mRNA_D-dichotoma_M_contig1087.741.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1087.741.1
Unique NamemRNA_D-dichotoma_M_contig1087.741.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig1087.741.1 vs. uniprot
Match: D8LCB8_ECTSI (N-acetyltransferase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB8_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 2.140e-31
Identity = 67/126 (53.17%), Postives = 86/126 (68.25%), Query Frame = 1 
Query:  262 GQAP*RESLKPRPELYDELLEAARTLPKVPAPPR--------------ELCGRVVTLRTLREGTDDAAELWEACSGLPTLGKAFDPELELWNMTPYGPFKDMQEFASSPLLQPLSDGVRFKVVRRE 597
            G +  ++SLKPRPELYDELLEAA+ LP+VPA P               EL G  VTLR LR   +DA  L+EAC+G P   +A+DPEL LWN++P+GPF+ +Q+  SSPL+QPL+DG+RF V  RE
Sbjct:   48 GPSALKQSLKPRPELYDELLEAAKKLPRVPAAPPSHATGGGGIVAGEGELRGHQVTLRVLR-AAEDAERLFEACNGSPAFDQAYDPELALWNLSPHGPFETVQDLKSSPLVQPLADGLRFTVFDRE 172
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1087.741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCB8_ECTSI2.140e-3153.17N-acetyltransferase domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1087contigD-dichotoma_M_contig1087:58887..60332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue1.1e-08
Seed eggNOG ortholog2880.D8LCB8
EggNOG free text desc.Acetyltransferase (GNAT) domain
EggNOG OGs2RYT8@2759,COG1670@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons3
Model size801
Cds size198
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1087.741.1prot_D-dichotoma_M_contig1087.741.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1087 59003..59456 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927584.962041-UTR-D-dichotoma_M_contig1087:58886..590021622927584.962041-UTR-D-dichotoma_M_contig1087:58886..59002Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1087 58887..59002 +
1690798048.7949924-UTR-D-dichotoma_M_contig1087:58886..590021690798048.7949924-UTR-D-dichotoma_M_contig1087:58886..59002Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1087 58887..59002 +
1622927584.9983404-UTR-D-dichotoma_M_contig1087:59456..595971622927584.9983404-UTR-D-dichotoma_M_contig1087:59456..59597Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1087 59457..59597 +
1690798048.836987-UTR-D-dichotoma_M_contig1087:59456..595971690798048.836987-UTR-D-dichotoma_M_contig1087:59456..59597Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1087 59457..59597 +
1622927585.0123339-UTR-D-dichotoma_M_contig1087:59986..603321622927585.0123339-UTR-D-dichotoma_M_contig1087:59986..60332Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1087 59987..60332 +
1690798048.8473535-UTR-D-dichotoma_M_contig1087:59986..603321690798048.8473535-UTR-D-dichotoma_M_contig1087:59986..60332Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1087 59987..60332 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927584.9752135-CDS-D-dichotoma_M_contig1087:59002..591251622927584.9752135-CDS-D-dichotoma_M_contig1087:59002..59125Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1087 59003..59125 +
1690798048.8125968-CDS-D-dichotoma_M_contig1087:59002..591251690798048.8125968-CDS-D-dichotoma_M_contig1087:59002..59125Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1087 59003..59125 +
1622927584.986417-CDS-D-dichotoma_M_contig1087:59381..594561622927584.986417-CDS-D-dichotoma_M_contig1087:59381..59456Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1087 59382..59456 +
