mRNA_D-dichotoma_M_contig1088.757.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1088.757.1
Unique NamemRNA_D-dichotoma_M_contig1088.757.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1088.757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1088contigD-dichotoma_M_contig1088:207155..208649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-27_002920.1
Exons3
Model size741
Cds size630
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1088.757.1prot_D-dichotoma_M_contig1088.757.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1088 207266..208649 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927586.567945-UTR-D-dichotoma_M_contig1088:207154..2072651622927586.567945-UTR-D-dichotoma_M_contig1088:207154..207265Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1088 207155..207265 +
1690798049.6538844-UTR-D-dichotoma_M_contig1088:207154..2072651690798049.6538844-UTR-D-dichotoma_M_contig1088:207154..207265Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1088 207155..207265 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927586.5834448-CDS-D-dichotoma_M_contig1088:207265..2074471622927586.5834448-CDS-D-dichotoma_M_contig1088:207265..207447Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1088 207266..207447 +
1690798049.6713822-CDS-D-dichotoma_M_contig1088:207265..2074471690798049.6713822-CDS-D-dichotoma_M_contig1088:207265..207447Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1088 207266..207447 +
1622927586.5978777-CDS-D-dichotoma_M_contig1088:207587..2078901622927586.5978777-CDS-D-dichotoma_M_contig1088:207587..207890Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1088 207588..207890 +
1690798049.6841133-CDS-D-dichotoma_M_contig1088:207587..2078901690798049.6841133-CDS-D-dichotoma_M_contig1088:207587..207890Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1088 207588..207890 +
1622927586.6154127-CDS-D-dichotoma_M_contig1088:208504..2086491622927586.6154127-CDS-D-dichotoma_M_contig1088:208504..208649Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1088 208505..208649 +
1690798049.696718-CDS-D-dichotoma_M_contig1088:208504..2086491690798049.696718-CDS-D-dichotoma_M_contig1088:208504..208649Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1088 208505..208649 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1088.757.1

>prot_D-dichotoma_M_contig1088.757.1 ID=prot_D-dichotoma_M_contig1088.757.1|Name=mRNA_D-dichotoma_M_contig1088.757.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=210bp
MGSGEKENSSTTTSWEAAIQGKSRREIASIHEARAEAEWERGLFDNAQAG
QRSKHSHRLAIALEIWTEYEEPSLVARVWCLKGICSGESKNFKKAKDFFE
QSEKLAEQAEDMSLALCALANRAICEAQIGECRAATTRARRVFEKAEAED
NVELALSAHIIRAFSDQLEGNFSSASREYDQANKFTTEPELAQLTPSLRV
AMDTNSGIW*
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mRNA from alignment at D-dichotoma_M_contig1088:207155..208649+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1088.757.1 ID=mRNA_D-dichotoma_M_contig1088.757.1|Name=mRNA_D-dichotoma_M_contig1088.757.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=1495bp|location=Sequence derived from alignment at D-dichotoma_M_contig1088:207155..208649+ (Dictyota dichotoma ODC1387m male)
AGTAGATCGGTTTACGAATAATATCCACGCTGAGTCCCGTAGTCATCGAC
