCTTCACGTCGGCCTTTATTGCGGT
AGATCTCGCGCGAACGACGCCATGCCTTCACCCTTGGAAGGGTTCGATCT
CCTGCTCACGATGCGAGTGGCCACAAGTGAAACGAGTACAATTATAGTAC
AAGCATACACACGAGTATCGACGGGATACTACTAGGCAATCATAGTACAA
CGTTCTGGGTTTCGTGATGTAAGTACGTCACGTACGTTTTTCGATGCCGG
TGAGACCACATTGGACGCGAAAAAATCAAACTAAACATTGCTCTCGTCAT
CGTTGTCGAGTGTGTATCGGAATTCGCCGCGAGGAATAGGCGGGTCTCGT
TGTGGTTCATCCCGGCTTAAATCCGATTTTTCGATACAGTAGGAAGTTTC
CGCGTGCCGACGCACCCCTGAAGAATCGGCACTACTGAGGCGGTTATACT
CCGGGAGTTGGGAAAATCGACGCGGTTATGGAAAGAACGATTATATATAT
ATATATATATTCATCGCCCCCACGAGTTCTCCCCTCGAACTCGCTCGGTT
CTCGACAAACCTTTTCCGATGTATTTTCTCCCTGAACATAGATAGGGCCC
ACCTGCAGAAATGTGCCATGTCTTCCGTCCGATTATCTTAGAAACAGTAT
GAGAGACTTCGTGCGTCAAGATGCACGACATATTTAGATATATGCCTTCC
GTTCCGATGGTCAAGCAAGCATGTGATCGACTCTTTTCGCCCAACCATGT
ACTTGTGCCGTCTACAGGACTGGAACGGTGGGCTGTCGCGGATCAAACCG
GGCGG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1089:217575..219279+

>mRNA_D-dichotoma_M_contig1089.762.1 ID=mRNA_D-dichotoma_M_contig1089.762.1|Name=mRNA_D-dichotoma_M_contig1089.762.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=606bp|location=Sequence derived from alignment at D-dichotoma_M_contig1089:217575..219279+ (Dictyota dichotoma ODC1387m male)
AATGACGTGCAAGTTGTGTATTGTGCGGATGATGCCGAGGAAGACATCCG
GAAAGAATGCAAGAAACTCAAAGACGAGTATGAGGACGCCCGGAAGGACA
GGATGTATCAGATCCGAATGACGTGCAAGTTGTGTATTGTGCGGATGATG
CCGAGGAAGACATCCGGAAAGAATGCAAGAAACTCAAAGACGAGTATGAG
GACGCCCGGAAGGACAGGATGTATCAGATCCGGGAGCTGCAAGAAACCCT
GAACAACGCGTGGAGCACCATTGTCCATGTGTCACCCATATTGGCACCGG
ACGAGCAAATGGTGCTAGACGCGGTGAGCGGAGCAGGTTGTGGCCTACAG
AAATTCAACGACAAGAAGCCCTTCAAGCGAGGGAGCTGCAAGAAACCCTG
AACAACGCGTGGAGCACCATTGTCCATGTGTCACCCATATTGGCACCGGA
CGAGCAAATGGTGCTAGACGCGGTGAGCGGAGCAGGTTGTGGCCTACAGA
AATTCAACGACAAGAAGCCCTTCAAGCGAGGACTGGAACGGTGGGCTGTC
GCGGATCAAACCGGGCGGGACTGGAACGGTGGGCTGTCGCGGATCAAACC
GGGCGG
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