mRNA_D-dichotoma_M_contig1087.739.1 (mRNA) Dictyota dichotoma ODC1387m male
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Overview
Homology
BLAST of mRNA_D-dichotoma_M_contig1087.739.1 vs. uniprot
Match: A0A6H5KTJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTJ7_9PHAE) HSP 1 Score: 382 bits (981), Expect = 4.330e-113 Identity = 382/838 (45.58%), Postives = 461/838 (55.01%), Query Frame = 1
Query: 4 RMNTRVMELRKERK-KMAYDTVIMSKLLQTQNKIIYEELTMKLGLNLPSLASVLNIDWELKKRAEAAHLAVKAKVDKAKRAETMRAAEGTGIRAA---PGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT-----------AAPLTASSSSIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGSLGARGTAPAGVVVGAPATATAAASASPSXXXXXXXXXXAATIKSSTASGAXXXXXXXXXXXPQHHPQTTVGYGVPQQAVPGVSAATPAATASTSVATLTGLTNAAVSASATPTTTVPSS-------------TKPKIYNDED-KNGLQKLPPDKLESARKEVESVSPEAFLREEEDRLRHA-SVLAAAEQELSRPWFATNVVDHRHAWCSLRDAGERAGMRRVLQQRPWSNPSNHLGGGKEASENDVLKLMSQGAQYYLKDLIRALKIVAWQRNGGLSGHLLDELENRLDLAADVSDSEDGEQLPEATIQERVKQELKRGLMPKLVESASQHSRVLLATEEAAHRKECMEREGRWEDEVAKQQSTAEEVRKKLIRRGTKKLPPGSFRWWEDMEIRAKSGWLSREQLAASEFARRVAIKHGIGVVASVMKXXXXXXXXXXXXXXXXXXXXXXSNG-----SPGDVAATPAAANGVKTELTPNGGGTVNGLAGSMDGGVASSRAEKRPLDPVAEDDAIETVRSIKK--CLSVPDAGNNARKRKLDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSPGIEINNADLAHLLRTVKPRGNPRSWTRILYRAQNNLPRAHA 2406
RMN R++ELR K+ Y+T IMSKL+ TQNKII +EL KLG+NL SLA L+++ ELKKR++ A+LAVK KVD+AKR+E +AA I+AA PG XXXXXXXXXXXXXXXXXXXXXXXX XXXXXXX AAP A+S + S+ GTA A +V+GA +T A+A+P XXXXXXXXXX XXXXXXXXXXX G Q P P A AA A PT P+ TKPK+YND D + GLQKLP DKL+SA+K+VE ++ + EEE RLR S L E+ + WF TNVVDHRHAWC LRDAGE+AGMRRVL++RPW NP L GGKEA+ +DVLKLMS AQYYLK+++ L +VA+QR GGLS LL +E+RL V D K EL++ L+P+L S RV+L E AHRKEC ERE RW+ E+A +TAEEVRK+LIRRGTKKLPPGSF+WWEDME RAKSGWLS+EQLA SEFARRVA+KHGIGVVA++MK XXXXXXXXXXXXXXXX P DV+ + + +GG + G A KRPLDP+A DDA+ETVR+I++ L PD G++ +EINNADLA LLR+ KPRG+PR W R+L RAQN+ HA
Sbjct: 54 RMNVRLIELRSGNSTKIEYNTTIMSKLINTQNKIITDELEQKLGMNLTSLAPHLDLEGELKKRSDTAYLAVKNKVDRAKRSEAHKAA----IKAASANPGXXXXXXXXXXXXXXXXXXXXXXXXXXPQVVAMPXXXXXXXPAAVPVKMEDVKPTVVTKPMAAPAAATSHHVVQQAHLAPQQQAVVAPQPVAPAQVKLPPT------------SVAVAGTASAPLVIGASPDSTPVAAAAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVAQHSQ-TPVYGGQAPGAAXXXXXXXXXXXXRAAPQA---PTAHAPAXXXXXXXXXXXPAYTKPKVYNDVDPRTGLQKLPTDKLDSAKKQVEHINSSDVVAEEETRLRSTPSPLVPPEKPPASTWFLTNVVDHRHAWCCLRDAGEKAGMRRVLKERPWGNPREPLEGGKEAAGSDVLKLMSFAAQYYLKNILDELAVVAYQRKGGLSAELLSGVESRL-RDPSVKDP---------------KAELRQSLVPRLP-SVRNLPRVILEKTEEAHRKECEEREERWDVELADTLTTAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLSKEQLAGSEFARRVAVKHGIGVVAALMKKKELASXXXXXXXXXXXXXXXXXXXXXXXDDPMDVSDRAITGD------SSSGGRSSKDSKGKAGNKRAPGTGLKRPLDPLASDDAVETVRNIRRRLVLGAPDHGDD-----------------------------DDDIGSGEGSTPPSEEQEASLEINNADLAELLRSTKPRGDPRKWARVLLRAQNSRKGVHA 819