GAGGGCACTGCTTCCTACACCACACATCCTGCAACTCTTAGGCTTGTCGT
GACTGAAAACTATGGGATCTGGAGAAAAGGAAAATAGCTCAACCACCACC
AGCTGGGAAGCAGCCATTCAAGGAAAGAGTCGACGAGAAATAGCTAGTAT
ACATGAGGCCCGGGCTGAGGCCGAGTGGGAAAGAGGCTTGTTCGACAACG
CACAGGCAGGTCAACGATCAAAGCACTCACATCGACTAGCTATGTGGTAG
CGGAAATCAGTTGGTGCCTAGATGATAAAGGATTCAGGGTGAATGGATAT
TAAAATAGAGTCTCTTGCTCATACTCACTCTATGACCCAAATCCATGCGC
CCCATTGCTGCACTCGCAGAAACACCTCGGGAGTGCGCTTGAGATCTGGA
CAGAGTATGAAGAACCGTCCCTAGTGGCTCGAGTATGGTGTCTGAAAGGT
ATTTGCAGTGGAGAATCAAAGAACTTCAAGAAAGCCAAGGACTTCTTCGA
GCAATCCGAGAAGCTTGCTGAACAGGCGGAGGATATGTCGTTGGCGCTGT
GTGCTTTGGCCAATCGTGCCATTTGCGAAGCTCAAATCGGGGAGTGCAGG
GCGGCGACAACGAGGGCAAGGCGTGTTTTCGAAAAGGCTGAGGCAGAAGA
CAATGTTGAGTTGGCGTTGTCTGCGCATATTATCAGGTGACAACGCGATG
TTGATCCCAGCCACGACAGAAGGTCTGAATTTTGTCCTCCTAACTGCATT
GCAAACCAGTGGCACCCGATTTAGCGGTGCTTGGTTGGTGTAGGATACGG
ATGGGACATGGTAAGCTGTCGGGGTAACACTGGGGTGTCAATGTTTATAT
GGAAACCTCCGAGCCGTCCTTGAACCCGGTATTGTGCGAGGAAGGAATGG
GGTTGTGTGAAACTCTGACCTCGCGGGGAATTATTTTTTGGAAGATACCC
ACGAAACTGTACAACACGTTTAGTATTTCTCTACGAACCGCCGGACAAAG
CATGACAGGTCACCACGCGCGTCCAACATGCTATCCTCTTTTGTCTCACT
GAGTTTACCAACCATCTGTAGATTCCTGTTACTGATCGTTTTAAAATGAT
TGTAACCGTGAGCCATCTGCTGACAACTACTGTACTGTAACTGTGAACAA
AACAGGACACGCGACCGACGTCGAGCCTGGTGCAGATATGGTTGATGGAA
GCATGCCATGTGCTTCAAGGCACGTCGCATCTCGATGTTTTCGTGGACTA
AAGAGTCCGTCAATTGTTGGTGTTCGTCTTCCACGTTGGATCCTGGTCAG
AGCCTTCAGCGATCAGCTGGAAGGGAATTTCTCGTCAGCGTCCAGGGAAT
ACGACCAAGCCAATAAGTTCACCACGGAACCCGAGCTTGCTCAGCTGACT
CCAAGTCTTAGGGTGGCAATGGACACCAACAGCGGAATATGGTGA
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1088:207155..208649+

>mRNA_D-dichotoma_M_contig1088.757.1 ID=mRNA_D-dichotoma_M_contig1088.757.1|Name=mRNA_D-dichotoma_M_contig1088.757.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1260bp|location=Sequence derived from alignment at D-dichotoma_M_contig1088:207155..208649+ (Dictyota dichotoma ODC1387m male)
ATGGGATCTGGAGAAAAGGAAAATAGCTCAACCACCACCAGCTGGGAAGC
AGCCATTCAAGGAAAGAGTCGACGAGAAATAGCTAGTATACATGAGGCCC
GGGCTGAGGCCGAGTGGGAAAGAGGCTTGTTCGACAACGCACAGGCAGGT
CAACGATCAAAGCACTCACATCGACTAGCTATATGGGATCTGGAGAAAAG
GAAAATAGCTCAACCACCACCAGCTGGGAAGCAGCCATTCAAGGAAAGAG
TCGACGAGAAATAGCTAGTATACATGAGGCCCGGGCTGAGGCCGAGTGGG
AAAGAGGCTTGTTCGACAACGCACAGGCAGGTCAACGATCAAAGCACTCA
CATCGACTAGCTATTGCGCTTGAGATCTGGACAGAGTATGAAGAACCGTC
CCTAGTGGCTCGAGTATGGTGTCTGAAAGGTATTTGCAGTGGAGAATCAA
AGAACTTCAAGAAAGCCAAGGACTTCTTCGAGCAATCCGAGAAGCTTGCT
GAACAGGCGGAGGATATGTCGTTGGCGCTGTGTGCTTTGGCCAATCGTGC
CATTTGCGAAGCTCAAATCGGGGAGTGCAGGGCGGCGACAACGAGGGCAA
GGCGTGTTTTCGAAAAGGCTGAGGCAGAAGACAATGTTGAGTTGGCGTTG
TCTGCGCATATTATCAGTGCGCTTGAGATCTGGACAGAGTATGAAGAACC
GTCCCTAGTGGCTCGAGTATGGTGTCTGAAAGGTATTTGCAGTGGAGAAT
CAAAGAACTTCAAGAAAGCCAAGGACTTCTTCGAGCAATCCGAGAAGCTT
GCTGAACAGGCGGAGGATATGTCGTTGGCGCTGTGTGCTTTGGCCAATCG
TGCCATTTGCGAAGCTCAAATCGGGGAGTGCAGGGCGGCGACAACGAGGG
CAAGGCGTGTTTTCGAAAAGGCTGAGGCAGAAGACAATGTTGAGTTGGCG
TTGTCTGCGCATATTATCAGAGCCTTCAGCGATCAGCTGGAAGGGAATTT
CTCGTCAGCGTCCAGGGAATACGACCAAGCCAATAAGTTCACCACGGAAC
CCGAGCTTGCTCAGCTGACTCCAAGTCTTAGGGTGGCAATGGACACCAAC
AGCGGAATATGGTGAAGCCTTCAGCGATCAGCTGGAAGGGAATTTCTCGT
CAGCGTCCAGGGAATACGACCAAGCCAATAAGTTCACCACGGAACCCGAG
CTTGCTCAGCTGACTCCAAGTCTTAGGGTGGCAATGGACACCAACAGCGG
AATATGGTGA
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