1690798048.8244743-CDS-D-dichotoma_M_contig1087:59381..594561690798048.8244743-CDS-D-dichotoma_M_contig1087:59381..59456Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1087 59382..59456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1087.741.1

>prot_D-dichotoma_M_contig1087.741.1 ID=prot_D-dichotoma_M_contig1087.741.1|Name=mRNA_D-dichotoma_M_contig1087.741.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=66bp
MFEVTPQMLGVIAGVLVFVATVFITLLLLVFGGSFKRMRDEASIYNEVGP
SALKRELKTSTGALR*
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mRNA from alignment at D-dichotoma_M_contig1087:58887..60332+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1087.741.1 ID=mRNA_D-dichotoma_M_contig1087.741.1|Name=mRNA_D-dichotoma_M_contig1087.741.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=1446bp|location=Sequence derived from alignment at D-dichotoma_M_contig1087:58887..60332+ (Dictyota dichotoma ODC1387m male)
TACAGTTTTCAACATTATTTATAACGTTAGACATCGGAATCCCGATGTAA
CAAGGAAGCTCGCCACGAGTCAAAGTCAATCTTGCTACGTGTGTACATCG
GGGCTCAGGGATCAGGATGTTCGAAGTAACGCCCCAAATGCTTGGGGTGA
TTGCAGGGGTACTGGTTTTCGTAGCCACCGTGTTTATTACTCTTCTTCTG
CTTGTCTTCGGAGGTTCGTTCAAACGAATGAGAGATGAGGTGAAGAGTTA
CAACCCAACTGCTGAATTTCTTATGCATCATCCGCCAAGTAGACTTTGCC
CAGGGCTCAACACACGGGGGGTCGCACTGTACAGTGCACCGCCGAAAATG
GGATTTACAATGGTCTTGACTCGTTTCCATCGTGTATGATTCGCTATCTT
GCTTCTTGTCGGCGTTGTAGGAGGTCAGAGTGCAATTGTTCGTGAACCAT
GTCATGTGTCCAGACTTCCGTCTCCACCTCTCTCGGCGTTTGCAGGCCAG
TATCTACAATGAAGTAGGGCCAAGCGCCTTGAAGAGAGAGCTTAAAACCT
CGACCGGAGCTCTACGATGAACTCTTAGAAGCAGCACGAACACTGCCCAA
GGTTCCGGCACCGCCAAGGGAGCTTTGTGGAAGGGTCGTGACCCTGCGGA
CTCTGCGCGAAGGAACCGATGATGCGGCCGAACTGTGGGAGGCCTGCAGC
GGGCTGCCGACGTAAGGGTGTAGGTGATCATGAAAGCACGACCAATCGTT
CCAACCGTGGTGTCAATCGAGATCCAATGCATGCATTTTTCGCCTTGGGA
AGATACGGTTTGCGATCTCTCGCCTGAGGTGTGAAGGATAACCGGAACGT
AGACTTGGGCGGCGAAAGGTGAGCTCTTCACCTCAGTCGCCTTTGTTTCC
TTGCGTCGCCCCTCTCCTCCGATGTGTGACCTTCACCTTCCCAACGCGTA
GCTCGTGTACGAGGGATATACCCTCGCGGTGAAGATCCACGCTCCGGAAC
TCCTGCTCAATCAGAATATCGCGAATCTTCGCGCCGCCTTTCCCTATTTC
CGTTCCTCGTTTGGTTCCGATCTCCTGATGGGATTCGAAACGCGCGACAG
ACTCGGGAAGGCCTTCGATCCCGAGCTCGAACTTTGGAACATGACTCCCT
ATGGTCCTTTCAAGGACATGCAGGAATTCGCCTCATCGCCCCTTCTGCAA
CCGCTTTCCGACGGTGTGCGTTTCAAAGTGGTGAGGAGAGAATGCCTTTC
GGCCCCAGACGGGGCCGAGATTTGGTAACCGAGCAGACCGTCAAGGCATG
TATGTGTACACGTCCCGTTCTTGGATTGCGCGATGTACGATGATACGATA
TGATTGTGATACAGTAGACACACGTCCTTTCCTCTCTGGGCAAACTGAGC
CTACTGTAAGTTCAGTACAGTGTCAATAGAGTATCAGAAGTTCACG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1087:58887..60332+

>mRNA_D-dichotoma_M_contig1087.741.1 ID=mRNA_D-dichotoma_M_contig1087.741.1|Name=mRNA_D-dichotoma_M_contig1087.741.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=396bp|location=Sequence derived from alignment at D-dichotoma_M_contig1087:58887..60332+ (Dictyota dichotoma ODC1387m male)
ATGTTCGAAGTAACGCCCCAAATGCTTGGGGTGATTGCAGGGGTACTGGT
TTTCGTAGCCACCGTGTTTATTACTCTTCTTCTGCTTGTCTTCGGAGGTT
CGTTCAAACGAATGAGAGATGAGATGTTCGAAGTAACGCCCCAAATGCTT
GGGGTGATTGCAGGGGTACTGGTTTTCGTAGCCACCGTGTTTATTACTCT
TCTTCTGCTTGTCTTCGGAGGTTCGTTCAAACGAATGAGAGATGAGGCCA
GTATCTACAATGAAGTAGGGCCAAGCGCCTTGAAGAGAGAGCTTAAAACC
TCGACCGGAGCTCTACGATGAGCCAGTATCTACAATGAAGTAGGGCCAAG
CGCCTTGAAGAGAGAGCTTAAAACCTCGACCGGAGCTCTACGATGA
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