BLAST of mRNA_D-dichotoma_M_contig1087.739.1 vs. uniprot
Match: D8LCB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB6_ECTSI) HSP 1 Score: 365 bits (936), Expect = 6.610e-109 Identity = 253/496 (51.01%), Postives = 302/496 (60.89%), Query Frame = 1
Query: 955 TKPKIYNDED-KNGLQKLPPDKLESARKEVESVSPEAFLREEEDRLRHA-SVLAAAEQELSRPWFATNVVDHRHAWCSLRDAGERAGMRRVLQQRPWSNPSNHLGGGKEASENDVLKLMSQGAQYYLKDLIRALKIVAWQRNGGLSGHLLDELENRLDLAADVSDSEDGEQLPEATIQERVKQELKRGLMPKLVESASQHSRVLLATEEAAHRKECMEREGRWEDEVAKQQSTAEEVRKKLIRRGTKKLPPGSFRWWEDMEIRAKSGWLSREQLAASEFARRVAIKHGIGVVASVMKXXXXXXXXXXXXXXXXXXXXXXSNG--------SPGDVAATPAAANGVKTELTPNGGGTVNGLAGSMDGGVASSRAEKRPLDPVAEDDAIETVRSIKK--CLSVPDAGNNARKRKLDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSPGIEINNADLAHLLRTVKPRGNPRSWTRILYRAQNNLPRAHA 2406
TKPK+YND D + GLQKLP DKL+SA+K+VE ++ + EEE RLR S L E+ + WF TNVVDHRHAWC LRDAGERAGMRRVL++RPW NP L GGKEA+ +DVLKLMS AQYYLK+++ L +VA+QR GGLS LL +E+RL V D K EL++ L+P+L RV L E AHRKEC ERE RW+ E+A +TAEEVRK+LIRRGTKKLPPGSF+WWEDME RAKSGWLS+EQLA SEFARRVA+KHGIGVVA++M XXXXXXXXXXXXXXXXXXXXXX P DV+ P + NG AG+ KRPLDP+A DDA+ETVR+I++ L PD G+ G+EINNADLA LLR+ KPRG+PR W R+L+RAQN+ HA
Sbjct: 178 TKPKVYNDVDPRTGLQKLPTDKLDSAKKQVEHINSSDVVAEEETRLRSTPSPLVPPEKPPASTWFLTNVVDHRHAWCCLRDAGERAGMRRVLKERPWGNPREPLEGGKEAAGSDVLKLMSLAAQYYLKNMLDELAVVAYQRKGGLSAELLSGVESRL-RDPSVKDP---------------KAELRQSLVPRLPR-VQDLPRVTLERTEEAHRKECEEREERWDVELADTLTTAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLSKEQLAGSEFARRVAVKHGIGVVAALMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADDPMDVSDRPTTGDSSSXXXXSK---DSNGKAGNK---RTPGAGLKRPLDPLASDDAVETVRNIRRRLVLGAPDDGDXXXXXXXXXRGVGATPPSE--------------------------EQEAGLEINNADLAELLRSTKPRGDPRKWARVLFRAQNSRKGVHA 624
BLAST of mRNA_D-dichotoma_M_contig1087.739.1 vs. uniprot
Match: A0A6H5K4T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4T0_9PHAE) HSP 1 Score: 147 bits (370), Expect = 2.230e-32 Identity = 100/258 (38.76%), Postives = 129/258 (50.00%), Query Frame = 1
Query: 1108 AAAEQELSRPWFATNVVDHRHAWCSLRDAGERAGMRRVLQQRPWSNPSNHLGGGKEASENDVLKLMSQGAQYYLKDLIRALKIVAWQRNGGLSGHLLDELENRLDLAADVSDSEDGEQLPEATIQERVKQELKRGLMPKL--------------------VESASQHSRVLLATEEAAHRKECMEREGRWEDEVAKQQSTAEEVRKKLIRRGTKKLPPGSFRWWEDMEIRAKSGWLSREQLAASEFARRVAIKHGIGV 1821
AAA +PWFA NVVDHR AWC LRDAG RAGMR+VLQ RPW + GGG+EA+ + VL+ YLK ++ L +VA+QR GGLS LL LE R+ ED A I L GL+P+ E AHR+ C++RE WE VA+ + A RK +R + P E + ++SGWLSREQ+AA+EFARRV +K G+G+
