mRNA_D-dichotoma_M_contig1086.736.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1086.736.1
Unique NamemRNA_D-dichotoma_M_contig1086.736.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1086.736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1086contigD-dichotoma_M_contig1086:137286..138062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size289
Cds size285
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1086.736.1prot_D-dichotoma_M_contig1086.736.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1086 137286..138058 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927583.992144-CDS-D-dichotoma_M_contig1086:137285..1374341622927583.992144-CDS-D-dichotoma_M_contig1086:137285..137434Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1086 137286..137434 -
1690798048.2448747-CDS-D-dichotoma_M_contig1086:137285..1374341690798048.2448747-CDS-D-dichotoma_M_contig1086:137285..137434Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1086 137286..137434 -
1622927584.0043228-CDS-D-dichotoma_M_contig1086:137922..1380581622927584.0043228-CDS-D-dichotoma_M_contig1086:137922..138058Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1086 137923..138058 -
1690798048.2591083-CDS-D-dichotoma_M_contig1086:137922..1380581690798048.2591083-CDS-D-dichotoma_M_contig1086:137922..138058Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1086 137923..138058 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927584.014125-UTR-D-dichotoma_M_contig1086:138058..1380621622927584.014125-UTR-D-dichotoma_M_contig1086:138058..138062Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1086 138059..138062 -
1690798048.2698603-UTR-D-dichotoma_M_contig1086:138058..1380621690798048.2698603-UTR-D-dichotoma_M_contig1086:138058..138062Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1086 138059..138062 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1086.736.1

>prot_D-dichotoma_M_contig1086.736.1 ID=prot_D-dichotoma_M_contig1086.736.1|Name=mRNA_D-dichotoma_M_contig1086.736.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=95bp
MRPGPLPDLREIPACPRKTVDEHTMTEHRKCFKALEDRIRVALRHGGEDI
TFDEAMLELEAETVDLETDIAKPCDWNLALYHLASSGVGQPSGGG
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mRNA from alignment at D-dichotoma_M_contig1086:137286..138062-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1086.736.1 ID=mRNA_D-dichotoma_M_contig1086.736.1|Name=mRNA_D-dichotoma_M_contig1086.736.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=777bp|location=Sequence derived from alignment at D-dichotoma_M_contig1086:137286..138062- (Dictyota dichotoma ODC1387m male)
GGTCATGCGACCGGGACCTCTGCCAGATTTGAGAGAGATTCCGGCCTGCC
CTCGGAAGACGGTAGACGAGCACACGATGACTGAACATCGTAAGTGCTTC
AAAGCATTGGAGGATCGTATTCGTGTTGCGCTGCGGCATGGTGAGTTCGT
TGGAAAATCGTTCTTTGAAGGATGGATGTCGAGACCTTTGTATGTTTGGA
CGGTGTGCAGAATACAAAGGAAAGGTGGGGCGGAGGAAGGGGGGGTTAAC
AGGTCGGTGTAGGAGGGTTGAATTTGAAATTACAGGGTAGAATGGTGGGT
AACGAGAAAGAAGATAAAGGGGTACAAACGTATAATATACATCCTGTTAA
GGTAGGGGTTATGGGAAGGACATTGGACAGCCTATTGGTATAATCGTAGT
GGGGAGGGGAAAGGAGTAACTATATATATATATATATATATATTGGGTGG
TGTCACCAAGTAATAGTAAATAGTAGCAAGAGGCAAACGTTGTCAACTGT
AGAGAACGCATAATCTACACCTTTAAATGAACTCTCTGGCGACCTTACAT
TCGAGCAAGAAGAGATCTAGCTATCCCGACTTGTGATATTCATCCGACTG
TGATCTTCCCCCTTCTTCTTGTCACCAGGGGGCGAGGACATCACCTTCGA
CGAGGCCATGCTCGAGTTAGAGGCAGAGACGGTGGACCTTGAGACTGACA
TAGCTAAGCCTTGCGATTGGAATCTAGCGTTGTACCACCTAGCATCGTCT
GGTGTAGGGCAGCCATCAGGAGGGGGG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1086:137286..138062-

>mRNA_D-dichotoma_M_contig1086.736.1 ID=mRNA_D-dichotoma_M_contig1086.736.1|Name=mRNA_D-dichotoma_M_contig1086.736.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=570bp|location=Sequence derived from alignment at D-dichotoma_M_contig1086:137286..138062- (Dictyota dichotoma ODC1387m male)
ATGCGACCGGGACCTCTGCCAGATTTGAGAGAGATTCCGGCCTGCCCTCG
GAAGACGGTAGACGAGCACACGATGACTGAACATCGTAAGTGCTTCAAAG
CATTGGAGGATCGTATTCGTGTTGCGCTGCGGCATGATGCGACCGGGACC
TCTGCCAGATTTGAGAGAGATTCCGGCCTGCCCTCGGAAGACGGTAGACG
AGCACACGATGACTGAACATCGTAAGTGCTTCAAAGCATTGGAGGATCGT
ATTCGTGTTGCGCTGCGGCATGGGGGCGAGGACATCACCTTCGACGAGGC
CATGCTCGAGTTAGAGGCAGAGACGGTGGACCTTGAGACTGACATAGCTA
AGCCTTGCGATTGGAATCTAGCGTTGTACCACCTAGCATCGTCTGGTGTA
GGGCAGCCATCAGGAGGGGGGGGGGCGAGGACATCACCTTCGACGAGGCC
ATGCTCGAGTTAGAGGCAGAGACGGTGGACCTTGAGACTGACATAGCTAA
GCCTTGCGATTGGAATCTAGCGTTGTACCACCTAGCATCGTCTGGTGTAG
GGCAGCCATCAGGAGGGGGG
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