Sbjct: 324 AAARWREKQPWFARNVVDHRSAWCGLRDAGARAGMRKVLQPRPWGDALAPSGGGQEAANSQVLEA-------YLKRVLTELSVVAYQRRGGLSEELLQGLEERM---------EDPRSPGSALI-------LYEGLVPRFRRYQPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEAHRRSCLKREAGWEARVAEVMAAAHGGRKSRNKRRSLTNAPSRRVGVESLSAWSESGWLSREQVAANEFARRVGVKRGVGL 558
BLAST of mRNA_D-dichotoma_M_contig1087.739.1 vs. uniprot
Match: D7FYX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYX3_ECTSI) HSP 1 Score: 139 bits (351), Expect = 4.600e-30 Identity = 113/340 (33.24%), Postives = 150/340 (44.12%), Query Frame = 1
Query: 976 DEDKNGLQKLPPDKLESARKEVESVSPEAFLREEEDRLRHASVL--------------------------------------AAAEQELSRPWFATNVVDHRHAWCSLRDAGERAGMRRVLQQRPWSNPSNHLGGGKEASENDVLKLMSQGAQYYLKDLIRALKIVAWQRNGGLSGHLLDELENRLDLAADVSDSEDGEQLPEATIQERVKQELKRGLMPKLVESASQHS--------------------RVLLATEEAAHRKECMEREGRWEDEVAKQQSTAEEVRKKLIRRGTKKLPPGSFRWWEDMEIRAKSGWLSREQLAASEFARRVAIKHGIGV 1821
+ED+NGL KLP D L++ ++V+ V+ EE RLR + V AAA + +PWFA NVVDHR AWC LR+AG RAG+R+VLQ RPW +P GGG+EA+ + VL+L+S Q YLK ++ L +VA+QR GGLS LL LE R+ ED A + L GL+P+ S S R +L EE AHR+ C+ERE WE VA+ + A+ V AA+EFARRV K G+G+
Sbjct: 277 EEDRNGLLKLPWDGLDAVSEQVKLVTDARVQLIEERRLRPSYVPPLSPRDYQYSSGTGGDSTEEPGSPQGHDDSEEAEEDAEAAARRREKQPWFARNVVDHRSAWCGLRNAGARAGLRKVLQPRPWGDPLAPSGGGQEAANSQVLELISAATQAYLKRVLTELSVVAYQRRGGLSEELLQGLEERM---------EDPRSPGSALV-------LYEGLVPRFPRYESGGSXXXXXXXXXXXXXXXXXEDPREVLRREEGAHRRSCLEREAGWEARVAEVMAAADGV-------------------------------------AANEFARRVGFKRGVGL 563 The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1087.739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dichotoma_M_contig1087.739.1 >prot_D-dichotoma_M_contig1087.739.1 ID=prot_D-dichotoma_M_contig1087.739.1|Name=mRNA_D-dichotoma_M_contig1087.739.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=810bp MNTRVMELRKERKKMAYDTVIMSKLLQTQNKIIYEELTMKLGLNLPSLASback to top mRNA from alignment at D-dichotoma_M_contig1087:38646..51169+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dichotoma_M_contig1087.739.1 ID=mRNA_D-dichotoma_M_contig1087.739.1|Name=mRNA_D-dichotoma_M_contig1087.739.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=12524bp|location=Sequence derived from alignment at D-dichotoma_M_contig1087:38646..51169+ (Dictyota dichotoma ODC1387m male)back to top Coding sequence (CDS) from alignment at D-dichotoma_M_contig1087:38646..51169+ >mRNA_D-dichotoma_M_contig1087.739.1 ID=mRNA_D-dichotoma_M_contig1087.739.1|Name=mRNA_D-dichotoma_M_contig1087.739.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=4860bp|location=Sequence derived from alignment at D-dichotoma_M_contig1087:38646..51169+ (Dictyota dichotoma ODC1387m male)back to top |